Mesh Oriented datABase  (version 5.4.1)
Array-based unstructured mesh datastructure
Classes | Public Types | Static Public Member Functions | Static Public Attributes | Private Member Functions | Static Private Member Functions | Static Private Attributes
moab::CN Class Reference

Canonical numbering data and functions This class represents canonical ordering of finite-element meshes. Elements in the finite element "zoo" are represented. Canonical numbering denotes the vertex, edge, and face numbers making up each kind of element, and the vertex numbers defining those entities. Functions for evaluating adjacencies and other things based on vertex numbering are also provided. By default, this class defines a zero-based numbering system. For a complete description of this class, see the document "MOAB Canonical Numbering Conventions", Timothy J. Tautges, Sandia National Laboratories Report #SAND2004-xxxx. More...

#include <CN.hpp>

+ Collaboration diagram for moab::CN:

Classes

struct  ConnMap
struct  UpConnMap

Public Types

enum  { MAX_NODES_PER_ELEMENT = 27 }
enum  { MID_EDGE_BIT = 1 << 1, MID_FACE_BIT = 1 << 2, MID_REGION_BIT = 1 << 3 }
enum  { INTERSECT = 0, UNION }
 enum used to specify operation type More...

Static Public Member Functions

static DimensionPair getDimPair (int entity_type)
 Get the dimension pair corresponding to a dimension.
static short int GetBasis ()
 get the basis of the numbering system
static void SetBasis (const int in_basis)
 set the basis of the numbering system
static const char * EntityTypeName (const EntityType this_type)
 return the string type name for this type
static EntityType EntityTypeFromName (const char *name)
 given a name, find the corresponding entity type
static short int Dimension (const EntityType t)
 return the topological entity dimension
static short int VerticesPerEntity (const EntityType t)
 return the number of (corner) vertices contained in the specified type.
static short int NumSubEntities (const EntityType t, const int d)
 return the number of sub-entities bounding the entity.
static EntityType SubEntityType (const EntityType this_type, const int sub_dimension, const int index)
 return the type of a particular sub-entity.
static void SubEntityVertexIndices (const EntityType this_type, const int sub_dimension, const int sub_index, int sub_entity_conn[])
 return the vertex indices of the specified sub-entity.
static const short * SubEntityVertexIndices (const EntityType this_type, const int sub_dimension, const int sub_index, EntityType &sub_type, int &num_sub_ent_vertices)
 return the vertex indices of the specified sub-entity.
static void SubEntityNodeIndices (const EntityType this_topo, const int num_nodes, const int sub_dimension, const int sub_index, EntityType &sub_entity_topo, int &num_sub_entity_nodes, int sub_entity_conn[])
 return the node indices of the specified sub-entity.
static void SubEntityConn (const void *parent_conn, const EntityType parent_type, const int sub_dimension, const int sub_index, void *sub_entity_conn, int &num_sub_vertices)
 return the vertices of the specified sub entity
static short int AdjacentSubEntities (const EntityType this_type, const int *source_indices, const int num_source_indices, const int source_dim, const int target_dim, std::vector< int > &index_list, const int operation_type=CN::INTERSECT)
 For a specified set of sides of given dimension, return the intersection or union of all sides of specified target dimension adjacent to those sides.
static short int SideNumber (const EntityType parent_type, const int *parent_conn, const int *child_conn, const int child_num_verts, const int child_dim, int &side_number, int &sense, int &offset)
 return the side index represented in the input sub-entity connectivity in the input parent entity connectivity array.
static short int SideNumber (const EntityType parent_type, const unsigned int *parent_conn, const unsigned int *child_conn, const int child_num_verts, const int child_dim, int &side_number, int &sense, int &offset)
static short int SideNumber (const EntityType parent_type, const long *parent_conn, const long *child_conn, const int child_num_verts, const int child_dim, int &side_number, int &sense, int &offset)
static short int SideNumber (const EntityType parent_type, const unsigned long *parent_conn, const unsigned long *child_conn, const int child_num_verts, const int child_dim, int &side_number, int &sense, int &offset)
static short int SideNumber (const EntityType parent_type, const unsigned long long *parent_conn, const unsigned long long *child_conn, const int child_num_verts, const int child_dim, int &side_number, int &sense, int &offset)
static short int SideNumber (const EntityType parent_type, void *const *parent_conn, void *const *child_conn, const int child_num_verts, const int child_dim, int &side_number, int &sense, int &offset)
static short int SideNumber (const EntityType parent_type, const int *child_conn_indices, const int child_num_verts, const int child_dim, int &side_number, int &sense, int &offset)
 return the side index represented in the input sub-entity connectivity
static short int OppositeSide (const EntityType parent_type, const int child_index, const int child_dim, int &opposite_index, int &opposite_dim)
 return the dimension and index of the opposite side, given parent entity type and child dimension and index. This function is only defined for certain types of parent/child types: (Parent, Child dim->Opposite dim): (Tri, 1->0), (Tri, 0->1), (Quad, 1->1), (Quad, 0->0), (Tet, 2->0), (Tet, 1->1), (Tet, 0->2), (Hex, 2->2), (Hex, 1->1)(diagonally across element), (Hex, 0->0) (diagonally across element) All other parent types and child dimensions return an error.
static bool ConnectivityMatch (const int *conn1, const int *conn2, const int num_vertices, int &direct, int &offset)
 given two connectivity arrays, determine whether or not they represent the same entity.
static bool ConnectivityMatch (const unsigned int *conn1, const unsigned int *conn2, const int num_vertices, int &direct, int &offset)
static bool ConnectivityMatch (const long *conn1, const long *conn2, const int num_vertices, int &direct, int &offset)
static bool ConnectivityMatch (const unsigned long *conn1, const unsigned long *conn2, const int num_vertices, int &direct, int &offset)
static bool ConnectivityMatch (const unsigned long long *conn1, const unsigned long long *conn2, const int num_vertices, int &direct, int &offset)
static bool ConnectivityMatch (void *const *conn1, void *const *conn2, const int num_vertices, int &direct, int &offset)
static void setPermutation (const EntityType t, const int dim, short int *pvec, const int num_entries, const bool is_reverse=false)
 Set permutation or reverse permutation vector Forward permutation is from CN's numbering into application's ordering; that is, if i is CN's index, pvec[i] is application's index. This function stores the permutation vector for this type and facet dimension, which then is used in calls to permuteThis or revPermuteThis.
static void resetPermutation (const EntityType t, const int dim)
 Reset permutation or reverse permutation vector.
static int permuteThis (const EntityType t, const int dim, int *pvec, const int indices_per_ent, const int num_entries)
 Permute a handle array according to permutation vector set with setPermute; permutation is done in-place.
static int permuteThis (const EntityType t, const int dim, unsigned int *pvec, const int indices_per_ent, const int num_entries)
static int permuteThis (const EntityType t, const int dim, long *pvec, const int indices_per_ent, const int num_entries)
static int permuteThis (const EntityType t, const int dim, void **pvec, const int indices_per_ent, const int num_entries)
static int revPermuteThis (const EntityType t, const int dim, int *pvec, const int indices_per_ent, const int num_entries)
 Reverse permute a handle array according to reverse permutation vector set with setPermute; reverse permutation is done in-place.
static int revPermuteThis (const EntityType t, const int dim, unsigned int *pvec, const int indices_per_ent, const int num_entries)
static int revPermuteThis (const EntityType t, const int dim, long *pvec, const int indices_per_ent, const int num_entries)
static int revPermuteThis (const EntityType t, const int dim, void **pvec, const int indices_per_ent, const int num_entries)
static bool HasMidEdgeNodes (const EntityType this_type, const int num_verts)
 true if entities of a given type and number of nodes indicates mid edge nodes are present.
static bool HasMidFaceNodes (const EntityType this_type, const int num_verts)
 true if entities of a given type and number of nodes indicates mid face nodes are present.
static bool HasMidRegionNodes (const EntityType this_type, const int num_verts)
 true if entities of a given type and number of nodes indicates mid region nodes are present.
static void HasMidNodes (const EntityType this_type, const int num_verts, int mid_nodes[4])
 true if entities of a given type and number of nodes indicates mid edge/face/region nodes are present.
static int HasMidNodes (const EntityType this_type, const int num_verts)
 Same as above, except returns a single integer with the bits, from least significant to most significant set to one if the corresponding mid nodes on sub entities of the least dimension (0) to the highest dimension (3) are present in the elment type.
static void HONodeParent (EntityType elem_type, int num_nodes, int ho_node_index, int &parent_dim, int &parent_index)
 given data about an element and a vertex in that element, return the dimension and index of the sub-entity that the vertex resolves. If it does not resolve a sub-entity, either because it's a corner node or it's not in the element, -1 is returned in both return values.
static short int HONodeIndex (const EntityType this_type, const int num_verts, const int subfacet_dim, const int subfacet_index)
 for an entity of this type with num_verts vertices, and a specified subfacet (dimension and index), return the index of the higher order node for that entity in this entity's connectivity array

Static Public Attributes

static MOAB_EXPORT const ConnMap mConnectivityMap [MBMAXTYPE][3]
static const UpConnMap mUpConnMap [MBMAXTYPE][4][4]
static MOAB_EXPORT const
unsigned char 		midNodesPerType [MBMAXTYPE][MAX_NODES_PER_ELEMENT+1]
static short int permuteVec [MBMAXTYPE][3][MAX_SUB_ENTITIES+1]
 Permutation and reverse permutation vectors.
static short int revPermuteVec [MBMAXTYPE][3][MAX_SUB_ENTITIES+1]
static MOAB_EXPORT const
DimensionPair 		TypeDimensionMap []
 this const vector defines the starting and ending EntityType for each dimension, e.g. TypeDimensionMap[2] returns a pair of EntityTypes bounding dimension 2.

Private Member Functions

 CN ()
 declare private constructor, since we don't want to create any of these

Static Private Member Functions

static void SwitchBasis (const int old_basis, const int new_basis)
 switch the basis

Static Private Attributes

static MOAB_EXPORT const char * entityTypeNames []
 entity names
static MOAB_EXPORT short int numberBasis = 0
 the basis of the numbering system (normally 0 or 1, 0 by default)
static MOAB_EXPORT short increasingInts []

Detailed Description

Canonical numbering data and functions This class represents canonical ordering of finite-element meshes. Elements in the finite element "zoo" are represented. Canonical numbering denotes the vertex, edge, and face numbers making up each kind of element, and the vertex numbers defining those entities. Functions for evaluating adjacencies and other things based on vertex numbering are also provided. By default, this class defines a zero-based numbering system. For a complete description of this class, see the document "MOAB Canonical Numbering Conventions", Timothy J. Tautges, Sandia National Laboratories Report #SAND2004-xxxx.

MOAB, a Mesh-Oriented datABase, is a software component for creating, storing and accessing finite element mesh data.

Copyright 2004 Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software.

This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.

Author:
Tim Tautges
Date:
April 2004

Definition at line 56 of file CN.hpp.

Member Enumeration Documentation

anonymous enum
Enumerator:
MAX_NODES_PER_ELEMENT 

Definition at line 74 of file CN.hpp.

    {
        MAX_NODES_PER_ELEMENT = 27
    };
anonymous enum
Enumerator:
MID_EDGE_BIT 
MID_FACE_BIT 
MID_REGION_BIT 

Definition at line 78 of file CN.hpp.

    {
        MID_EDGE_BIT   = 1 << 1,
        MID_FACE_BIT   = 1 << 2,
        MID_REGION_BIT = 1 << 3
    };
anonymous enum

enum used to specify operation type

Enumerator:
INTERSECT 
UNION 

Definition at line 86 of file CN.hpp.

    {
        INTERSECT = 0,
        UNION
    };

Constructor & Destructor Documentation

moab::CN::CN ( ) [private]

declare private constructor, since we don't want to create any of these

Member Function Documentation

short int moab::CN::AdjacentSubEntities ( const EntityType  this_type,
const int *  source_indices,
const int  num_source_indices,
const int  source_dim,
const int  target_dim,
std::vector< int > &  index_list,
const int  operation_type = CN::INTERSECT 
) [static]

For a specified set of sides of given dimension, return the intersection or union of all sides of specified target dimension adjacent to those sides.

given an entity and a target dimension & side number, get that entity

Parameters:
this_typeType of entity for which sub-entity connectivity is being queried
source_indicesIndices of sides being queried
num_source_indicesNumber of entries in source_indices
source_dimDimension of source entity
target_dimDimension of target entity
index_listIndices of target entities (returned)
operation_typeSpecify either CN::INTERSECT or CN::UNION to get intersection or union of target entity lists over source entities

Definition at line 138 of file CN.cpp.

References moab::CN::ConnMap::conn, Dimension(), mConnectivityMap, MUC, moab::CN::ConnMap::num_corners_per_sub_element, and UNION.

Referenced by moab::AEntityFactory::get_down_adjacency_elements(), and moab::Core::side_element().

{
    // first get all the vertex indices
    std::vector< int > tmp_indices;
    const int* it1 = source_indices;

    assert( source_dim <= 3 && target_dim >= 0 && target_dim <= 3 &&
            // make sure we're not stepping off the end of the array;
            ( ( source_dim > 0 && *it1 < mConnectivityMap[this_type][source_dim - 1].num_sub_elements ) ||
              ( source_dim == 0 &&
                *it1 < mConnectivityMap[this_type][Dimension( this_type ) - 1].num_corners_per_sub_element[0] ) ) &&
            *it1 >= 0 );

#define MUC CN::mUpConnMap[this_type][source_dim][target_dim]

    // if we're looking for the vertices of a single side, return them in
    // the canonical ordering; otherwise, return them in sorted order
    if( num_source_indices == 1 && 0 == target_dim && source_dim != target_dim )
    {

        // element of mConnectivityMap should be for this type and for one
        // less than source_dim, which should give the connectivity of that sub element
        const ConnMap& cm = mConnectivityMap[this_type][source_dim - 1];
        std::copy( cm.conn[source_indices[0]],
                   cm.conn[source_indices[0]] + cm.num_corners_per_sub_element[source_indices[0]],
                   std::back_inserter( index_list ) );
        return 0;
    }

    // now go through source indices, folding adjacencies into target list
    for( it1 = source_indices; it1 != source_indices + num_source_indices; it1++ )
    {
        // *it1 is the side index
        // at start of iteration, index_list has the target list

        // if a union, or first iteration and index list was empty, copy the list
        if( operation_type == CN::UNION || ( it1 == source_indices && index_list.empty() ) )
        {
            std::copy( MUC.targets_per_source_element[*it1],
                       MUC.targets_per_source_element[*it1] + MUC.num_targets_per_source_element[*it1],
                       std::back_inserter( index_list ) );
        }
        else
        {
            // else we're intersecting, and have a non-empty list; intersect with this target list
            tmp_indices.clear();
            for( int i = MUC.num_targets_per_source_element[*it1] - 1; i >= 0; i-- )
                if( std::find( index_list.begin(), index_list.end(), MUC.targets_per_source_element[*it1][i] ) !=
                    index_list.end() )
                    tmp_indices.push_back( MUC.targets_per_source_element[*it1][i] );
            //      std::set_intersection(MUC.targets_per_source_element[*it1],
            //                            MUC.targets_per_source_element[*it1]+
            //                            MUC.num_targets_per_source_element[*it1],
            //                            index_list.begin(), index_list.end(),
            //                            std::back_inserter(tmp_indices));
            index_list.swap( tmp_indices );

            // if we're at this point and the list is empty, the intersection will be NULL;
            // return if so
            if( index_list.empty() ) return 0;
        }
    }

    if( operation_type == CN::UNION && num_source_indices != 1 )
    {
        // need to sort then unique the list
        std::sort( index_list.begin(), index_list.end() );
        index_list.erase( std::unique( index_list.begin(), index_list.end() ), index_list.end() );
    }

    return 0;
}
bool moab::CN::ConnectivityMatch ( const int *  conn1,
const int *  conn2,
const int  num_vertices,
int &  direct,
int &  offset 
) [static]

given two connectivity arrays, determine whether or not they represent the same entity.

Parameters:
conn1Connectivity array of first entity
conn2Connectivity array of second entity
num_verticesNumber of entries in conn1 and conn2
directIf positive, entities have the same sense (returned)
offsetOffset of conn2's first vertex in conn1
Returns:
bool Returns true if conn1 and conn2 match

Definition at line 540 of file CN.cpp.

Referenced by moab::HalfFacetRep::get_down_adjacencies_face_3d(), moab::Core::merge_entities(), moab::Core::side_number(), and SideNumber().

{
    return connectivity_match< int >( conn1_i, conn2_i, num_vertices, direct, offset );
}
bool moab::CN::ConnectivityMatch ( const unsigned int *  conn1,
const unsigned int *  conn2,
const int  num_vertices,
int &  direct,
int &  offset 
) [static]

Definition at line 545 of file CN.cpp.

{
    return connectivity_match< unsigned int >( conn1_i, conn2_i, num_vertices, direct, offset );
}
bool moab::CN::ConnectivityMatch ( const long *  conn1,
const long *  conn2,
const int  num_vertices,
int &  direct,
int &  offset 
) [static]

Definition at line 554 of file CN.cpp.

{
    return connectivity_match< long >( conn1_i, conn2_i, num_vertices, direct, offset );
}
bool moab::CN::ConnectivityMatch ( const unsigned long *  conn1,
const unsigned long *  conn2,
const int  num_vertices,
int &  direct,
int &  offset 
) [static]

Definition at line 559 of file CN.cpp.

{
    return connectivity_match< unsigned long >( conn1_i, conn2_i, num_vertices, direct, offset );
}
bool moab::CN::ConnectivityMatch ( const unsigned long long *  conn1,
const unsigned long long *  conn2,
const int  num_vertices,
int &  direct,
int &  offset 
) [static]

Definition at line 568 of file CN.cpp.

{
    return connectivity_match< unsigned long long >( conn1_i, conn2_i, num_vertices, direct, offset );
}
bool moab::CN::ConnectivityMatch ( void *const *  conn1,
void *const *  conn2,
const int  num_vertices,
int &  direct,
int &  offset 
) [static]

Definition at line 577 of file CN.cpp.

{
    return connectivity_match< void* >( conn1_i, conn2_i, num_vertices, direct, offset );
}
short int moab::CN::Dimension ( const EntityType  t) [static]

return the topological entity dimension

Definition at line 1066 of file CN.cpp.

References mConnectivityMap, t, and moab::CN::ConnMap::topo_dimension.

Referenced by AdjacentSubEntities(), moab::Range::all_of_dimension(), moab::SweptElementData::calc_num_entities(), moab::ScdElementData::calc_num_entities(), moab::Skinner::classify_2d_boundary(), moab::DualTool::construct_dual_cells(), moab::DualTool::construct_dual_edges(), moab::DualTool::construct_dual_faces(), moab::DualTool::construct_dual_vertices(), moab::HigherOrderFactory::convert_sequence(), moab::SpectralMeshTool::convert_to_coarse(), moab::HigherOrderFactory::copy_mid_face_nodes(), moab::SequenceManager::create_scd_sequence(), moab::ReadGmsh::create_sets(), moab::Skinner::create_side(), moab::ReadNCDF::create_sideset_element(), moab::SequenceManager::create_sweep_sequence(), moab::MeshSet::DIM_FROM_HANDLE(), moab::Core::dimension_from_handle(), moab::Skinner::face_reversed(), moab::ParallelComm::find_existing_entity(), moab::Skinner::find_skin_noadj(), moab::Skinner::find_skin_vertices(), moab::WriteTemplate::gather_mesh_information(), moab::WriteSLAC::gather_mesh_information(), moab::WriteNCDF::gather_mesh_information(), moab::AEntityFactory::get_adjacencies(), moab::get_adjacencies_intersection(), moab::get_adjacencies_union(), moab::MeshTopoUtil::get_bridge_adjacencies(), moab::AEntityFactory::get_element(), moab::AEntityFactory::get_elements(), moab::WriteTemplate::get_neuset_elems(), moab::WriteSLAC::get_neuset_elems(), moab::WriteCCMIO::get_neuset_elems(), moab::VectorSetIterator::get_next_arr(), moab::RangeSetIterator::get_next_by_dimension(), moab::ReadUtil::get_ordered_vertices(), moab::SweptElementData::get_params_connectivity(), moab::ScdElementData::get_params_connectivity(), moab::WriteNCDF::get_sideset_elems(), moab::AEntityFactory::get_up_adjacency_elements(), moab::WriteTemplate::get_valid_sides(), moab::WriteSLAC::get_valid_sides(), moab::WriteNCDF::get_valid_sides(), moab::Core::high_order_node(), HONodeParent(), moab::WriteHDF5::initialize_mesh(), moab::Core::list_entity(), moab::ReadHDF5::load_file_partial(), moab::AEntityFactory::merge_adjust_adjacencies(), moab::Core::merge_entities(), moab::Range::num_of_dimension(), orient_faces_outward(), moab::Tqdcfr::read_block(), moab::Tqdcfr::read_elements(), moab::Tqdcfr::GeomHeader::read_info_header(), moab::AEntityFactory::remove_all_adjacencies(), moab::HigherOrderFactory::remove_mid_face_nodes(), moab::Core::side_number(), SideNumber(), moab::MeshTopoUtil::split_entities_manifold(), moab::ExoIIUtil::static_get_element_type(), SubEntityType(), moab::ReadNCDF::update(), and moab::HigherOrderFactory::zero_mid_face_nodes().

{
    return mConnectivityMap[t][0].topo_dimension;
}
EntityType moab::CN::EntityTypeFromName ( const char *  name) [static]

given a name, find the corresponding entity type

return a type for the given name

Definition at line 56 of file CN.cpp.

References entityTypeNames, MBMAXTYPE, and MBVERTEX.

Referenced by moab::ReadHDF5::load_file_impl(), moab::ReadHDF5::load_file_partial(), moab::ReadHDF5::read_elems(), moab::ReadHDF5::read_node_adj_elems(), and moab::ReadHDF5::read_poly().

{
    for( EntityType i = MBVERTEX; i < MBMAXTYPE; i++ )
    {
        if( 0 == strcmp( name, entityTypeNames[i] ) ) return i;
    }

    return MBMAXTYPE;
}
const char * moab::CN::EntityTypeName ( const EntityType  this_type) [static]

return the string type name for this type

Examples:
GetEntities.cpp, and StructuredMeshSimple.cpp.

Definition at line 666 of file CN.cpp.

References entityTypeNames.

Referenced by moab::WriteHDF5::assign_ids(), moab::Core::check_adjacencies(), moab::ReadCCMIO::create_cell_from_faces(), moab::ParallelComm::create_interface_sets(), moab::ent_not_found(), moab::WriteHDF5Parallel::exchange_file_ids(), moab::WriteSLAC::gather_interior_exterior(), moab::Tqdcfr::get_mesh_entities(), moab::DualTool::list_entities(), moab::Core::list_entities(), moab::Core::list_entity(), moab::DebugOutput::list_range_real(), main(), moab::WriteHDF5::ExportSet::name(), moab::WriteHDF5Parallel::negotiate_type_list(), moab::not_found(), moab::not_root_set(), moab::operator<<(), moab::ParallelComm::pack_entities(), moab::ParallelComm::pack_entity_seq(), moab::WriteHDF5Parallel::parallel_create_file(), moab::ParallelComm::print_buffer(), moab::TreeNodePrinter::print_contents(), moab::TreeNodePrinter::print_counts(), moab::Core::print_database(), moab::WriteHDF5::print_id_map(), print_memory_stats(), print_stats(), print_tag_counts(), moab::Tqdcfr::read_elements(), moab::WriteHDF5::serial_create_file(), moab::Range::str_rep(), moab::ParallelComm::unpack_entities(), moab::ParallelComm::update_remote_data(), moab::ParallelComm::update_remote_data_old(), moab::WriteVtk::write_elems(), moab::WriteHDF5::write_elems(), and moab::WriteGmsh::write_file().

{
    return entityTypeNames[this_type];
}
short int moab::CN::GetBasis ( ) [inline, static]

get the basis of the numbering system

Definition at line 532 of file CN.hpp.

References numberBasis.

{
    return numberBasis;
}
DimensionPair moab::CN::getDimPair ( int  entity_type) [static]

Get the dimension pair corresponding to a dimension.

Definition at line 50 of file CN.cpp.

References TypeDimensionMap.

Referenced by iMeshP_pushTags().

{
    return TypeDimensionMap[entity_type];
}
bool moab::CN::HasMidEdgeNodes ( const EntityType  this_type,
const int  num_verts 
) [inline, static]

true if entities of a given type and number of nodes indicates mid edge nodes are present.

Parameters:
this_typeType of entity for which sub-entity connectivity is being queried
num_vertsNumber of nodes defining entity
Returns:
bool Returns true if this_type combined with num_nodes indicates mid-edge nodes are likely

Definition at line 549 of file CN.hpp.

References HasMidNodes().

Referenced by moab::HigherOrderFactory::center_node_exist(), moab::Skinner::find_skin_vertices_2D(), and moab::ElementSequence::has_mid_edge_nodes().

{
    const int bits = HasMidNodes( this_type, num_nodes );
    return static_cast< bool >( ( bits & ( 1 << 1 ) ) >> 1 );
}
bool moab::CN::HasMidFaceNodes ( const EntityType  this_type,
const int  num_verts 
) [inline, static]

true if entities of a given type and number of nodes indicates mid face nodes are present.

Parameters:
this_typeType of entity for which sub-entity connectivity is being queried
num_vertsNumber of nodes defining entity
Returns:
bool Returns true if this_type combined with num_nodes indicates mid-face nodes are likely

Definition at line 555 of file CN.hpp.

References HasMidNodes().

Referenced by moab::HigherOrderFactory::center_node_exist(), and moab::ElementSequence::has_mid_face_nodes().

{
    const int bits = HasMidNodes( this_type, num_nodes );
    return static_cast< bool >( ( bits & ( 1 << 2 ) ) >> 2 );
}
void moab::CN::HasMidNodes ( const EntityType  this_type,
const int  num_verts,
int  mid_nodes[4] 
) [inline, static]

true if entities of a given type and number of nodes indicates mid edge/face/region nodes are present.

Parameters:
this_typeType of entity for which sub-entity connectivity is being queried
num_vertsNumber of nodes defining entity
mid_nodesIf mid_nodes[i], i=1..2 is non-zero, indicates that mid-edge (i=1), mid-face (i=2), and/or mid-region (i=3) nodes are likely

Definition at line 573 of file CN.hpp.

Referenced by moab::Skinner::find_skin_vertices_3D(), moab::AEntityFactory::get_down_adjacency_elements(), HasMidEdgeNodes(), HasMidFaceNodes(), HasMidRegionNodes(), moab::Core::high_order_node(), HONodeIndex(), HONodeParent(), moab::ReadNCDF::read_elements(), moab::Tqdcfr::BlockHeader::read_info_header(), SubEntityNodeIndices(), and moab::WriteCCMIO::write_cells_and_faces().

{
    const int bits = HasMidNodes( this_type, num_nodes );
    mid_nodes[0]   = 0;
    mid_nodes[1]   = ( bits & ( 1 << 1 ) ) >> 1;
    mid_nodes[2]   = ( bits & ( 1 << 2 ) ) >> 2;
    mid_nodes[3]   = ( bits & ( 1 << 3 ) ) >> 3;
}
int moab::CN::HasMidNodes ( const EntityType  this_type,
const int  num_verts 
) [inline, static]

Same as above, except returns a single integer with the bits, from least significant to most significant set to one if the corresponding mid nodes on sub entities of the least dimension (0) to the highest dimension (3) are present in the elment type.

Definition at line 567 of file CN.hpp.

References MAX_NODES_PER_ELEMENT, and midNodesPerType.

{
    assert( (unsigned)num_nodes <= (unsigned)MAX_NODES_PER_ELEMENT );
    return midNodesPerType[this_type][num_nodes];
}
bool moab::CN::HasMidRegionNodes ( const EntityType  this_type,
const int  num_verts 
) [inline, static]

true if entities of a given type and number of nodes indicates mid region nodes are present.

Parameters:
this_typeType of entity for which sub-entity connectivity is being queried
num_vertsNumber of nodes defining entity
Returns:
bool Returns true if this_type combined with num_nodes indicates mid-region nodes are likely

Definition at line 561 of file CN.hpp.

References HasMidNodes().

Referenced by moab::ElementSequence::has_mid_volume_nodes().

{
    const int bits = HasMidNodes( this_type, num_nodes );
    return static_cast< bool >( ( bits & ( 1 << 3 ) ) >> 3 );
}
short int moab::CN::HONodeIndex ( const EntityType  this_type,
const int  num_verts,
const int  subfacet_dim,
const int  subfacet_index 
) [static]

for an entity of this type with num_verts vertices, and a specified subfacet (dimension and index), return the index of the higher order node for that entity in this entity's connectivity array

for an entity of this type and a specified subfacet (dimension and index), return the index of the higher order node for that entity in this entity's connectivity array

Parameters:
this_typeType of entity being queried
num_vertsNumber of vertices for the entity being queried
subfacet_dimDimension of sub-entity being queried
subfacet_indexIndex of sub-entity being queried
Returns:
index Index of sub-entity's higher-order node

Definition at line 588 of file CN.cpp.

References HasMidNodes(), numberBasis, NumSubEntities(), and VerticesPerEntity().

Referenced by moab::Skinner::find_skin_vertices_2D(), moab::AEntityFactory::get_down_adjacency_elements(), and SubEntityNodeIndices().

{
    int i;
    int has_mids[4];
    HasMidNodes( this_type, num_verts, has_mids );

    // if we have no mid nodes on the subfacet_dim, we have no index
    if( subfacet_index != -1 && !has_mids[subfacet_dim] ) return -1;

    // put start index at last index (one less than the number of vertices
    // plus the index basis)
    int index = VerticesPerEntity( this_type ) - 1 + numberBasis;

    // for each subfacet dimension less than the target subfacet dim which has mid nodes,
    // add the number of subfacets of that dimension to the index
    for( i = 1; i < subfacet_dim; i++ )
        if( has_mids[i] ) index += NumSubEntities( this_type, i );

    // now add the index of this subfacet, or one if we're asking about the entity as a whole
    if( subfacet_index == -1 && has_mids[subfacet_dim] )
        // want the index of the last ho node on this subfacet
        index += NumSubEntities( this_type, subfacet_dim );

    else if( subfacet_index != -1 && has_mids[subfacet_dim] )
        index += subfacet_index + 1 - numberBasis;

    // that's it
    return index;
}
void moab::CN::HONodeParent ( EntityType  elem_type,
int  num_nodes,
int  ho_node_index,
int &  parent_dim,
int &  parent_index 
) [static]

given data about an element and a vertex in that element, return the dimension and index of the sub-entity that the vertex resolves. If it does not resolve a sub-entity, either because it's a corner node or it's not in the element, -1 is returned in both return values.

given data about an element and a vertex in that element, return the dimension and index of the sub-entity that the vertex resolves. If it does not resolve a sub-entity, either because it's a corner node or it's not in the element, -1 is returned in both return values

Parameters:
elem_typeType of entity being queried
num_nodesThe number of nodes in the element connectivity
ho_node_indexThe position of the HO node in the connectivity list (zero based)
parent_dimDimension of sub-entity high-order node resolves (returned)
parent_indexIndex of sub-entity high-order node resolves (returned)

Definition at line 625 of file CN.cpp.

References dim, Dimension(), HasMidNodes(), NumSubEntities(), and VerticesPerEntity().

Referenced by moab::HigherOrderFactory::tag_for_deletion().

{
    // begin with error values
    parent_dim = parent_index = -1;

    // given the number of verts and the element type, get the hasmidnodes solution
    int has_mids[4];
    HasMidNodes( elem_type, num_verts, has_mids );

    int index     = VerticesPerEntity( elem_type ) - 1;
    const int dim = Dimension( elem_type );

    // keep a running sum of the ho node indices for this type of element, and stop
    // when you get to the dimension which has the ho node
    for( int i = 1; i < dim; i++ )
    {
        if( has_mids[i] )
        {
            if( ho_index <= index + NumSubEntities( elem_type, i ) )
            {
                // the ho_index resolves an entity of dimension i, so set the return values
                // and break out of the loop
                parent_dim   = i;
                parent_index = ho_index - index - 1;
                return;
            }
            else
            {
                index += NumSubEntities( elem_type, i );
            }
        }
    }

    // mid region node case
    if( has_mids[dim] && ho_index == index + 1 )
    {
        parent_dim   = dim;
        parent_index = 0;
    }
}
short int moab::CN::NumSubEntities ( const EntityType  t,
const int  d 
) [static]

return the number of sub-entities bounding the entity.

Definition at line 1078 of file CN.cpp.

References MBVERTEX, mConnectivityMap, and VerticesPerEntity().

Referenced by moab::GeomUtil::box_linear_elem_overlap(), moab::Skinner::classify_2d_boundary(), moab::HigherOrderFactory::convert_sequence(), moab::HigherOrderFactory::copy_mid_edge_nodes(), moab::HigherOrderFactory::copy_mid_face_nodes(), moab::HigherOrderFactory::copy_mid_volume_nodes(), moab::Skinner::find_skin_noadj(), moab::Skinner::find_skin_vertices_3D(), gather_set_stats(), moab::MeshTopoUtil::get_bridge_adjacencies(), moab::AEntityFactory::get_down_adjacency_elements(), moab::ReadUtil::get_ordered_vertices(), HONodeIndex(), HONodeParent(), min_edge_length(), moab::HigherOrderFactory::remove_mid_edge_nodes(), moab::HigherOrderFactory::remove_mid_face_nodes(), moab::HigherOrderFactory::remove_mid_volume_nodes(), smoab::Interface::sideElements(), SideNumber(), SubEntityNodeIndices(), moab::WriteCCMIO::write_cells_and_faces(), moab::HigherOrderFactory::zero_mid_edge_nodes(), moab::HigherOrderFactory::zero_mid_face_nodes(), and moab::HigherOrderFactory::zero_mid_volume_nodes().

{
    return ( t != MBVERTEX && d > 0 ? mConnectivityMap[t][d - 1].num_sub_elements
                                    : ( d ? (short int)-1 : VerticesPerEntity( t ) ) );
}
short int moab::CN::OppositeSide ( const EntityType  parent_type,
const int  child_index,
const int  child_dim,
int &  opposite_index,
int &  opposite_dim 
) [static]

return the dimension and index of the opposite side, given parent entity type and child dimension and index. This function is only defined for certain types of parent/child types: (Parent, Child dim->Opposite dim): (Tri, 1->0), (Tri, 0->1), (Quad, 1->1), (Quad, 0->0), (Tet, 2->0), (Tet, 1->1), (Tet, 0->2), (Hex, 2->2), (Hex, 1->1)(diagonally across element), (Hex, 0->0) (diagonally across element) All other parent types and child dimensions return an error.

Parameters:
parent_typeThe type of parent element
child_typeThe type of child element
child_indexThe index of the child element
opposite_indexThe index of the opposite element
Returns:
status Returns 0 if successful, -1 if not

Definition at line 379 of file CN.cpp.

References MBEDGE, MBHEX, MBQUAD, MBTET, and MBTRI.

Referenced by moab::MeshTopoUtil::opposite_entity().

{
    switch( parent_type )
    {
        case MBEDGE:
            if( 0 != child_dim )
                return -1;
            else
                opposite_index = 1 - child_index;
            opposite_dim = 0;
            break;

        case MBTRI:
            switch( child_dim )
            {
                case 0:
                    opposite_dim   = 1;
                    opposite_index = ( child_index + 1 ) % 3;
                    break;
                case 1:
                    opposite_dim   = 0;
                    opposite_index = ( child_index + 2 ) % 3;
                    break;
                default:
                    return -1;
            }
            break;

        case MBQUAD:
            switch( child_dim )
            {
                case 0:
                case 1:
                    opposite_dim   = child_dim;
                    opposite_index = ( child_index + 2 ) % 4;
                    break;
                default:
                    return -1;
            }
            break;

        case MBTET:
            switch( child_dim )
            {
                case 0:
                    opposite_dim   = 2;
                    opposite_index = ( child_index + 1 ) % 3 + 2 * ( child_index / 3 );
                    break;
                case 1:
                    opposite_dim   = 1;
                    opposite_index = child_index < 3 ? 3 + ( child_index + 2 ) % 3 : ( child_index + 1 ) % 3;
                    break;
                case 2:
                    opposite_dim   = 0;
                    opposite_index = ( child_index + 2 ) % 3 + child_index / 3;
                    break;
                default:
                    return -1;
            }
            break;
        case MBHEX:
            opposite_dim = child_dim;
            switch( child_dim )
            {
                case 0:
                    opposite_index = child_index < 4 ? 4 + ( child_index + 2 ) % 4 : ( child_index - 2 ) % 4;
                    break;
                case 1:
                    opposite_index = 4 * ( 2 - child_index / 4 ) + ( child_index + 2 ) % 4;
                    break;
                case 2:
                    opposite_index = child_index < 4 ? ( child_index + 2 ) % 4 : 9 - child_index;
                    break;
                default:
                    return -1;
            }
            break;

        default:
            return -1;
    }

    return 0;
}
int moab::CN::permuteThis ( const EntityType  t,
const int  dim,
int *  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Permute a handle array according to permutation vector set with setPermute; permutation is done in-place.

Permute this vector.

Parameters:
tEntityType of handles in pvec
dimDimension of handles in pvec
pvecHandle array being permuted
indices_per_entNumber of indices per entity
num_entriesNumber of entities in pvec

Definition at line 1115 of file CN.cpp.

References moab::permute_this().

{
    return permute_this( t, dim, pvec, num_indices, num_entries );
}
int moab::CN::permuteThis ( const EntityType  t,
const int  dim,
unsigned int *  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Definition at line 1119 of file CN.cpp.

References moab::permute_this().

{
    return permute_this( t, dim, pvec, num_indices, num_entries );
}
int moab::CN::permuteThis ( const EntityType  t,
const int  dim,
long *  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Definition at line 1127 of file CN.cpp.

References moab::permute_this().

{
    return permute_this( t, dim, pvec, num_indices, num_entries );
}
int moab::CN::permuteThis ( const EntityType  t,
const int  dim,
void **  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Definition at line 1135 of file CN.cpp.

References moab::permute_this().

{
    return permute_this( t, dim, pvec, num_indices, num_entries );
}
void moab::CN::resetPermutation ( const EntityType  t,
const int  dim 
) [inline, static]

Reset permutation or reverse permutation vector.

Parameters:
tEntityType whose permutation vector is being reset
dimDimension of facets being reset; if -1 is input, all dimensions are reset

Definition at line 606 of file CN.hpp.

References dim, moab::MAX_SUB_ENTITIES, permuteVec, revPermuteVec, and t.

{
    if( -1 == dim )
    {
        for( unsigned int i = 0; i < 3; i++ )
            resetPermutation( t, i );
        return;
    }

    for( short unsigned int i = 0; i < MAX_SUB_ENTITIES; i++ )
    {
        revPermuteVec[t][dim][i] = permuteVec[t][dim][i] = i;
    }

    revPermuteVec[t][dim][MAX_SUB_ENTITIES] = permuteVec[t][dim][MAX_SUB_ENTITIES] = MAX_SUB_ENTITIES + 1;
}
int moab::CN::revPermuteThis ( const EntityType  t,
const int  dim,
int *  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Reverse permute a handle array according to reverse permutation vector set with setPermute; reverse permutation is done in-place.

Reverse permute this vector.

Parameters:
tEntityType of handles in pvec
dimDimension of handles in pvec
pvecHandle array being reverse permuted
indices_per_entNumber of indices per entity
num_entriesNumber of entities in pvec

Definition at line 1145 of file CN.cpp.

References moab::rev_permute_this().

{
    return rev_permute_this( t, dim, pvec, num_indices, num_entries );
}
int moab::CN::revPermuteThis ( const EntityType  t,
const int  dim,
unsigned int *  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Definition at line 1153 of file CN.cpp.

References moab::rev_permute_this().

{
    return rev_permute_this( t, dim, pvec, num_indices, num_entries );
}
int moab::CN::revPermuteThis ( const EntityType  t,
const int  dim,
long *  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Definition at line 1161 of file CN.cpp.

References moab::rev_permute_this().

{
    return rev_permute_this( t, dim, pvec, num_indices, num_entries );
}
int moab::CN::revPermuteThis ( const EntityType  t,
const int  dim,
void **  pvec,
const int  indices_per_ent,
const int  num_entries 
) [inline, static]

Definition at line 1169 of file CN.cpp.

References moab::rev_permute_this().

{
    return rev_permute_this( t, dim, pvec, num_indices, num_entries );
}
void moab::CN::SetBasis ( const int  in_basis) [static]

set the basis of the numbering system

set the basis of the numbering system; may or may not do things besides setting the member variable

Definition at line 44 of file CN.cpp.

References numberBasis.

{
    numberBasis = in_basis;
}
void moab::CN::setPermutation ( const EntityType  t,
const int  dim,
short int *  pvec,
const int  num_entries,
const bool  is_reverse = false 
) [inline, static]

Set permutation or reverse permutation vector Forward permutation is from CN's numbering into application's ordering; that is, if i is CN's index, pvec[i] is application's index. This function stores the permutation vector for this type and facet dimension, which then is used in calls to permuteThis or revPermuteThis.

Set permutation or reverse permutation vector.

Parameters:
tEntityType for which to set permutation
dimDimension of facets whose permutation array is being set
pvecPermutation array
num_entriesNumber of indicies in permutation array
is_reverseArray is reverse permutation

Definition at line 583 of file CN.hpp.

References dim, moab::MAX_SUB_ENTITIES, permuteVec, revPermuteVec, and t.

{
    short int *this_vec = permuteVec[t][dim], *that_vec = revPermuteVec[t][dim];
    if( is_reverse )
    {
        this_vec = revPermuteVec[t][dim];
        that_vec = permuteVec[t][dim];
    }

    for( short int i = 0; i < num_entries; i++ )
    {
        this_vec[i]       = pvec[i];
        that_vec[pvec[i]] = i;
    }

    this_vec[MAX_SUB_ENTITIES] = that_vec[MAX_SUB_ENTITIES] = (short)num_entries;
}
short int moab::CN::SideNumber ( const EntityType  parent_type,
const int *  parent_conn,
const int *  child_conn,
const int  child_num_verts,
const int  child_dim,
int &  side_number,
int &  sense,
int &  offset 
) [static]

return the side index represented in the input sub-entity connectivity in the input parent entity connectivity array.

Parameters:
parent_connConnectivity of parent entity being queried
parent_typeEntity type of parent entity
child_connConnectivity of child whose index is being queried
child_num_vertsNumber of vertices in child_conn
child_dimDimension of child entity being queried
side_numberSide number of child entity (returned)
senseSense of child entity with respect to order in child_conn (returned)
offsetOffset of child_conn with respect to canonical ordering data (returned)
Returns:
status Returns zero if successful, -1 if not

Definition at line 240 of file CN.cpp.

References moab::side_number().

Referenced by moab::Skinner::create_side(), moab::Skinner::face_reversed(), moab::Skinner::find_skin_vertices_2D(), moab::Skinner::find_skin_vertices_3D(), moab::Core::high_order_node(), orient_faces_outward(), moab::GeomTopoTool::restore_topology_from_adjacency(), SphereDecomp::retrieve_subdiv_verts(), moab::side_number(), moab::Core::side_number(), SubEntityNodeIndices(), and moab::WriteCCMIO::write_cells_and_faces().

{
    return side_number( parent_conn, parent_type, child_conn, child_num_verts, child_dim, side_no, sense, offset );
}
short int moab::CN::SideNumber ( const EntityType  parent_type,
const unsigned int *  parent_conn,
const unsigned int *  child_conn,
const int  child_num_verts,
const int  child_dim,
int &  side_number,
int &  sense,
int &  offset 
) [static]

Definition at line 252 of file CN.cpp.

References moab::side_number().

{
    return side_number( parent_conn, parent_type, child_conn, child_num_verts, child_dim, side_no, sense, offset );
}
short int moab::CN::SideNumber ( const EntityType  parent_type,
const long *  parent_conn,
const long *  child_conn,
const int  child_num_verts,
const int  child_dim,
int &  side_number,
int &  sense,
int &  offset 
) [static]

Definition at line 263 of file CN.cpp.

References moab::side_number().

{
    return side_number( parent_conn, parent_type, child_conn, child_num_verts, child_dim, side_no, sense, offset );
}
short int moab::CN::SideNumber ( const EntityType  parent_type,
const unsigned long *  parent_conn,
const unsigned long *  child_conn,
const int  child_num_verts,
const int  child_dim,
int &  side_number,
int &  sense,
int &  offset 
) [static]

Definition at line 274 of file CN.cpp.

References moab::side_number().

{
    return side_number( parent_conn, parent_type, child_conn, child_num_verts, child_dim, side_no, sense, offset );
}
short int moab::CN::SideNumber ( const EntityType  parent_type,
const unsigned long long *  parent_conn,
const unsigned long long *  child_conn,
const int  child_num_verts,
const int  child_dim,
int &  side_number,
int &  sense,
int &  offset 
) [static]

Definition at line 286 of file CN.cpp.

References moab::side_number().

{
    return side_number( parent_conn, parent_type, child_conn, child_num_verts, child_dim, side_no, sense, offset );
}
short int moab::CN::SideNumber ( const EntityType  parent_type,
void *const *  parent_conn,
void *const *  child_conn,
const int  child_num_verts,
const int  child_dim,
int &  side_number,
int &  sense,
int &  offset 
) [static]

Definition at line 299 of file CN.cpp.

References moab::side_number().

{
    return side_number( parent_conn, parent_type, child_conn, child_num_verts, child_dim, side_no, sense, offset );
}
short int moab::CN::SideNumber ( const EntityType  parent_type,
const int *  child_conn_indices,
const int  child_num_verts,
const int  child_dim,
int &  side_number,
int &  sense,
int &  offset 
) [static]

return the side index represented in the input sub-entity connectivity

Parameters:
parent_typeEntity type of parent entity
child_conn_indicesChild connectivity to query, specified as indices into the connectivity list of the parent.
child_num_vertsNumber of values in child_conn_indices
child_dimDimension of child entity being queried
side_numberSide number of child entity (returned)
senseSense of child entity with respect to order in child_conn (returned)
offsetOffset of child_conn with respect to canonical ordering data (returned)
Returns:
status Returns zero if successful, -1 if not

Definition at line 311 of file CN.cpp.

References ConnectivityMatch(), Dimension(), NumSubEntities(), SubEntityType(), SubEntityVertexIndices(), and VerticesPerEntity().

{
    int parent_dim       = Dimension( parent_type );
    int parent_num_verts = VerticesPerEntity( parent_type );

    // degenerate case (vertex), output == input
    if( child_dim == 0 )
    {
        if( child_num_verts != 1 ) return -1;
        side_no = *child_conn_indices;
        sense = offset = 0;
    }

    // given a parent and child element, find the corresponding side number

    // dim_diff should be -1, 0 or 1 (same dimension, one less dimension, two less, resp.)
    if( child_dim > parent_dim || child_dim < 0 ) return -1;

    // different types of same dimension won't be the same
    if( parent_dim == child_dim && parent_num_verts != child_num_verts )
    {
        side_no = -1;
        sense   = 0;
        return 0;
    }

    // loop over the sub-elements, comparing to child connectivity
    int sub_conn_indices[10];
    for( int i = 0; i < NumSubEntities( parent_type, child_dim ); i++ )
    {
        int sub_size = VerticesPerEntity( SubEntityType( parent_type, child_dim, i ) );
        if( sub_size != child_num_verts ) continue;

        SubEntityVertexIndices( parent_type, child_dim, i, sub_conn_indices );
        bool they_match = ConnectivityMatch( child_conn_indices, sub_conn_indices, sub_size, sense, offset );
        if( they_match )
        {
            side_no = i;
            return 0;
        }
    }

    // if we've gotten here, we don't match
    side_no = -1;

    // return value is no success
    return 1;
}
void moab::CN::SubEntityConn ( const void *  parent_conn,
const EntityType  parent_type,
const int  sub_dimension,
const int  sub_index,
void *  sub_entity_conn,
int &  num_sub_vertices 
) [static]

return the vertices of the specified sub entity

Parameters:
parent_connConnectivity of parent entity
parent_typeEntity type of parent entity
sub_dimensionDimension of sub-entity being queried
sub_indexIndex of sub-entity being queried
sub_entity_connConnectivity of sub-entity, based on parent_conn and canonical ordering for parent_type
num_sub_verticesNumber of vertices in sub-entity

Definition at line 119 of file CN.cpp.

References moab::MAX_SUB_ENTITY_VERTICES, SubEntityType(), SubEntityVertexIndices(), and VerticesPerEntity().

Referenced by moab::WriteCCMIO::write_cells_and_faces().

{
    static int sub_indices[MAX_SUB_ENTITY_VERTICES];

    SubEntityVertexIndices( parent_type, sub_dimension, sub_index, sub_indices );

    num_sub_vertices       = VerticesPerEntity( SubEntityType( parent_type, sub_dimension, sub_index ) );
    void** parent_conn_ptr = static_cast< void** >( const_cast< void* >( parent_conn ) );
    void** sub_conn_ptr    = static_cast< void** >( sub_entity_conn );
    for( int i = 0; i < num_sub_vertices; i++ )
        sub_conn_ptr[i] = parent_conn_ptr[sub_indices[i]];
}
void moab::CN::SubEntityNodeIndices ( const EntityType  this_topo,
const int  num_nodes,
const int  sub_dimension,
const int  sub_index,
EntityType &  sub_entity_topo,
int &  num_sub_entity_nodes,
int  sub_entity_conn[] 
) [static]

return the node indices of the specified sub-entity.

Parameters:
this_topoThe topology of the queried element type
num_nodesThe number of nodes in the queried element type.
sub_dimensionDimension of sub-entity
sub_indexIndex of sub-entity
sub_entity_topo(Output) Topology of requested sub-entity.
num_sub_entity_nodes(Output) Number of nodes in the requested sub-entity.
sub_entity_conn(Output) Connectivity of sub-entity

Definition at line 66 of file CN.cpp.

References moab::CN::ConnMap::conn, dim, HasMidNodes(), HONodeIndex(), moab::MAX_SUB_ENTITY_VERTICES, MBVERTEX, mConnectivityMap, NumSubEntities(), SideNumber(), SubEntityType(), SubEntityVertexIndices(), and VerticesPerEntity().

Referenced by moab::Skinner::classify_2d_boundary(), moab::Skinner::create_side(), moab::ReadNCDF::create_ss_elements(), moab::Skinner::find_skin_noadj(), and moab::Skinner::find_skin_vertices_3D().

{
    // If asked for a node, the special case...
    if( sub_dimension == 0 )
    {
        assert( sub_index < num_nodes );
        subentity_topo       = MBVERTEX;
        num_sub_entity_nodes = 1;
        sub_entity_conn[0]   = sub_index;
        return;
    }

    const int ho_bits    = HasMidNodes( this_topo, num_nodes );
    subentity_topo       = SubEntityType( this_topo, sub_dimension, sub_index );
    num_sub_entity_nodes = VerticesPerEntity( subentity_topo );
    const short* corners = mConnectivityMap[this_topo][sub_dimension - 1].conn[sub_index];
    std::copy( corners, corners + num_sub_entity_nodes, sub_entity_conn );

    int sub_sub_corners[MAX_SUB_ENTITY_VERTICES];
    int side, sense, offset;
    for( int dim = 1; dim <= sub_dimension; ++dim )
    {
        if( !( ho_bits & ( 1 << dim ) ) ) continue;

        const short num_mid = NumSubEntities( subentity_topo, dim );
        for( int i = 0; i < num_mid; ++i )
        {
            const EntityType sub_sub_topo = SubEntityType( subentity_topo, dim, i );
            const int sub_sub_num_vert    = VerticesPerEntity( sub_sub_topo );
            SubEntityVertexIndices( subentity_topo, dim, i, sub_sub_corners );

            for( int j = 0; j < sub_sub_num_vert; ++j )
                sub_sub_corners[j] = corners[sub_sub_corners[j]];
            SideNumber( this_topo, sub_sub_corners, sub_sub_num_vert, dim, side, sense, offset );
            sub_entity_conn[num_sub_entity_nodes++] = HONodeIndex( this_topo, num_nodes, dim, side );
        }
    }
}
EntityType moab::CN::SubEntityType ( const EntityType  this_type,
const int  sub_dimension,
const int  index 
) [static]

return the type of a particular sub-entity.

Parameters:
this_typeType of entity for which sub-entity type is being queried
sub_dimensionTopological dimension of sub-entity whose type is being queried
indexIndex of sub-entity whose type is being queried
Returns:
type Entity type of sub-entity with specified dimension and index

Definition at line 1085 of file CN.cpp.

References Dimension(), MBVERTEX, and mConnectivityMap.

Referenced by moab::GeomUtil::box_linear_elem_overlap(), moab::MeshTopoUtil::get_bridge_adjacencies(), SideNumber(), SubEntityConn(), and SubEntityNodeIndices().

{
    return ( !sub_dimension ? MBVERTEX
                            : ( Dimension( this_type ) == sub_dimension && 0 == index
                                    ? this_type
                                    : mConnectivityMap[this_type][sub_dimension - 1].target_type[index] ) );
}
void moab::CN::SubEntityVertexIndices ( const EntityType  this_type,
const int  sub_dimension,
const int  sub_index,
int  sub_entity_conn[] 
) [inline, static]

return the vertex indices of the specified sub-entity.

return the connectivity of the specified sub-entity.

Parameters:
this_typeType of entity for which sub-entity connectivity is being queried
sub_dimensionDimension of sub-entity
sub_indexIndex of sub-entity
sub_entity_connConnectivity of sub-entity (returned to calling function)

Definition at line 538 of file CN.hpp.

Referenced by moab::GeomUtil::box_linear_elem_overlap(), moab::Skinner::classify_2d_boundary(), moab::Skinner::find_skin_vertices_3D(), gather_set_stats(), moab::MeshTopoUtil::get_bridge_adjacencies(), moab::ReadUtil::get_ordered_vertices(), min_edge_length(), SideNumber(), SubEntityConn(), and SubEntityNodeIndices().

{
    EntityType type;
    int n;
    const short* indices = SubEntityVertexIndices( this_type, sub_dimension, index, type, n );
    std::copy( indices, indices + n, sub_entity_conn );
}
const short * moab::CN::SubEntityVertexIndices ( const EntityType  this_type,
const int  sub_dimension,
const int  sub_index,
EntityType &  sub_type,
int &  num_sub_ent_vertices 
) [static]

return the vertex indices of the specified sub-entity.

Parameters:
this_typeType of entity for which sub-entity connectivity is being queried
sub_dimensionDimension of sub-entity
sub_indexIndex of sub-entity
num_sub_ent_verticesthe number of vertices in the sub-entity

Definition at line 1093 of file CN.cpp.

References moab::CN::ConnMap::conn, increasingInts, MBVERTEX, mConnectivityMap, moab::CN::ConnMap::num_corners_per_sub_element, and moab::CN::ConnMap::target_type.

{
    if( sub_dimension == 0 )
    {
        n        = 1;
        sub_type = MBVERTEX;
        return increasingInts + index;
    }
    else
    {
        const CN::ConnMap& map = mConnectivityMap[this_type][sub_dimension - 1];
        sub_type               = map.target_type[index];
        n                      = map.num_corners_per_sub_element[index];
        return map.conn[index];
    }
}
static void moab::CN::SwitchBasis ( const int  old_basis,
const int  new_basis 
) [static, private]

switch the basis

short int moab::CN::VerticesPerEntity ( const EntityType  t) [static]

return the number of (corner) vertices contained in the specified type.

Definition at line 1071 of file CN.cpp.

References MBVERTEX, and mConnectivityMap.

Referenced by moab::Skinner::add_adjacency(), moab::HigherOrderFactory::add_mid_edge_nodes(), moab::HigherOrderFactory::add_mid_face_nodes(), moab::HigherOrderFactory::add_mid_volume_nodes(), moab::GeomUtil::box_linear_elem_overlap(), moab::HigherOrderFactory::center_node_exist(), moab::AEntityFactory::check_equiv_entities(), moab::Skinner::classify_2d_boundary(), SphereDecomp::compute_nodes(), moab::HigherOrderFactory::convert_sequence(), moab::HigherOrderFactory::copy_corner_nodes(), moab::HigherOrderFactory::copy_mid_edge_nodes(), moab::HigherOrderFactory::copy_mid_face_nodes(), moab::HigherOrderFactory::copy_mid_volume_nodes(), moab::Core::create_element(), moab::ReadIDEAS::create_elements(), moab::Skinner::create_side(), moab::ReadNCDF::create_sideset_element(), moab::AEntityFactory::entities_equivalent(), moab::Skinner::face_reversed(), moab::Skinner::find_match(), moab::Skinner::find_skin_noadj(), moab::Skinner::find_skin_vertices_3D(), moab::WriteVtk::gather_mesh(), moab::MeshTopoUtil::get_bridge_adjacencies(), moab::UnstructuredElemSeq::get_connectivity(), moab::Core::get_connectivity_by_type(), moab::ReadUtil::get_ordered_vertices(), moab::WriteNCDF::get_valid_sides(), moab::Core::high_order_node(), HONodeIndex(), HONodeParent(), moab::HigherOrderFactory::initialize_map(), moab::ReadSms::load_file_impl(), moab::WriteGMV::local_write_mesh(), NumSubEntities(), moab::Tqdcfr::read_block(), moab::ReadNASTRAN::read_element(), moab::Tqdcfr::BlockHeader::read_info_header(), moab::HigherOrderFactory::remove_mid_edge_nodes(), moab::HigherOrderFactory::remove_mid_face_nodes(), moab::HigherOrderFactory::remove_mid_volume_nodes(), moab::side_number(), SideNumber(), moab::ExoIIUtil::static_get_element_type(), SubEntityConn(), SubEntityNodeIndices(), moab::WriteVtk::write_elems(), moab::HigherOrderFactory::zero_mid_edge_nodes(), moab::HigherOrderFactory::zero_mid_face_nodes(), and moab::HigherOrderFactory::zero_mid_volume_nodes().

{
    return ( MBVERTEX == t
                 ? (short int)1
                 : mConnectivityMap[t][mConnectivityMap[t][0].topo_dimension - 1].num_corners_per_sub_element[0] );
}

Member Data Documentation

const char * moab::CN::entityTypeNames [static, private]
Initial value:
 { "Vertex", "Edge",  "Tri", "Quad",       "Polygon",   "Tet",    "Pyramid",
                                      "Prism",  "Knife", "Hex", "Polyhedron", "EntitySet", "MaxType" }

entity names

Definition at line 60 of file CN.hpp.

Referenced by EntityTypeFromName(), and EntityTypeName().

short moab::CN::increasingInts [static, private]
Initial value:
 { 0,  1,  2,  3,  4,  5,  6,  7,  8,  9,  10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
                               20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39 }

Definition at line 71 of file CN.hpp.

Referenced by SubEntityVertexIndices().

const CN::ConnMap moab::CN::mConnectivityMap [static]

Definition at line 122 of file CN.hpp.

Referenced by moab::HigherOrderFactory::add_mid_edge_nodes(), moab::HigherOrderFactory::add_mid_face_nodes(), moab::HigherOrderFactory::add_mid_volume_nodes(), AdjacentSubEntities(), moab::HigherOrderFactory::center_node_exist(), moab::Skinner::classify_2d_boundary(), Dimension(), moab::AEntityFactory::get_down_adjacency_elements(), moab::Core::high_order_node(), moab::HigherOrderFactory::initialize_map(), moab::LinearHex::normalFcn(), moab::LinearTet::normalFcn(), moab::LinearQuad::normalFcn(), moab::LinearTri::normalFcn(), NumSubEntities(), moab::Core::side_element(), SubEntityNodeIndices(), SubEntityType(), SubEntityVertexIndices(), and VerticesPerEntity().

const unsigned char moab::CN::midNodesPerType [static]
Initial value:
 {
    
    { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, E, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, F, 0, E, E | F, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, F, 0, 0, E, E | F, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, R, 0, 0, F, F | R, E, E | R, 0, 0, E | F, E | F | R, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, 0, R, 0, 0, 0, F, F | R, 0, E, E | R, 0, 0, 0, E | F, E | F | R, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, 0, 0, R, 0, 0, 0, F, F | R, 0, 0, E, E | R, 0, 0, 0, E | F, E | F | R, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, 0, 0, 0, R, 0, 0, 0, F, F | R, 0, 0, 0, E, E | R, 0, 0, 0, E | F, E | F | R, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, 0, 0, 0, 0, R, 0, 0, 0, 0, F, F | R, 0, 0, 0, 0, E, E | R, 0, 0, 0, 0, E | F, E | F | R },
    
    { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
    
    { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 },
}

Definition at line 142 of file CN.hpp.

Referenced by HasMidNodes().

const CN::UpConnMap moab::CN::mUpConnMap [static]

Definition at line 139 of file CN.hpp.

short int moab::CN::numberBasis = 0 [static, private]

the basis of the numbering system (normally 0 or 1, 0 by default)

Definition at line 66 of file CN.hpp.

Referenced by GetBasis(), HONodeIndex(), and SetBasis().

short int moab::CN::permuteVec [static]

Permutation and reverse permutation vectors.

Definition at line 145 of file CN.hpp.

Referenced by moab::permute_this(), resetPermutation(), and setPermutation().

short int moab::CN::revPermuteVec [static]

Definition at line 146 of file CN.hpp.

Referenced by resetPermutation(), moab::rev_permute_this(), and setPermutation().

const DimensionPair moab::CN::TypeDimensionMap [static]
Initial value:
 {
    DimensionPair( MBVERTEX, MBVERTEX ),       DimensionPair( MBEDGE, MBEDGE ),
    DimensionPair( MBTRI, MBPOLYGON ),         DimensionPair( MBTET, MBPOLYHEDRON ),
    DimensionPair( MBENTITYSET, MBENTITYSET ), DimensionPair( MBMAXTYPE, MBMAXTYPE ) }

this const vector defines the starting and ending EntityType for each dimension, e.g. TypeDimensionMap[2] returns a pair of EntityTypes bounding dimension 2.

Definition at line 151 of file CN.hpp.

Referenced by moab::OrientedBox::covariance_data_from_tris(), moab::ReadHDF5::delete_non_side_elements(), moab::MeshSet::FIRST_OF_DIM(), moab::AEntityFactory::get_associated_meshsets(), moab::Core::get_entities_by_dimension(), moab::RangeSetIterator::get_next_by_dimension(), moab::Core::get_number_entities_by_dimension(), moab::ParallelComm::get_shared_entities(), moab::AEntityFactory::get_up_adjacency_elements(), moab::AEntityFactory::get_zero_to_n_elements(), getDimPair(), moab::Skinner::initialize(), moab::MeshSet::LAST_OF_DIM(), moab::WriteGMV::local_write_mesh(), moab::Range::num_of_dimension(), moab::ParallelComm::resolve_shared_ents(), moab::Range::subset_by_dimension(), and moab::ParallelMergeMesh::TagSharedElements().

List of all members.

The documentation for this class was generated from the following files:
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