dump_sets.c

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#include "mhdf.h"
#include <stdio.h>
#include <stdlib.h>
#include <H5Tpublic.h>

#define CHECK                                                                                                 \
    do                                                                                                        \
    {                                                                                                         \
        if( mhdf_isError( &status ) )                                                                         \
        {                                                                                                     \
            fprintf( stderr, "mhdf error at %s:%d : \"%s\"\n", __FILE__, __LINE__, mhdf_message( &status ) ); \
            exit( 2 );                                                                                        \
        }                                                                                                     \
    } while( 0 )

void dump_sets( mhdf_FileHandle file );
void dump_set_contents( long first, long num_sets, const int* flags, const long* end_indices, const long* contents );
void dump_set_list( long id, const long* array, long count );
void dump_set_ranges( long id, const long* array, long count );

int WIDTH;

int main( int argc, char* argv[] )
{
    mhdf_Status status;
    mhdf_FileHandle file;
    unsigned long max_id;

    if( argc != 2 )
    {
        fprintf( stderr, "Usage: %s <input_file>\n", argv[0] );
        return 1;
    }

    file = mhdf_openFile( argv[1], 0, &max_id, -1, &status );
    CHECK;

    WIDTH = 1;
    while( max_id >= 10 )
    {
        max_id /= 10;
        ++WIDTH;
    }
    dump_sets( file );
    mhdf_closeFile( file, &status );
    CHECK;
    return 0;
}

void dump_sets( mhdf_FileHandle file )
{
    long *end_indices, *data, *new_data;
    int* flags;
    long num_sets, first, num_data;
    hid_t meta, handle;
    mhdf_Status status;

    meta = mhdf_openSetMeta( file, &num_sets, &first, &status );
    CHECK;
    end_indices = malloc( num_sets * sizeof( long ) );

    printf( "\nSet IDs: %ld - %ld\n", first, first + num_sets - 1 );

    puts( "\nSets:\n" );
    flags = malloc( num_sets * sizeof( int ) );
    mhdf_readSetFlags( meta, 0, num_sets, H5T_NATIVE_INT, flags, &status );
    CHECK;
    mhdf_readSetContentEndIndices( meta, 0, num_sets, H5T_NATIVE_LONG, end_indices, &status );
    CHECK;
    handle = mhdf_openSetData( file, &num_data, &status );
    CHECK;
    data = malloc( num_data * sizeof( long ) );
    mhdf_readSetData( handle, 0, num_data, H5T_NATIVE_LONG, data, &status );
    CHECK;
    mhdf_closeData( file, handle, &status );
    CHECK;
    dump_set_contents( first, num_sets, flags, end_indices, data );
    free( flags );

    puts( "\nSet Children:\n" );
    mhdf_readSetChildEndIndices( meta, 0, num_sets, H5T_NATIVE_LONG, end_indices, &status );
    CHECK;
    handle = mhdf_openSetChildren( file, &num_data, &status );
    CHECK;
    new_data = realloc( data, num_data * sizeof( long ) );
    if( !new_data )
    {
        fprintf( stderr, "dump_sets.c::dump_sets(): reallocation of data failed\n" );
        free( data );
        free( end_indices );
        mhdf_closeData( file, handle, &status );
        CHECK;
        mhdf_closeData( file, meta, &status );
        CHECK;
        return;
    }
    else
        data = new_data;
    mhdf_readSetParentsChildren( handle, 0, num_data, H5T_NATIVE_LONG, data, &status );
    CHECK;
    mhdf_closeData( file, handle, &status );
    CHECK;
    dump_set_contents( first, num_sets, NULL, end_indices, data );

    puts( "\nSet Parents:\n" );
    mhdf_readSetParentEndIndices( meta, 0, num_sets, H5T_NATIVE_LONG, end_indices, &status );
    CHECK;
    handle = mhdf_openSetParents( file, &num_data, &status );
    CHECK;
    new_data = realloc( data, num_data * sizeof( long ) );
    if( !new_data )
    {
        fprintf( stderr, "dump_sets.c::dump_sets(): reallocation of data failed\n" );
        free( data );
        free( end_indices );
        mhdf_closeData( file, handle, &status );
        CHECK;
        mhdf_closeData( file, meta, &status );
        CHECK;
        return;
    }
    else
        data = new_data;
    mhdf_readSetParentsChildren( handle, 0, num_data, H5T_NATIVE_LONG, data, &status );
    CHECK;
    mhdf_closeData( file, handle, &status );
    CHECK;
    dump_set_contents( first, num_sets, NULL, end_indices, data );

    free( end_indices );
    free( data );
    mhdf_closeData( file, meta, &status );
    CHECK;
}

void dump_set_contents( long first, long num_sets, const int* flags, const long* end_indices, const long* contents )
{
    long prev = -1;
    long i, end;

    for( i = 0; i < num_sets; ++i )
    {
        end = end_indices[i];
        if( end < prev )
        {
            fprintf( stderr, "Invalid end index for set %ld (ID %ld): %ld following %ld\n", i, first + i, end, prev );
            exit( 2 );
        }
        if( flags && ( flags[i] & mhdf_SET_RANGE_BIT ) )
        {
            dump_set_ranges( i + first, contents + prev + 1, end - prev );
        }
        else
        {
            dump_set_list( i + first, contents + prev + 1, end - prev );
        }
        prev = end;
    }
}

void dump_set_list( long id, const long* array, long count )
{
    long i;

    if( !count ) return; /* skip empty sets */

    printf( "%*ld: %ld", WIDTH, id, array[0] );
    for( i = 1; i < count; ++i )
        printf( ", %ld", array[i] );
    printf( " (%ld)\n", count );
}

void dump_set_ranges( long id, const long* array, long count )
{
    long i, n = 0;

    if( !count ) return; /* skip empty sets */
    printf( "%*ld:", WIDTH, id );
    if( count % 2 )
    {
        puts( " <INVALID DATA LENGTH FOR RANGED LIST>\n" );
        return;
    }

    for( i = 0; i < count; i += 2 )
    {
        if( array[i + 1] > 1 )
            printf( " %ld-%ld", array[i], array[i] + array[i + 1] - 1 );
        else
            printf( " %ld", array[i] );
        if( i + 2 < count ) putchar( ',' );
        n += array[i + 1];
    }
    printf( " (%ld)\n", n );
}