= 2016

@article{cuilliere2016,
  title={A new approach to automatic and a priori mesh adaptation around circular holes for finite element analysis},
  author={Cuilli{\`e}re, Jean-Christophe and Fran{\c{c}}ois, Vincent and Lacroix, R{\'e}mi},
  journal={Computer-Aided Design},
  volume={77},
  pages={18--45},
  year={2016},
  publisher={Elsevier}
}

= 2015

@article{cai2015a,
  title={One-to-one sweeping based on harmonic ST mappings of facet meshes and their cages},
  author={Cai, Shengyong and Tautges, Timothy J},
  journal={Engineering with Computers},
  volume={31},
  number={3},
  pages={439--452},
  year={2015},
  publisher={Springer}
}

@article{cai2015b,
  title={Optimizing Corner Assignment of Submap Surfaces},
  author={Cai, Shengyong and Tautges, Timothy J},
  journal={Procedia Engineering},
  volume={124},
  pages={83--95},
  year={2015},
  publisher={Elsevier}
}

@article{ray2015,
  title={Array-Based Hierarchical Mesh Generation in Parallel},
  author={Ray, Navamita and Grindeanu, Iulian and Zhao, Xinglin and Mahadevan, Vijay and Jiao, Xiangmin},
  journal={Procedia Engineering},
  volume={124},
  pages={291--303},
  year={2015},
  publisher={Elsevier}
}

@techreport{merzari2015,
  title={Multi-Physics Demonstration Problem with the {SHARP} Reactor Simulation Toolkit},
  author={Merzari, E and Shemon, ER and Yu, YQ and Thomas, JW and Obabko, A and Jain, Rajeev and Mahadevan, Vijay and Tautges, Timothy and Solberg, Jerome and Ferencz, Robert Mark and others},
  year={2015},
  institution={Argonne National Laboratory (ANL)}
}

@article{dyedov2015,
  title={{AHF:} array-based half-facet data structure for mixed-dimensional and non-manifold meshes},
  author={Dyedov, Vladimir and Ray, Navamita and Einstein, Daniel and Jiao, Xiangmin and Tautges, Timothy J},
  journal={Engineering with Computers},
  volume={31},
  number={3},
  pages={389--404},
  year={2015},
  publisher={Springer}
}

@article{zhao2015,
  title={Conformal and Non-conformal Adaptive Mesh Refinement with Hierarchical Array-based Half-Facet Data Structures},
  author={Zhao, Xinglin and Conley, Rebecca and Ray, Navamita and Mahadevan, Vijay S and Jiao, Xiangmin},
  journal={Procedia Engineering},
  volume={124},
  pages={304--316},
  year={2015},
  publisher={Elsevier}
}

@phdthesis{cai2015thesis,
  title={Algorithmic Improvements to Sweeping and Multi-Sweeping Volume Mesh Generation},
  author={Cai, Shengyong},
  year={2015},
  school={CD-Adapco}
}

@inproceedings{jain2015a,
	title={Simplying Workflow for Reactor Assembly and Full-Core Modeling},
	author={Jain, Rajeev and Mahadevan, Vijay and Robert O'Bara},
	booktitle={Int. Conf. on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2015), Nashville, TN, 19--23 April 2015},
  year={2015}
}

@inproceedings{jain2015b,
  title={Scalable Mesh Generation for {HPC} Applications},
  author={Jain, Rajeev and Ray, Navamita and Grindeanu, Iulian and Wu, Danqing and Mahadevan, Vijay},
  booktitle={Proceedings of the 27th Annual Supercomputing Conference (SC15)},
  year={2015}
}

@article{tierney2015,
  title={Interface Management for Automating Finite Element Analysis Workflows},
  author={Tierney, Christopher M and Nolan, Declan C and Robinson, Trevor T and Armstrong, Cecil G},
  journal={Computer-Aided Design and Applications},
  pages={1--11},
  year={2015},
  publisher={Taylor \& Francis}
}

= 2014

@article{mahadevan2014a,
  title={High-resolution coupled physics solvers for analysing fine-scale nuclear reactor design problems},
  author={Mahadevan, Vijay S and Merzari, Elia and Tautges, Timothy and Jain, Rajeev and Obabko, Aleksandr and Smith, Michael and Fischer, Paul},
  journal={Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences},
  volume={372},
  number={2021},
  pages={20130381},
  year={2014},
  publisher={The Royal Society}
}

@techreport{mahadevan2014b,
  title={{C}oupled {P}hysics {E}nvironment ({CouPE}) library-Design, Implementation, and Release},
  author={Mahadevan, Vijay S},
  year={2014},
  institution={Argonne National Laboratory (ANL)}
}

@article{lu2014,
  title={Geometric reasoning in sketch-based volumetric decomposition framework for hexahedral meshing},
  author={Lu, Jean Hsiang-Chun and Song, Inho and Quadros, William Roshan and Shimada, Kenji},
  journal={Engineering with Computers},
  volume={30},
  number={2},
  pages={237--252},
  year={2014},
  publisher={Springer}
}

@incollection{jain2014a,
  title={{PostBL}: Post-mesh boundary layer mesh generation tool},
  author={Jain, Rajeev and Tautges, Timothy J},
  booktitle={Proceedings of the 22nd International Meshing Roundtable},
  pages={331--348},
  year={2014},
  publisher={Springer}
}

@article{jain2014b,
  title={Generating unstructured nuclear reactor core meshes in parallel},
  author={Jain, Rajeev and Tautges, Timothy J},
  journal={Procedia Engineering},
  volume={82},
  pages={351--363},
  year={2014},
  publisher={Elsevier}
}

@inproceedings{jain2014c,
  title={{NEAMS MeshKit}: {N}uclear Reactor Mesh Generation Solutions},
  author={Jain, Rajeev and Tautges, Timothy J},
  booktitle={Proceedings of International Congress on the Advances in Nuclear Power Plants (ICAPP), Charlotte, NC},
  pages={6--9},
  year={2014},
  month={April}
}

@techreport{jain2014d,
  title={Meshkit},
  author={Jain, R and Tautges, TJ},
  year={2014},
  institution={Argonne National Laboratory (ANL)}
}

@article{kaczmarczyk2014,
  title={Three-dimensional brittle fracture: configurational-force-driven crack propagation},
  author={Kaczmarczyk, {\L}ukasz and Nezhad, Mohaddeseh Mousavi and Pearce, Chris},
  journal={International Journal for Numerical Methods in Engineering},
  volume={97},
  number={7},
  pages={531--550},
  year={2014},
  publisher={Wiley Online Library}
}

@techreport{tautges2014,
  title={Mesh Copy/Move/Merge Tool for Reactor Simulation Applications},
  author={Tautges, Timothy J and Jain, Rajeev},
  year={2014},
  institution={Argonne National Laboratory (ANL)}
}

@article{cai2014,
  title={Surface Mesh Generation based on Imprinting of {S-T} Edge Patches},
  author={Cai, Shengyong and Tautges, Timothy J},
  journal={Procedia Engineering},
  volume={82},
  pages={325--337},
  year={2014},
  publisher={Elsevier}
}

@inproceedings{wong2014,
  title={{Distributive Interoperable Executive Library (DIEL)} for Systems of Multiphysics Simulation},
  author={Wong, Kwai and Brown, Logan and Coan, Jason and White, David},
  booktitle={Parallel and Distributed Computing, Applications and Technologies (PDCAT), 2014 15th International Conference on},
  pages={49--55},
  year={2014},
  organization={IEEE}
}

@article{ray2014,
  title={Surface remeshing with robust high-order reconstruction},
  author={Ray, Navamita and Delaney, Tristan and Einstein, Daniel R and Jiao, Xiangmin},
  journal={Engineering with Computers},
  volume={30},
  number={4},
  pages={487--502},
  year={2014},
  publisher={Springer}
}

@article{seol2014,
  title={{PUMI:} Parallel Unstructured Mesh Infrastructure},
  author={Seol, E Seegyoung and Ibanez, Daniel A and Smith, Cameron W and Shephard, Mark S},
  journal={ACM Transactions on Mathematical Software, submitted},
  year={2014}
}

= 2013

@article{jacob2013,
  title={{ParNCL} and {ParGAL}: Data-parallel tools for postprocessing of large-scale Earth science data},
  author={Jacob, Robert and Krishna, Jayesh and Xu, Xiabing and Tautges, Tim and Grindeanu, Iulian and Latham, Rob and Peterson, Kara and Bochev, Pavel and Haley, Mary and Brown, David and others},
  journal={Procedia Computer Science},
  volume={18},
  pages={1245--1254},
  year={2013},
  publisher={Elsevier}
}

@article{han2013,
  title={{DagSolid}: a new Geant4 solid class for fast simulation in polygon-mesh geometry},
  author={Han, Min Cheol and Kim, Chan Hyeong and Jeong, Jong Hwi and Yeom, Yeon Soo and Kim, SungHoon and Wilson, Paul PH and Apostolakis, John},
  journal={Physics in medicine and biology},
  volume={58},
  number={13},
  pages={4595},
  year={2013},
  publisher={IOP Publishing}
}

@article{keyes2013,
  title={Multiphysics simulations Challenges and opportunities},
  author={Keyes, David E and McInnes, Lois C and Woodward, Carol and Gropp, William and Myra, Eric and Pernice, Michael and Bell, John and Brown, Jed and Clo, Alain and Connors, Jeffrey and others},
  journal={International Journal of High Performance Computing Applications},
  volume={27},
  number={1},
  pages={4--83},
  year={2013},
  publisher={SAGE Publications}
}

@article{mubarak2013,
  title={A parallel ghosting algorithm for the flexible distributed mesh database},
  author={Mubarak, Misbah and Seol, Seegyoung and Lu, Qiukai and Shephard, Mark S},
  journal={Scientific Programming},
  volume={21},
  number={1-2},
  pages={17--42},
  year={2013},
  publisher={IOS Press}
}

@incollection{kremer2013,
  title={{OpenVolumeMesh}--A versatile index-based data structure for {3D} polytopal complexes},
  author={Kremer, Michael and Bommes, David and Kobbelt, Leif},
  booktitle={Proceedings of the 21st International Meshing Roundtable},
  pages={531--548},
  year={2013},
  publisher={Springer}
}

@techreport{tautges2013,
  title={{SHARP} Assembly-Scale Multiphysics Demonstration Simulations.},
  author={Tautges, TJ and Fischer, P and Grindeanu, I and Jain, R and Mahadevan, V and Obabko, A and Smith, MA and Merzari, E and Ferencz, RM and others},
  year={2013},
  institution={Argonne National Laboratory (ANL)}
}

@inproceedings{woodring2013,
  title={On-demand unstructured mesh translation for reducing memory pressure during in situ analysis},
  author={Woodring, Jonathan and Ahrens, James and Tautges, Timothy J and Peterka, Tom and Vishwanath, Venkatram and Geveci, Berk},
  booktitle={Proceedings of the 8th International Workshop on Ultrascale Visualization},
  pages={3},
  year={2013},
  organization={ACM}
}

= 2012

@article{mahadevan2012,
  title={A verification exercise in multiphysics simulations for coupled reactor physics calculations},
  author={Mahadevan, Vijay S and Ragusa, Jean C and Mousseau, Vincent A},
  journal={Progress in Nuclear Energy},
  volume={55},
  pages={12--32},
  year={2012},
  publisher={Elsevier}
}

@article{yan2012,
  title={Coupling a basin modeling and a seismic code using MOAB},
  author={Yan, Mi and Jordan, Kirk and Kaushik, Dinesh and Perrone, Michael and Sachdeva, Vipin and Tautges, Timothy J and Magerlein, John},
  journal={Procedia Computer Science},
  volume={9},
  pages={986--993},
  year={2012},
  publisher={Elsevier}
}

@article{jain2012,
  title={{RGG}: Reactor geometry (and mesh) generator},
  author={Jain, Rajeev and Tautges, Tim},
  journal={Proceedings of ICAPP’12},
  pages={24--28},
  year={2012}
}

@inproceedings{seol2012,
  title={A parallel unstructured mesh infrastructure},
  author={Seol, Seegyoung and Smith, Cameron W and Ibanez, Daniel A and Shephard, Mark S},
  booktitle={2012 SC Companion: High Performance Computing, Networking Storage and Analysis},
  pages={1124--1132},
  year={2012},
  organization={IEEE}
}

@article{mohanty2012,
  title={Coupled Field Structural Analysis of {HTGR} Fuel Brick Using {Abaqus}},
  author={Mohanty, Subhasish and Jain, Rajeev and Majumdar, Saurin and Tautges, Timothy J and Srinivasan, Maukateswara},
  journal={Proceedings of ICAPP, Chicago, USA},
  year={2012}
}

@phdthesis{xie2012,
  title={Mesh Data Management Components for Petascale Adaptive Unstructured Mesh Based Simulations},
  author={Xie, Ting},
  year={2012},
  school={Rensselaer Polytechnic Institute}
}

@article{bohm2012,
  title={Detailed nuclear analysis of {ITER ELM} coils},
  author={Bohm, Tim D and Sawan, Mohamed E and Jackson, Steve T and Wilson, Paul PH},
  journal={Fusion Engineering and Design},
  volume={87},
  number={5},
  pages={657--661},
  year={2012},
  publisher={Elsevier}
}

@article{tautges2012,
  title={Creating geometry and mesh models for nuclear reactor core geometries using a lattice hierarchy-based approach},
  author={Tautges, Timothy J and Jain, Rajeev},
  journal={Engineering with Computers},
  volume={28},
  number={4},
  pages={319--329},
  year={2012},
  publisher={Springer}
}

@techreport{ferencz2012,
  title={Adding a {MOAB} Geometry Interface to {SHARP} Structural Mechanics},
  author={Ferencz, RM and Hodge, NE},
  year={2012},
  institution={Lawrence Livermore National Laboratory (LLNL), Livermore, CA}
}

@techreport{bingham2012,
  title={{SHARP/PRONGHORN}},
  author={Bingham, Avery and Ortensi, Javier and Jain, Rajeev and Grindeanu, Iulian and Tautges, Tim},
  year={2012},
  institution={Idaho National Laboratory (INL), Idaho Falls, ID}
}

@techreport{garimella2012,
  title={Unstructured Mesh Infrastructure for Simulations of the Terrestrial Arctic},
  author={Garimella, Rao and Moulton, J David and Painter, Scott},
  year={2012},
  institution={Los Alamos National Laboratory (LANL)}
}

= 2011

@phdthesis{kallen2011,
  title={Computational methods for ice flow simulation},
  author={Kallen-Brown, Jedediah Aspen},
  year={2011},
  school={Diss., Eidgen{\"o}ssische Technische Hochschule ETH Z{\"u}rich, Nr. 19948, 2011}
}

@article{bohm2011,
  title={Benchmarking a {CAD}-Based {Monte Carlo} Code Using {F}usion-Specific Experiments},
  author={Bohm, Tim D and Jackson, ST and Sawan, ME and Wilson, PPH},
  journal={Nuclear Technology},
  volume={175},
  number={1},
  pages={264--270},
  year={2011},
  publisher={American Nuclear Society}
}

@inproceedings{tautges2011,
  title={Coupled multi-physics simulation frameworks for reactor simulation: a bottom-up approach},
  author={Tautges, Timothy J and Kim, H and Caceres, Alvaro and Jain, Rajeev},
  booktitle={Int. Conf. on Mathematics and Computational Methods Applied to Nuclear Science and Engineering (M\&C 2011), Rio de Janiero, Brazil, 8--12 May 2011},
  year={2011}
}

@article{garimella2011,
  title={A Practical Guide to Developing and Using Mesh and Geometry Frameworks for Advanced Meshing and Computational Software},
  author={Garimella, Rao},
  journal={Los Almos, NM},
  year={2011}
}

@article{putanowicz2011,
  title={Grounds for the selection of software components for building FEM simulation systems for coupled problems},
  author={Putanowicz, Roman},
  journal={Mechanics and Control},
  volume={30},
  pages={234--244},
  year={2011}
}

= 2010

@inproceedings{adhianto2010,
  title={Effectively presenting call path profiles of application performance},
  author={Adhianto, Laksono and Mellor-Crummey, John and Tallent, Nathan R},
  booktitle={Parallel Processing Workshops (ICPPW), 2010 39th International Conference on},
  pages={179--188},
  year={2010},
  organization={IEEE}
}

@incollection{kim2010,
  title={{EBMesh}: An Embedded Boundary Meshing Tool},
  author={Kim, Hong-Jun and Tautges, Timothy J},
  booktitle={Proceedings of the 19th International Meshing Roundtable},
  pages={227--242},
  year={2010},
  publisher={Springer}
}

@article{wilson2010,
  title={Acceleration techniques for the direct use of {CAD}-based geometry in fusion neutronics analysis},
  author={Wilson, Paul PH and Tautges, Timothy J and Kraftcheck, Jason A and Smith, Brandon M and Henderson, Douglass L},
  journal={Fusion Engineering and Design},
  volume={85},
  number={10},
  pages={1759--1765},
  year={2010},
  publisher={Elsevier}
}

@article{brown2010,
  title={Efficient nonlinear solvers for nodal high-order finite elements in {3D}},
  author={Brown, Jed},
  journal={Journal of Scientific Computing},
  volume={45},
  number={1-3},
  pages={48--63},
  year={2010},
  publisher={Springer}
}

@article{ying2010,
  title={Progress on an integrated multi-physics simulation predictive capability for plasma chamber nuclear components},
  author={Ying, A and Abdou, M and Zhang, H and Munipalli, R and Ulrickson, M and Sawan, M and Merrill, B},
  journal={Fusion Engineering and Design},
  volume={85},
  number={7},
  pages={1681--1688},
  year={2010},
  publisher={Elsevier}
}

= 2009


@inproceedings{sawan2009,
  title={Application of {CAD}-neutronics coupling to geometrically complex fusion systems},
  author={Sawan, ME and Wilson, PPH and Tautges, T and El-Guebaly, LA and Henderson, DL and Bohm, TD and Marriott, EP and Kiedrowski, B and Smith, B and Ibrahim, A and others},
  booktitle={Fusion Engineering, 2009. SOFE 2009. 23rd IEEE/NPSS Symposium on},
  pages={1--6},
  year={2009},
  organization={IEEE}
}

@article{knepley2009,
  title={Mesh algorithms for {PDE} with Sieve I: {Mesh} distribution},
  author={Knepley, Matthew G and Karpeev, Dmitry A},
  journal={Scientific Programming},
  volume={17},
  number={3},
  pages={215--230},
  year={2009},
  publisher={Hindawi Publishing Corporation}
}

@inproceedings{devine2009,
  title={Interoperable mesh components for large-scale, distributed-memory simulations},
  author={Devine, K and Diachin, L and Kraftcheck, J and Jansen, KE and Leung, V and Luo, X and Miller, M and Ollivier-Gooch, C and Ovcharenko, A and Sahni, O and others},
  booktitle={Journal of Physics: Conference Series},
  volume={180},
  pages={012011},
  year={2009},
  organization={IOP Publishing}
}

= 2007

@article{zeng2007,
  title={{GeoTran-HC}: Geometric transformation of highly coupled variable topology multi-body problems},
  author={Zeng, Sai and Xiao, Angran and Peak, Russell S},
  journal={Computer-Aided Design},
  volume={39},
  number={9},
  pages={756--771},
  year={2007},
  publisher={Elsevier}
}

@inproceedings{ollivier2007,
  title={A Language-Independent API for Unstructured Mesh Access and Manipulation.},
  author={Ollivier-Gooch, Carl and Diachin, Lori Freitag and Shephard, Mark S and Tautges, Timothy},
  booktitle={HPCS},
  pages={22},
  year={2007}
}

= 2006

@article{morley2006,
  title={Overview of fusion nuclear technology in the US},
  author={Morley, Neil B and Abdou, Mohamed A and Anderson, Mark and Calderoni, P and Kurtz, Richard J and Nygren, R and Raffray, R and Sawan, M and Sharpe, P and Smolentsev, S and others},
  journal={Fusion engineering and design},
  volume={81},
  number={1},
  pages={33--43},
  year={2006},
  publisher={Elsevier}
}

@book{wang2006,
  title={{CAD} Based Monte Carlo Method: Algorithms for Geometric Evaluation in Support of Monte Carlo Raditation Transport Calculation},
  author={Wang, Mengkuo},
  year={2006},
  publisher={University of Wisconsin-Madison}
}

= 2005

@article{wang2005,
  title={Three-dimensional modeling of complex fusion devices using {CAD-MCNPX} interface},
  author={Wang, Mengkuo and Tautges, Timothy J and Henderson, Douglass L and El-Guebaly, Laila and Wang, Xueren},
  journal={Fusion science and technology},
  volume={47},
  number={4},
  pages={1079--1083},
  year={2005},
  publisher={American Nuclear Society}
}

@inproceedings{tautges2005,
  title={Interoperable geometry and mesh components for {SciDAC} applications},
  author={Tautges, TJ and Knupp, P and Kraftcheck, JA and Kim, HJ},
  booktitle={Journal of Physics: Conference Series},
  volume={16},
  pages={486},
  year={2005},
  organization={IOP Publishing}
}

@book{kim2005,
  title={Solid model based parallel unstructured mesh generation},
  author={Kim, Hong-Jun},
  year={2005},
  publisher={University of Wisconsin at Madison}
}

@article{celes2005,
  title={Efficient handling of implicit entities in reduced mesh representations},
  author={Celes, Waldemar and Paulino, Glaucio H and Espinha, Rodrigo},
  journal={Journal of Computing and Information Science in Engineering},
  volume={5},
  number={4},
  pages={348--359},
  year={2005},
  publisher={American Society of Mechanical Engineers}
}

= 2004

@article{tautges2004a,
  title={{MOAB-SD}: Integrated structured and unstructured mesh representation},
  author={Tautges, Timothy J},
  journal={Engineering with Computers},
  volume={20},
  number={3},
  pages={286--293},
  year={2004},
  publisher={Springer}
}

@techreport{tautges2004b,
  title={{CAD}-based Monte Carlo transport using {MCNPX} and {CGM}.},
  author={Tautges, Timothy James and Wang, Meng-Kuo and Henderson, Douglass L},
  year={2004},
  institution={Sandia National Laboratories}
}

= 2001

@article{tautges2001,
  title={{CGM}: A geometry interface for mesh generation, analysis and other applications},
  author={Tautges, Timothy J},
  journal={Engineering with Computers},
  volume={17},
  number={3},
  pages={299--314},
  year={2001},
  publisher={Springer}
}