Cppcheck report - MOAB: test/io/gmsh_test.cpp

#include "TestUtil.hpp"
#include "moab/Core.hpp"
#include "moab/Range.hpp"
#include "MBTagConventions.hpp"
#include <cmath>
#include <algorithm>

using namespace moab;

/* Input test file: gmsh2.msh
 *
 * Example version 2.0 ASCII input file from Gmsh 2.4 manual.
 */
#ifdef MESHDIR
static const char example[]  = STRINGIFY( MESHDIR ) "/io/gmsh2.msh";<--- Skipping configuration 'MESHDIR' since the value of 'MESHDIR' is unknown. Use -D if you want to check it. You can use -U to skip it explicitly.
static const char example2[] = STRINGIFY( MESHDIR ) "/io/airfoil_exterior.msh";<--- Skipping configuration 'MESHDIR' since the value of 'MESHDIR' is unknown. Use -D if you want to check it. You can use -U to skip it explicitly.
static const char example3[] = STRINGIFY( MESHDIR ) "/io/t1.msh";<--- Skipping configuration 'MESHDIR' since the value of 'MESHDIR' is unknown. Use -D if you want to check it. You can use -U to skip it explicitly.
static const char example4[] = STRINGIFY( MESHDIR ) "/io/ghosts.msh";<--- Skipping configuration 'MESHDIR' since the value of 'MESHDIR' is unknown. Use -D if you want to check it. You can use -U to skip it explicitly.
static const char example5[] = STRINGIFY( MESHDIR ) "/io/gmsh3.msh";<--- Skipping configuration 'MESHDIR' since the value of 'MESHDIR' is unknown. Use -D if you want to check it. You can use -U to skip it explicitly.
#else
static const char example[]  = "gmsh2.msh";
static const char example2[] = "airfoil_exterior.msh";
static const char example3[] = "t1.msh";
static const char example4[] = "ghosts.msh";
static const char example5[] = "gmsh3.msh";
#endif

void test_read_nodes();
void test_read_quads();
void test_read_material_set();
void test_read_material_on_nodes();
void test_read_geom_set();
void test_read_airfoil();
void test_read_t1();
void test_read_fgh();  // file with ghosts id for partition

void read_file( Interface& moab, const char* input_file );

int main()
{
    int result = 0;

    result += RUN_TEST( test_read_nodes );
    result += RUN_TEST( test_read_quads );
    result += RUN_TEST( test_read_material_set );
    result += RUN_TEST( test_read_material_on_nodes );
    result += RUN_TEST( test_read_geom_set );

    result += RUN_TEST( test_read_airfoil );
    result += RUN_TEST( test_read_t1 );
    result += RUN_TEST( test_read_fgh );
    return result;
}

void read_file( Interface& moab, const char* input_file )
{
    ErrorCode rval;
    rval = moab.load_file( input_file );CHECK_ERR( rval );
}

void test_read_nodes()
{
    const double eps = 1e-100;
    ErrorCode rval;
    Core moab;
    Interface& mb = moab;
    read_file( moab, example );

    std::vector< EntityHandle > nodes;
    rval = mb.get_entities_by_type( 0, MBVERTEX, nodes );CHECK_ERR( rval );
    CHECK_EQUAL( (size_t)6, nodes.size() );

    Tag id_tag = mb.globalId_tag();

    std::vector< int > ids( nodes.size() );
    rval = mb.tag_get_data( id_tag, &nodes[0], nodes.size(), &ids[0] );CHECK_ERR( rval );

    std::vector< int > sorted_ids( ids );
    std::sort( sorted_ids.begin(), sorted_ids.end() );

    std::vector< double > coords( 3 * nodes.size() );
    rval = mb.get_coords( &nodes[0], nodes.size(), &coords[0] );CHECK_ERR( rval );

    int idx, pos = 0;
    CHECK_EQUAL( pos + 1, sorted_ids[pos] );
    idx = std::find( ids.begin(), ids.end(), pos + 1 ) - ids.begin();
    CHECK_REAL_EQUAL( coords[3 * idx + 0], 0.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 1], 0.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 2], 0.0, eps );

    ++pos;
    CHECK_EQUAL( pos + 1, sorted_ids[pos] );
    idx = std::find( ids.begin(), ids.end(), pos + 1 ) - ids.begin();
    CHECK_REAL_EQUAL( coords[3 * idx + 0], 1.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 1], 0.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 2], 0.0, eps );

    ++pos;
    CHECK_EQUAL( pos + 1, sorted_ids[pos] );
    idx = std::find( ids.begin(), ids.end(), pos + 1 ) - ids.begin();
    CHECK_REAL_EQUAL( coords[3 * idx + 0], 1.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 1], 1.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 2], 0.0, eps );

    ++pos;
    CHECK_EQUAL( pos + 1, sorted_ids[pos] );
    idx = std::find( ids.begin(), ids.end(), pos + 1 ) - ids.begin();
    CHECK_REAL_EQUAL( coords[3 * idx + 0], 0.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 1], 1.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 2], 0.0, eps );

    ++pos;
    CHECK_EQUAL( pos + 1, sorted_ids[pos] );
    idx = std::find( ids.begin(), ids.end(), pos + 1 ) - ids.begin();
    CHECK_REAL_EQUAL( coords[3 * idx + 0], 2.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 1], 0.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 2], 0.0, eps );

    ++pos;
    CHECK_EQUAL( pos + 1, sorted_ids[pos] );
    idx = std::find( ids.begin(), ids.end(), pos + 1 ) - ids.begin();
    CHECK_REAL_EQUAL( coords[3 * idx + 0], 2.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 1], 1.0, eps );
    CHECK_REAL_EQUAL( coords[3 * idx + 2], 0.0, eps );
}

void test_read_quads()
{
    ErrorCode rval;
    Core moab;
    Interface& mb = moab;
    read_file( moab, example );

    std::vector< EntityHandle > quads;
    rval = mb.get_entities_by_type( 0, MBQUAD, quads );CHECK_ERR( rval );
    CHECK_EQUAL( (size_t)2, quads.size() );

    Tag id_tag = mb.globalId_tag();

    std::vector< int > ids( quads.size() );
    rval = mb.tag_get_data( id_tag, &quads[0], quads.size(), &ids[0] );CHECK_ERR( rval );

    if( ids[0] != 1 )
    {
        std::swap( ids[0], ids[1] );
        std::swap( quads[0], quads[1] );
    }

    int vtx_ids[4];
    const EntityHandle* conn;
    int len;

    const int conn1[] = { 1, 2, 3, 4 };
    int pos           = 0;
    CHECK_EQUAL( pos + 1, ids[pos] );
    rval = mb.get_connectivity( quads[pos], conn, len );CHECK_ERR( rval );
    CHECK_EQUAL( 4, len );
    rval = mb.tag_get_data( id_tag, conn, len, vtx_ids );CHECK_ERR( rval );
    CHECK_ARRAYS_EQUAL( conn1, 4, vtx_ids, len );

    const int conn2[] = { 2, 5, 6, 3 };
    ++pos;
    CHECK_EQUAL( pos + 1, ids[pos] );
    rval = mb.get_connectivity( quads[pos], conn, len );CHECK_ERR( rval );
    CHECK_EQUAL( 4, len );
    rval = mb.tag_get_data( id_tag, conn, len, vtx_ids );CHECK_ERR( rval );
    CHECK_ARRAYS_EQUAL( conn2, 4, vtx_ids, len );
}

void test_read_material_set()
{
    ErrorCode rval;
    Core moab;
    Interface& mb = moab;
    read_file( moab, example );

    Tag mat_tag;
    rval = mb.tag_get_handle( MATERIAL_SET_TAG_NAME, 1, MB_TYPE_INTEGER, mat_tag );CHECK_ERR( rval );

    Range sets;
    rval = mb.get_entities_by_type_and_tag( 0, MBENTITYSET, &mat_tag, 0, 1, sets );CHECK_ERR( rval );
    CHECK_EQUAL( 1, (int)sets.size() );
    EntityHandle set = sets.front();

    int id;
    rval = mb.tag_get_data( mat_tag, &set, 1, &id );CHECK_ERR( rval );
    CHECK_EQUAL( 99, id );

    std::vector< EntityHandle > quads, contents;
    rval = mb.get_entities_by_type( 0, MBQUAD, quads );CHECK_ERR( rval );
    rval = mb.get_entities_by_handle( set, contents );CHECK_ERR( rval );
    std::sort( quads.begin(), quads.end() );
    std::sort( contents.begin(), contents.end() );
    CHECK_EQUAL( quads, contents );
}

void test_read_material_on_nodes()
{
    ErrorCode rval;
    Core moab;
    Interface& mb = moab;
    read_file( moab, example5 );

    Tag mat_tag;
    rval = mb.tag_get_handle( MATERIAL_SET_TAG_NAME, 1, MB_TYPE_INTEGER, mat_tag );CHECK_ERR( rval );

    Range sets;
    rval = mb.get_entities_by_type_and_tag( 0, MBENTITYSET, &mat_tag, 0, 1, sets );CHECK_ERR( rval );
    CHECK_EQUAL( 2, (int)sets.size() );

    EntityHandle set_101 = sets.front();
    EntityHandle set_102 = sets.back();

    int id;
    rval = mb.tag_get_data( mat_tag, &set_101, 1, &id );CHECK_ERR( rval );
    CHECK_EQUAL( 101, id );

    rval = mb.tag_get_data( mat_tag, &set_102, 1, &id );CHECK_ERR( rval );
    CHECK_EQUAL( 102, id );
}

void test_read_geom_set()
{
    ErrorCode rval;
    Core moab;
    Interface& mb = moab;
    read_file( moab, example );

    Tag dim_tag, id_tag;
    rval = mb.tag_get_handle( GEOM_DIMENSION_TAG_NAME, 1, MB_TYPE_INTEGER, dim_tag );CHECK_ERR( rval );
    id_tag = mb.globalId_tag();

    Range sets;
    rval = mb.get_entities_by_type_and_tag( 0, MBENTITYSET, &dim_tag, 0, 1, sets );CHECK_ERR( rval );
    CHECK_EQUAL( 1, (int)sets.size() );
    EntityHandle set = sets.front();

    int dim;
    rval = mb.tag_get_data( dim_tag, &set, 1, &dim );CHECK_ERR( rval );
    CHECK_EQUAL( 2, dim );

    int id;
    rval = mb.tag_get_data( id_tag, &set, 1, &id );CHECK_ERR( rval );
    CHECK_EQUAL( 3, id );

    std::vector< EntityHandle > quads, contents;
    rval = mb.get_entities_by_type( 0, MBQUAD, quads );CHECK_ERR( rval );
    rval = mb.get_entities_by_handle( set, contents );CHECK_ERR( rval );
    std::sort( quads.begin(), quads.end() );
    std::sort( contents.begin(), contents.end() );
    CHECK_EQUAL( quads, contents );
}

void test_read_airfoil()
{
    Core moab;
    read_file( moab, example2 );
}

void test_read_t1()
{
    Core moab;
    read_file( moab, example3 );
}

void test_read_fgh()
{
    Core moab;
    read_file( moab, example4 );  // it should find 3 partitions
    // read partition sets
    Tag ptag;
    ErrorCode rval = moab.tag_get_handle( "PARALLEL_PARTITION", ptag );CHECK_ERR( rval );
    Range psets;
    rval = moab.get_entities_by_type_and_tag( 0, MBENTITYSET, &ptag, 0, 1, psets );CHECK_ERR( rval );
    CHECK_EQUAL( 3, (int)psets.size() );
    Range ents_first_set;
    rval = moab.get_entities_by_handle( psets[0], ents_first_set );CHECK_ERR( rval );
    CHECK_EQUAL( (int)ents_first_set.size(), 98 );
}