WriteNCDF.hpp

Go to the documentation of this file.

/**
 * MOAB, a Mesh-Oriented datABase, is a software component for creating,
 * storing and accessing finite element mesh data.
 *
 * Copyright 2004 Sandia Corporation.  Under the terms of Contract
 * DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government
 * retains certain rights in this software.
 *
 * This library is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2.1 of the License, or (at your option) any later version.
 *
 */

//-------------------------------------------------------------------------
// Filename      : WriteNCDF.hpp
//
// Purpose       : ExodusII writer
//
// Special Notes : Lots of code taken from verde implementation
//
// Creator       : Corey Ernst
//
// Date          : 8/02
//
// Owner         : Corey Ernst
//-------------------------------------------------------------------------

#ifndef WRITENCDF_HPP
#define WRITENCDF_HPP

#ifndef IS_BUILDING_MB
#error "WriteNCDF.hpp isn't supposed to be included into an application"
#endif

#include <vector>
#include <string>

#include "moab/Forward.hpp"
#include "moab/Range.hpp"
#include "moab/ExoIIInterface.hpp"
#include "moab/WriterIface.hpp"

namespace moab
{

class WriteUtilIface;

//! struct used to hold data for each block to be output in Exodus; used by
//! initialize_exodus_file to initialize the file header for increased speed
struct MaterialSetData
{
    int id;
    int number_elements;
    int number_nodes_per_element;
    int number_attributes;
    ExoIIElementType element_type;
    Range elements;
};

//! struct used to hold data for each nodeset to be output in Exodus; used by
//! initialize_exodus_file to initialize the file header for increased speed
struct DirichletSetData
{
    int id;
    int number_nodes;
    std::vector< EntityHandle > nodes;
    std::vector< double > node_dist_factors;
};

//! struct used to hold data for each sideset to be output in Exodus; used by
//! initialize_exodus_file to initialize the file header for increased speed
struct NeumannSetData
{
    int id;
    int number_elements;
    std::vector< EntityHandle > elements;
    std::vector< int > side_numbers;
    EntityHandle mesh_set_handle;
    std::vector< double > ss_dist_factors;
};

//! Output Exodus File for VERDE
class WriteNCDF : public WriterIface
{

  public:
    static WriterIface* factory( Interface* );

    //! Constructor
    WriteNCDF( Interface* impl );

    //! Destructor
    virtual ~WriteNCDF();

    //! writes out an ExoII file
    ErrorCode write_file( const char* exodus_file_name, const bool overwrite, const FileOptions& opts,
                          const EntityHandle* output_list, const int num_sets,
                          const std::vector< std::string >& qa_records, const Tag* = NULL, int = 0,
                          int user_dimension = 3 );

  protected:
    //! number of dimensions in this exo file
    // int number_dimensions();

    //! open an ExoII file for writing
    ErrorCode open_file( const char* file_name );

    //! contains the general information about a mesh
    struct ExodusMeshInfo
    {
        unsigned int num_dim;
        unsigned int num_nodes;
        unsigned int num_elements;
        unsigned int num_elementblocks;
        unsigned int num_polyhedra_blocks;
        std::vector< std::string > qaRecords;
        Range nodes;
        Range polyhedronFaces;  // they will accumulate, like nodes
        // they will be written before any other face blocks, and before polyhedra blocks
    };

  private:
    //! interface instance
    Interface* mdbImpl;
    WriteUtilIface* mWriteIface;

    //! file name
    std::string exodusFile;
    int ncFile;

    //! Meshset Handle for the mesh that is currently being read
    EntityHandle mCurrentMeshHandle;

    //! Cached tags for reading.  Note that all these tags are defined when the
    //! core is initialized.
    Tag mMaterialSetTag;
    Tag mDirichletSetTag;
    Tag mNeumannSetTag;
    Tag mHasMidNodesTag;
    Tag mGeomDimensionTag;
    Tag mDistFactorTag;
    Tag mGlobalIdTag;
    Tag mQaRecordTag;

    Tag mEntityMark;  // used to say whether an entity will be exported

    int repeat_face_blocks;  // only to make paraview and visit happy

    ErrorCode gather_mesh_information( ExodusMeshInfo& mesh_info, std::vector< MaterialSetData >& block_info,
                                       std::vector< NeumannSetData >& sideset_info,
                                       std::vector< DirichletSetData >& nodeset_info,
                                       std::vector< EntityHandle >& blocks, std::vector< EntityHandle >& sidesets,
                                       std::vector< EntityHandle >& nodesets );

    ErrorCode write_header( ExodusMeshInfo& mesh_info, std::vector< MaterialSetData >& block_info,
                            std::vector< NeumannSetData >& sideset_info, std::vector< DirichletSetData >& nodeset_info,
                            const char* filename );

    ErrorCode initialize_exodus_file( ExodusMeshInfo& mesh_info, std::vector< MaterialSetData >& block_data,
                                      std::vector< NeumannSetData >& sideset_data,
                                      std::vector< DirichletSetData >& nodeset_data, const char* title_string,
                                      bool write_maps = true, bool write_sideset_distribution_factors = true );

    ErrorCode write_qa_string( const char* string, int record_number, int record_position );

    ErrorCode write_qa_records( std::vector< std::string >& qa_record_list );

    ErrorCode write_nodes( int num_nodes, Range& nodes, int dimension );

    ErrorCode write_poly_faces( ExodusMeshInfo& mesh_info );
    ErrorCode write_elementblocks( ExodusMeshInfo& mesh_info, std::vector< MaterialSetData >& block_data );

    ErrorCode write_exodus_integer_variable( const char* variable_name, int* variable_array, int start_position,
                                             int number_values );

    ErrorCode write_global_node_order_map( int num_nodes, Range& nodes );
    ErrorCode write_global_element_order_map( int num_elements );
    ErrorCode write_element_order_map( int num_elements );

    ErrorCode write_BCs( std::vector< NeumannSetData >& sidesets, std::vector< DirichletSetData >& nodesets );

    ErrorCode find_side_element_type( const int element_id, ExoIIElementType& type );

    /* ErrorCode assign_block_ids_to_ssets(EntityHandle ss_handle,
                                            MB_MeshSet *ss_mesh_set);
                                            */
    //! free up allocated Ranges
    void reset_block( std::vector< MaterialSetData >& block_info );

    //! recursive function; given a meshset handle, get the entities and put them
    //! on the right list, then call recursively for any contained meshsets, first
    //! checking for sense reversals
    ErrorCode get_sideset_elems( EntityHandle sideset, int current_sense, Range& forward_elems, Range& reverse_elems );

    ErrorCode get_valid_sides( Range& elems, ExodusMeshInfo& mesh_info, const int sense, NeumannSetData& sideset_data );

    //! get the time and date in strings
    static void time_and_date( char* time_string, char* date_string );
};

}  // namespace moab

#endif