MOAB: Mesh Oriented datABase  (version 5.2.1)
moab::WriteNCDF Class Reference

Output Exodus File for VERDE. More...

#include <WriteNCDF.hpp>

+ Inheritance diagram for moab::WriteNCDF:
+ Collaboration diagram for moab::WriteNCDF:

Classes

struct  ExodusMeshInfo
 contains the general information about a mesh More...

Public Member Functions

 WriteNCDF (Interface *impl)
 Constructor.
virtual ~WriteNCDF ()
 Destructor.
ErrorCode write_file (const char *exodus_file_name, const bool overwrite, const FileOptions &opts, const EntityHandle *output_list, const int num_sets, const std::vector< std::string > &qa_records, const Tag *=NULL, int=0, int user_dimension=3)
 writes out an ExoII file

Static Public Member Functions

static WriterIfacefactory (Interface *)

Protected Member Functions

ErrorCode open_file (const char *file_name)
 number of dimensions in this exo file

Private Member Functions

ErrorCode gather_mesh_information (ExodusMeshInfo &mesh_info, std::vector< MaterialSetData > &block_info, std::vector< NeumannSetData > &sideset_info, std::vector< DirichletSetData > &nodeset_info, std::vector< EntityHandle > &blocks, std::vector< EntityHandle > &sidesets, std::vector< EntityHandle > &nodesets)
ErrorCode write_header (ExodusMeshInfo &mesh_info, std::vector< MaterialSetData > &block_info, std::vector< NeumannSetData > &sideset_info, std::vector< DirichletSetData > &nodeset_info, const char *filename)
ErrorCode initialize_exodus_file (ExodusMeshInfo &mesh_info, std::vector< MaterialSetData > &block_data, std::vector< NeumannSetData > &sideset_data, std::vector< DirichletSetData > &nodeset_data, const char *title_string, bool write_maps=true, bool write_sideset_distribution_factors=true)
ErrorCode write_qa_string (const char *string, int record_number, int record_position)
ErrorCode write_qa_records (std::vector< std::string > &qa_record_list)
ErrorCode write_nodes (int num_nodes, Range &nodes, int dimension)
ErrorCode write_poly_faces (ExodusMeshInfo &mesh_info)
ErrorCode write_elementblocks (ExodusMeshInfo &mesh_info, std::vector< MaterialSetData > &block_data)
ErrorCode write_exodus_integer_variable (const char *variable_name, int *variable_array, int start_position, int number_values)
ErrorCode write_global_node_order_map (int num_nodes, Range &nodes)
ErrorCode write_global_element_order_map (int num_elements)
ErrorCode write_element_order_map (int num_elements)
ErrorCode write_BCs (std::vector< NeumannSetData > &sidesets, std::vector< DirichletSetData > &nodesets)
ErrorCode find_side_element_type (const int element_id, ExoIIElementType &type)
void reset_block (std::vector< MaterialSetData > &block_info)
 free up allocated Ranges
ErrorCode get_sideset_elems (EntityHandle sideset, int current_sense, Range &forward_elems, Range &reverse_elems)
ErrorCode get_valid_sides (Range &elems, ExodusMeshInfo &mesh_info, const int sense, NeumannSetData &sideset_data)

Static Private Member Functions

static void time_and_date (char *time_string, char *date_string)
 get the time and date in strings

Private Attributes

Interface * mdbImpl
 interface instance
WriteUtilIfacemWriteIface
std::string exodusFile
 file name
int ncFile
EntityHandle mCurrentMeshHandle
 Meshset Handle for the mesh that is currently being read.
Tag mMaterialSetTag
Tag mDirichletSetTag
Tag mNeumannSetTag
Tag mHasMidNodesTag
Tag mGeomDimensionTag
Tag mDistFactorTag
Tag mGlobalIdTag
Tag mQaRecordTag
Tag mEntityMark
int repeat_face_blocks

Detailed Description

Output Exodus File for VERDE.

Definition at line 85 of file WriteNCDF.hpp.


Constructor & Destructor Documentation

moab::WriteNCDF::WriteNCDF ( Interface *  impl)

Constructor.

Get and cache predefined tag handles

Definition at line 97 of file WriteNCDF.cpp.

References DIRICHLET_SET_TAG_NAME, HAS_MID_NODES_TAG_NAME, MATERIAL_SET_TAG_NAME, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TAG_VARLEN, MB_TYPE_BIT, MB_TYPE_DOUBLE, MB_TYPE_INTEGER, MB_TYPE_OPAQUE, mDirichletSetTag, mDistFactorTag, mEntityMark, mGlobalIdTag, mHasMidNodesTag, mMaterialSetTag, mNeumannSetTag, mQaRecordTag, mWriteIface, and NEUMANN_SET_TAG_NAME.

Referenced by factory().

    : mdbImpl( impl ), ncFile( 0 ), mCurrentMeshHandle( 0 ), mGeomDimensionTag( 0 ), repeat_face_blocks( 0 )
{
    assert( impl != NULL );

    impl->query_interface( mWriteIface );

    // Initialize in case tag_get_handle fails below
    //! Get and cache predefined tag handles
    int negone = -1;
    impl->tag_get_handle( MATERIAL_SET_TAG_NAME, 1, MB_TYPE_INTEGER, mMaterialSetTag, MB_TAG_SPARSE | MB_TAG_CREAT,
                          &negone );

    impl->tag_get_handle( DIRICHLET_SET_TAG_NAME, 1, MB_TYPE_INTEGER, mDirichletSetTag, MB_TAG_SPARSE | MB_TAG_CREAT,
                          &negone );

    impl->tag_get_handle( NEUMANN_SET_TAG_NAME, 1, MB_TYPE_INTEGER, mNeumannSetTag, MB_TAG_SPARSE | MB_TAG_CREAT,
                          &negone );

    mGlobalIdTag = impl->globalId_tag();

    int dum_val_array[] = { -1, -1, -1, -1 };
    impl->tag_get_handle( HAS_MID_NODES_TAG_NAME, 4, MB_TYPE_INTEGER, mHasMidNodesTag, MB_TAG_SPARSE | MB_TAG_CREAT,
                          dum_val_array );

    impl->tag_get_handle( "distFactor", 0, MB_TYPE_DOUBLE, mDistFactorTag,
                          MB_TAG_SPARSE | MB_TAG_VARLEN | MB_TAG_CREAT );

    impl->tag_get_handle( "qaRecord", 0, MB_TYPE_OPAQUE, mQaRecordTag, MB_TAG_SPARSE | MB_TAG_VARLEN | MB_TAG_CREAT );

    impl->tag_get_handle( "WriteNCDF element mark", 1, MB_TYPE_BIT, mEntityMark, MB_TAG_CREAT );
}

Destructor.

Definition at line 130 of file WriteNCDF.cpp.

References mdbImpl, mEntityMark, mWriteIface, and ncFile.

{
    mdbImpl->release_interface( mWriteIface );

    mdbImpl->tag_delete( mEntityMark );

    if( 0 != ncFile ) ncFile = 0;
}

Member Function Documentation

WriterIface * moab::WriteNCDF::factory ( Interface *  iface) [static]

Definition at line 92 of file WriteNCDF.cpp.

References WriteNCDF().

Referenced by moab::ReaderWriterSet::ReaderWriterSet().

{
    return new WriteNCDF( iface );
}
ErrorCode moab::WriteNCDF::find_side_element_type ( const int  element_id,
ExoIIElementType type 
) [private]
ErrorCode moab::WriteNCDF::gather_mesh_information ( ExodusMeshInfo mesh_info,
std::vector< MaterialSetData > &  block_info,
std::vector< NeumannSetData > &  sideset_info,
std::vector< DirichletSetData > &  nodeset_info,
std::vector< EntityHandle > &  blocks,
std::vector< EntityHandle > &  sidesets,
std::vector< EntityHandle > &  nodesets 
) [private]

Definition at line 349 of file WriteNCDF.cpp.

References moab::Range::all_of_type(), moab::Range::back(), moab::Range::begin(), conn, moab::CN::Dimension(), moab::MaterialSetData::element_type, moab::MaterialSetData::elements, moab::NeumannSetData::elements, moab::Range::empty(), moab::Range::end(), moab::EXOII_MAX_ELEM_TYPE, moab::EXOII_POLYGON, moab::EXOII_POLYHEDRON, moab::Range::front(), moab::WriteUtilIface::gather_nodes_from_elements(), moab::ExoIIUtil::get_element_type_from_num_verts(), get_sideset_elems(), get_valid_sides(), moab::MaterialSetData::id, moab::DirichletSetData::id, moab::NeumannSetData::id, MB_CHK_ERR, MB_CHK_SET_ERR, MB_FAILURE, MB_SET_ERR, MB_SUCCESS, MB_TAG_CREAT, MB_TYPE_BIT, MB_TYPE_OUT_OF_RANGE, MBEDGE, MBQUAD, MBTRI, MBVERTEX, mdbImpl, mDirichletSetTag, mDistFactorTag, mEntityMark, moab::NeumannSetData::mesh_set_handle, mMaterialSetTag, mNeumannSetTag, mQaRecordTag, mWriteIface, moab::DirichletSetData::node_dist_factors, moab::DirichletSetData::nodes, moab::WriteNCDF::ExodusMeshInfo::nodes, moab::WriteNCDF::ExodusMeshInfo::num_dim, moab::WriteNCDF::ExodusMeshInfo::num_elementblocks, moab::WriteNCDF::ExodusMeshInfo::num_elements, moab::WriteNCDF::ExodusMeshInfo::num_nodes, moab::WriteNCDF::ExodusMeshInfo::num_polyhedra_blocks, moab::MaterialSetData::number_attributes, moab::MaterialSetData::number_elements, moab::NeumannSetData::number_elements, moab::DirichletSetData::number_nodes, moab::MaterialSetData::number_nodes_per_element, moab::WriteNCDF::ExodusMeshInfo::polyhedronFaces, moab::WriteNCDF::ExodusMeshInfo::qaRecords, size, moab::Range::size(), moab::Range::subset_by_dimension(), moab::subtract(), moab::TYPE_FROM_HANDLE(), and moab::ExoIIUtil::VerticesPerElement.

Referenced by write_file().

{
    ErrorCode rval;
    std::vector< EntityHandle >::iterator vector_iter, end_vector_iter;

    mesh_info.num_nodes            = 0;
    mesh_info.num_elements         = 0;
    mesh_info.num_elementblocks    = 0;
    mesh_info.num_polyhedra_blocks = 0;

    int id = 0;

    vector_iter     = blocks.begin();
    end_vector_iter = blocks.end();

    std::vector< EntityHandle > parent_meshsets;

    // Clean out the bits for the element mark
    rval = mdbImpl->tag_delete( mEntityMark );
    if( MB_SUCCESS != rval ) return rval;
    rval = mdbImpl->tag_get_handle( "WriteNCDF element mark", 1, MB_TYPE_BIT, mEntityMark, MB_TAG_CREAT );
    if( MB_SUCCESS != rval ) return rval;

    int highest_dimension_of_element_blocks = 0;

    for( vector_iter = blocks.begin(); vector_iter != blocks.end(); ++vector_iter )
    {
        MaterialSetData block_data;

        // For the purpose of qa records, get the parents of these blocks
        if( mdbImpl->get_parent_meshsets( *vector_iter, parent_meshsets ) != MB_SUCCESS ) return MB_FAILURE;

        // Get all Entity Handles in the mesh set
        Range dummy_range;
        rval = mdbImpl->get_entities_by_handle( *vector_iter, dummy_range, true );
        if( MB_SUCCESS != rval ) return rval;

        // Skip empty blocks
        if( dummy_range.empty() ) continue;

        // Get the block's id
        if( mdbImpl->tag_get_data( mMaterialSetTag, &( *vector_iter ), 1, &id ) != MB_SUCCESS )
        { MB_SET_ERR( MB_FAILURE, "Couldn't get block id from a tag for an element block" ); }

        block_data.id                = id;
        block_data.number_attributes = 0;

        // Wait a minute, we are doing some filtering here that doesn't make sense at this level CJS

        // Find the dimension of the last entity in this range
        int this_dim = CN::Dimension( TYPE_FROM_HANDLE( dummy_range.back() ) );
        if( this_dim > 3 ) { MB_SET_ERR( MB_TYPE_OUT_OF_RANGE, "Block " << id << " contains entity sets" ); }
        block_data.elements = dummy_range.subset_by_dimension( this_dim );

        // End of -- wait a minute, we are doing some filtering here that doesn't make sense at this
        // level CJS

        // Get the entity type for this block, verifying that it's the same for all elements
        EntityType entity_type = TYPE_FROM_HANDLE( block_data.elements.front() );
        if( !block_data.elements.all_of_type( entity_type ) )
        { MB_SET_ERR( MB_FAILURE, "Entities in block " << id << " not of common type" ); }

        int dimension = -1;
        if( entity_type == MBQUAD || entity_type == MBTRI )
            dimension = 2;  // Output shells by default
        else if( entity_type == MBEDGE )
            dimension = 1;
        else
            dimension = CN::Dimension( entity_type );

        if( dimension > highest_dimension_of_element_blocks ) highest_dimension_of_element_blocks = dimension;

        std::vector< EntityHandle > tmp_conn;
        rval = mdbImpl->get_connectivity( &( block_data.elements.front() ), 1, tmp_conn );
        if( MB_SUCCESS != rval ) return rval;
        block_data.element_type = ExoIIUtil::get_element_type_from_num_verts( tmp_conn.size(), entity_type, dimension );

        if( block_data.element_type == EXOII_MAX_ELEM_TYPE )
        { MB_SET_ERR( MB_FAILURE, "Element type in block " << id << " didn't get set correctly" ); }

        if( block_data.element_type == EXOII_POLYGON )
        {
            // get all poly connectivity
            int numconn = 0;
            for( Range::iterator eit = block_data.elements.begin(); eit != block_data.elements.end(); eit++ )
            {
                EntityHandle polg        = *eit;
                int nnodes               = 0;
                const EntityHandle* conn = NULL;
                rval                     = mdbImpl->get_connectivity( polg, conn, nnodes );MB_CHK_ERR( rval );
                numconn += nnodes;
            }
            block_data.number_nodes_per_element = numconn;
        }
        else
            block_data.number_nodes_per_element = ExoIIUtil::VerticesPerElement[block_data.element_type];

        // Number of nodes for this block
        block_data.number_elements = block_data.elements.size();

        // Total number of elements
        mesh_info.num_elements += block_data.number_elements;

        // Get the nodes for the elements
        rval = mWriteIface->gather_nodes_from_elements( block_data.elements, mEntityMark, mesh_info.nodes );
        if( MB_SUCCESS != rval ) return rval;

        // if polyhedra block
        if( EXOII_POLYHEDRON == block_data.element_type )
        {
            rval = mdbImpl->get_connectivity( block_data.elements, mesh_info.polyhedronFaces );MB_CHK_ERR( rval );
            mesh_info.num_polyhedra_blocks++;
        }

        if( !sidesets.empty() )
        {
            // If there are sidesets, keep track of which elements are being written out
            for( Range::iterator iter = block_data.elements.begin(); iter != block_data.elements.end(); ++iter )
            {
                unsigned char bit = 0x1;
                rval              = mdbImpl->tag_set_data( mEntityMark, &( *iter ), 1, &bit );
                if( MB_SUCCESS != rval ) return rval;
            }
        }

        block_info.push_back( block_data );

        const void* data = NULL;
        int size         = 0;
        if( MB_SUCCESS == mdbImpl->tag_get_by_ptr( mQaRecordTag, &( *vector_iter ), 1, &data, &size ) && NULL != data )
        {
            // There are qa records on this block - copy over to mesh qa records
            const char* qa_rec = static_cast< const char* >( data );
            int start          = 0;
            int count          = 0;
            for( int i = 0; i < size; i++ )
            {
                if( qa_rec[i] == '\0' )
                {
                    std::string qa_string( &qa_rec[start], i - start );
                    mesh_info.qaRecords.push_back( qa_string );
                    start = i + 1;
                    count++;
                }
            }

            // Constrained to multiples of 4 qa records
            if( count > 0 ) assert( count % 4 == 0 );
        }
    }

    mesh_info.num_elementblocks = block_info.size();

    for( std::vector< MaterialSetData >::iterator blit = block_info.begin(); blit != block_info.end(); blit++ )
    {
        MaterialSetData& block = *blit;
        if( block.element_type != EXOII_POLYHEDRON )
        { mesh_info.polyhedronFaces = subtract( mesh_info.polyhedronFaces, block.elements ); }
    }

    // If user hasn't entered dimension, we figure it out
    if( mesh_info.num_dim == 0 )
    {
        // Never want 1 or zero dimensions
        if( highest_dimension_of_element_blocks < 2 )
            mesh_info.num_dim = 3;
        else
            mesh_info.num_dim = highest_dimension_of_element_blocks;
    }

    Range::iterator range_iter, end_range_iter;
    range_iter     = mesh_info.nodes.begin();
    end_range_iter = mesh_info.nodes.end();

    mesh_info.num_nodes = mesh_info.nodes.size();

    //------nodesets--------

    vector_iter     = nodesets.begin();
    end_vector_iter = nodesets.end();

    for( ; vector_iter != end_vector_iter; ++vector_iter )
    {
        DirichletSetData nodeset_data;
        nodeset_data.id           = 0;
        nodeset_data.number_nodes = 0;

        // Get the nodeset's id
        if( mdbImpl->tag_get_data( mDirichletSetTag, &( *vector_iter ), 1, &id ) != MB_SUCCESS )
        { MB_SET_ERR( MB_FAILURE, "Couldn't get id tag for nodeset " << id ); }

        nodeset_data.id = id;

        std::vector< EntityHandle > node_vector;
        // Get the nodes of the nodeset that are in mesh_info.nodes
        if( mdbImpl->get_entities_by_handle( *vector_iter, node_vector, true ) != MB_SUCCESS )
        { MB_SET_ERR( MB_FAILURE, "Couldn't get nodes in nodeset " << id ); }

        // Get the tag for distribution factors
        const double* dist_factor_vector;
        int dist_factor_size;
        const void* ptr = 0;

        int has_dist_factors = 0;
        if( mdbImpl->tag_get_by_ptr( mDistFactorTag, &( *vector_iter ), 1, &ptr, &dist_factor_size ) == MB_SUCCESS &&
            dist_factor_size )
            has_dist_factors = 1;
        dist_factor_size /= sizeof( double );
        dist_factor_vector = reinterpret_cast< const double* >( ptr );
        std::vector< EntityHandle >::iterator iter, end_iter;
        iter     = node_vector.begin();
        end_iter = node_vector.end();

        int j                     = 0;
        unsigned char node_marked = 0;
        ErrorCode result;
        for( ; iter != end_iter; ++iter )
        {
            if( TYPE_FROM_HANDLE( *iter ) != MBVERTEX ) continue;
            result = mdbImpl->tag_get_data( mEntityMark, &( *iter ), 1, &node_marked );MB_CHK_SET_ERR( result, "Couldn't get mark data" );

            if( 0x1 == node_marked )
            {
                nodeset_data.nodes.push_back( *iter );
                if( 0 != has_dist_factors )
                    nodeset_data.node_dist_factors.push_back( dist_factor_vector[j] );
                else
                    nodeset_data.node_dist_factors.push_back( 1.0 );
            }
            j++;
        }

        nodeset_data.number_nodes = nodeset_data.nodes.size();
        nodeset_info.push_back( nodeset_data );
    }

    //------sidesets--------
    vector_iter     = sidesets.begin();
    end_vector_iter = sidesets.end();

    for( ; vector_iter != end_vector_iter; ++vector_iter )
    {
        NeumannSetData sideset_data;

        // Get the sideset's id
        if( mdbImpl->tag_get_data( mNeumannSetTag, &( *vector_iter ), 1, &id ) != MB_SUCCESS ) return MB_FAILURE;

        sideset_data.id              = id;
        sideset_data.mesh_set_handle = *vector_iter;

        // Get the sides in two lists, one forward the other reverse; starts with forward sense
        // by convention
        Range forward_elems, reverse_elems;
        if( get_sideset_elems( *vector_iter, 0, forward_elems, reverse_elems ) == MB_FAILURE ) return MB_FAILURE;

        ErrorCode result = get_valid_sides( forward_elems, mesh_info, 1, sideset_data );MB_CHK_SET_ERR( result, "Couldn't get valid sides data" );
        result = get_valid_sides( reverse_elems, mesh_info, -1, sideset_data );MB_CHK_SET_ERR( result, "Couldn't get valid sides data" );

        sideset_data.number_elements = sideset_data.elements.size();
        sideset_info.push_back( sideset_data );
    }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::get_sideset_elems ( EntityHandle  sideset,
int  current_sense,
Range forward_elems,
Range reverse_elems 
) [private]

recursive function; given a meshset handle, get the entities and put them on the right list, then call recursively for any contained meshsets, first checking for sense reversals

Definition at line 2031 of file WriteNCDF.cpp.

References moab::Range::begin(), moab::CN::Dimension(), moab::Range::end(), moab::Range::erase(), MB_FAILURE, MB_TYPE_INTEGER, MBENTITYSET, mdbImpl, and moab::TYPE_FROM_HANDLE().

Referenced by gather_mesh_information().

{
    Range ss_elems, ss_meshsets;

    // Get the sense tag; don't need to check return, might be an error if the tag
    // hasn't been created yet
    Tag sense_tag = 0;
    mdbImpl->tag_get_handle( "SENSE", 1, MB_TYPE_INTEGER, sense_tag );

    // Get the entities in this set
    ErrorCode result = mdbImpl->get_entities_by_handle( sideset, ss_elems, true );
    if( MB_FAILURE == result ) return result;

    // Now remove the meshsets into the ss_meshsets; first find the first meshset,
    Range::iterator range_iter = ss_elems.begin();
    while( TYPE_FROM_HANDLE( *range_iter ) != MBENTITYSET && range_iter != ss_elems.end() )
        ++range_iter;

    // Then, if there are some, copy them into ss_meshsets and erase from ss_elems
    if( range_iter != ss_elems.end() )
    {
        std::copy( range_iter, ss_elems.end(), range_inserter( ss_meshsets ) );
        ss_elems.erase( range_iter, ss_elems.end() );
    }

    // OK, for the elements, check the sense of this set and copy into the right range
    // (if the sense is 0, copy into both ranges)

    // Need to step forward on list until we reach the right dimension
    Range::iterator dum_it = ss_elems.end();
    --dum_it;
    int target_dim = CN::Dimension( TYPE_FROM_HANDLE( *dum_it ) );
    dum_it         = ss_elems.begin();
    while( target_dim != CN::Dimension( TYPE_FROM_HANDLE( *dum_it ) ) && dum_it != ss_elems.end() )
        ++dum_it;

    if( current_sense == 1 || current_sense == 0 ) std::copy( dum_it, ss_elems.end(), range_inserter( forward_elems ) );
    if( current_sense == -1 || current_sense == 0 )
        std::copy( dum_it, ss_elems.end(), range_inserter( reverse_elems ) );

    // Now loop over the contained meshsets, getting the sense of those and calling this
    // function recursively
    for( range_iter = ss_meshsets.begin(); range_iter != ss_meshsets.end(); ++range_iter )
    {
        // First get the sense; if it's not there, by convention it's forward
        int this_sense;
        if( 0 == sense_tag || MB_FAILURE == mdbImpl->tag_get_data( sense_tag, &( *range_iter ), 1, &this_sense ) )
            this_sense = 1;

        // Now get all the entities on this meshset, with the proper (possibly reversed) sense
        get_sideset_elems( *range_iter, this_sense * current_sense, forward_elems, reverse_elems );
    }

    return result;
}
ErrorCode moab::WriteNCDF::get_valid_sides ( Range elems,
ExodusMeshInfo mesh_info,
const int  sense,
NeumannSetData sideset_data 
) [private]

Definition at line 619 of file WriteNCDF.cpp.

References moab::Range::begin(), moab::CN::Dimension(), moab::NeumannSetData::elements, moab::Range::end(), moab::NeumannSetData::id, MB_CHK_SET_ERR, MB_SUCCESS, MBPOLYGON, mdbImpl, mDistFactorTag, mEntityMark, moab::NeumannSetData::mesh_set_handle, moab::NeumannSetData::side_numbers, moab::NeumannSetData::ss_dist_factors, moab::TYPE_FROM_HANDLE(), and moab::CN::VerticesPerEntity().

Referenced by gather_mesh_information().

{
    // This is where we see if underlying element of side set element is included in output

    // Get the sideset-based info for distribution factors
    const double* dist_factor_vector = 0;
    int dist_factor_size             = 0;

    // Initialize dist_fac_iter to get rid of compiler warning
    const double* dist_fac_iter = 0;
    const void* ptr             = 0;
    bool has_dist_factors       = false;
    if( mdbImpl->tag_get_by_ptr( mDistFactorTag, &( sideset_data.mesh_set_handle ), 1, &ptr, &dist_factor_size ) ==
            MB_SUCCESS &&
        dist_factor_size )
    {
        has_dist_factors   = true;
        dist_factor_vector = reinterpret_cast< const double* >( ptr );
        dist_fac_iter      = dist_factor_vector;
        dist_factor_size /= sizeof( double );
    }

    unsigned char element_marked = 0;
    ErrorCode result;
    for( Range::iterator iter = elems.begin(); iter != elems.end(); ++iter )
    {
        // Should insert here if "side" is a quad/tri on a quad/tri mesh
        result = mdbImpl->tag_get_data( mEntityMark, &( *iter ), 1, &element_marked );MB_CHK_SET_ERR( result, "Couldn't get mark data" );

        if( 0x1 == element_marked )
        {
            sideset_data.elements.push_back( *iter );

            // TJT TODO: the sense should really be # edges + 1or2
            sideset_data.side_numbers.push_back( ( sense == 1 ? 1 : 2 ) );
        }
        else
        {  // Then "side" is probably a quad/tri on a hex/tet mesh
            std::vector< EntityHandle > parents;
            int dimension = CN::Dimension( TYPE_FROM_HANDLE( *iter ) );

            // Get the adjacent parent element of "side"
            if( mdbImpl->get_adjacencies( &( *iter ), 1, dimension + 1, false, parents ) != MB_SUCCESS )
            {
#if 0
        // This is not treated as an error, print warning messages for
        // debugging only
        fprintf(stderr, "[Warning]: Couldn't get adjacencies for sideset.\n");
#endif
            }

            if( !parents.empty() )
            {
                // Make sure the adjacent parent element will be output
                for( unsigned int k = 0; k < parents.size(); k++ )
                {
                    result = mdbImpl->tag_get_data( mEntityMark, &( parents[k] ), 1, &element_marked );MB_CHK_SET_ERR( result, "Couldn't get mark data" );

                    int side_no, this_sense, this_offset;
                    if( 0x1 == element_marked &&
                        mdbImpl->side_number( parents[k], *iter, side_no, this_sense, this_offset ) == MB_SUCCESS &&
                        this_sense == sense )
                    {
                        sideset_data.elements.push_back( parents[k] );
                        sideset_data.side_numbers.push_back( side_no + 1 );
                        break;
                    }
                }
            }
            else
            {
#if 0
        // This is not treated as an error, print warning messages for
        // debugging only
        fprintf(stderr, "[Warning]: No parent element exists for element in sideset %i\n", sideset_data.id);
#endif
            }
        }

        if( sideset_data.elements.size() != 0 )
        {
            // Distribution factors
            int num_nodes = CN::VerticesPerEntity( TYPE_FROM_HANDLE( *iter ) );
            // put some dummy dist factors for polygons; why do we need them?
            if( TYPE_FROM_HANDLE( *iter ) == MBPOLYGON ) num_nodes = 1;  // dummy
            if( has_dist_factors )
            {
                std::copy( dist_fac_iter, dist_fac_iter + num_nodes,
                           std::back_inserter( sideset_data.ss_dist_factors ) );
                dist_fac_iter += num_nodes;
            }
            else
            {
                for( int j = 0; j < num_nodes; j++ )
                    sideset_data.ss_dist_factors.push_back( 1.0 );
            }
        }
    }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::initialize_exodus_file ( ExodusMeshInfo mesh_info,
std::vector< MaterialSetData > &  block_data,
std::vector< NeumannSetData > &  sideset_data,
std::vector< DirichletSetData > &  nodeset_data,
const char *  title_string,
bool  write_maps = true,
bool  write_sideset_distribution_factors = true 
) [private]

Definition at line 1445 of file WriteNCDF.cpp.

References moab::Range::begin(), conn, moab::MaterialSetData::element_type, moab::MaterialSetData::elements, moab::ExoIIUtil::ElementTypeNames, moab::Range::end(), moab::EXOII_POLYGON, moab::EXOII_POLYHEDRON, moab::MaterialSetData::id, moab::DirichletSetData::id, moab::NeumannSetData::id, INS_ID, length(), moab::ExoIIInterface::MAX_STR_LENGTH, MB_CHK_ERR, MB_FAILURE, MB_SET_ERR, MB_SET_ERR_CONT, MB_SUCCESS, mdbImpl, ncFile, moab::WriteNCDF::ExodusMeshInfo::num_dim, moab::WriteNCDF::ExodusMeshInfo::num_elementblocks, moab::WriteNCDF::ExodusMeshInfo::num_elements, moab::WriteNCDF::ExodusMeshInfo::num_nodes, moab::MaterialSetData::number_attributes, moab::MaterialSetData::number_elements, moab::NeumannSetData::number_elements, moab::DirichletSetData::number_nodes, moab::MaterialSetData::number_nodes_per_element, polyg, polyh, moab::WriteNCDF::ExodusMeshInfo::polyhedronFaces, moab::WriteNCDF::ExodusMeshInfo::qaRecords, repeat_face_blocks, moab::Range::size(), and moab::NeumannSetData::ss_dist_factors.

Referenced by write_header().

{
    // This routine takes the place of the exodusii routine ex_put_init,
    // and additionally pre-defines variables such as qa, element blocks,
    // sidesets and nodesets in a single pass.
    //
    // This is necessary because of the way exodusII works.  Each time the
    // netcdf routine endef is called to take the file out of define mode,
    // the entire file is copied before the new information is added.
    //
    // With very large files, this is simply not workable.  This routine takes
    // the definition portions of all applicable exodus routines and puts them
    // in a single definition, preventing repeated copying of the file.
    //
    // Most of the code is copied directly from the applicable exodus routine,
    // and thus this routine may not seem very consistent in usage or variable
    // naming, etc.

    // Perform the initializations

    int element_block_index;

    // Inquire on defined string dimension and general dimension for qa

    int dim_str, dim_four, dim_line, dim_time;
    if( nc_def_dim( ncFile, "len_string", ExoIIInterface::MAX_STR_LENGTH, &dim_str ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to get string length in file" ); }

    if( nc_def_dim( ncFile, "len_line", ExoIIInterface::MAX_STR_LENGTH, &dim_line ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to get line length in file" ); }

    if( nc_def_dim( ncFile, "four", 4, &dim_four ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to locate four in file" ); }

    if( nc_def_dim( ncFile, "time_step", 1, &dim_time ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to locate time step in file" ); }
    // some whole_time dummy :(
    int dtime;
    if( NC_NOERR != nc_def_var( ncFile, "time_whole", NC_DOUBLE, 1, &dim_time, &dtime ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define time whole array" ); }

    /* Put file into define mode */

    // It is possible that an NT filename using backslashes is in the title string
    // this can give fits to unix codes where the backslash is assumed to be an escape
    // sequence.  For the exodus file, just flip the backslash to a slash to prevent
    // this problem

    // Get a working copy of the title_string;

    char working_title[80];
    strncpy( working_title, title_string, 79 );

    int length = strlen( working_title );
    for( int pos = 0; pos < length; pos++ )
    {
        if( working_title[pos] == '\\' ) strncpy( &working_title[pos], "/", 1 );
    }

    if( NC_NOERR != nc_put_att_text( ncFile, NC_GLOBAL, "title", length, working_title ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define title attribute" ); }

    // Add other attributes while we're at it
    float dum_vers = 6.28F;
    if( NC_NOERR != nc_put_att_float( ncFile, NC_GLOBAL, "api_version", NC_FLOAT, 1, &dum_vers ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define api_version attribute" ); }
    dum_vers = 6.28F;
    if( NC_NOERR != nc_put_att_float( ncFile, NC_GLOBAL, "version", NC_FLOAT, 1, &dum_vers ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define version attribute" ); }
    int dum_siz = sizeof( double );
    if( NC_NOERR != nc_put_att_int( ncFile, NC_GLOBAL, "floating_point_word_size", NC_INT, 1, &dum_siz ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define floating pt word size attribute" ); }

    // Set up number of dimensions

    int num_el_blk, num_elem, num_nodes, num_dim, num_fa_blk, num_faces;
    if( nc_def_dim( ncFile, "num_dim", (size_t)mesh_info.num_dim, &num_dim ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of dimensions" ); }

    if( nc_def_dim( ncFile, "num_nodes", mesh_info.num_nodes, &num_nodes ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of nodes" ); }

    int num_nod_per_fa;  // it is needed for polyhedron only; need to compute it (connectivity of
                         // faces of polyhedra)
    if( mesh_info.polyhedronFaces.size() > 0 )
        if( nc_def_dim( ncFile, "num_faces", (int)mesh_info.polyhedronFaces.size(), &num_faces ) != NC_NOERR )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of nodes" ); }

    if( nc_def_dim( ncFile, "num_elem", mesh_info.num_elements, &num_elem ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of elements" ); }

    if( nc_def_dim( ncFile, "num_el_blk", mesh_info.num_elementblocks, &num_el_blk ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of element blocks" ); }

    /* ...and some variables */

    /* Element block id status array */
    int idstat = -1;
    if( NC_NOERR != nc_def_var( ncFile, "eb_status", NC_LONG, 1, &num_el_blk, &idstat ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define element block status array" ); }

    /* Element block id array */

    int idarr = -1;
    if( NC_NOERR != nc_def_var( ncFile, "eb_prop1", NC_LONG, 1, &num_el_blk, &idarr ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define element block id array" ); }

    /*   store property name as attribute of property array variable */
    if( NC_NOERR != nc_put_att_text( ncFile, idarr, "name", strlen( "ID" ), "ID" ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store element block property name ID" ); }

    // count how many are polyhedron blocks
    int num_fa_blocks = 0, num_polyh_blocks = 0;
    for( unsigned int i = 0; i < block_data.size(); i++ )
    {
        MaterialSetData& block = block_data[i];
        if( EXOII_POLYHEDRON == block.element_type )
        {
            num_fa_blocks++;
            num_polyh_blocks++;
        }
    }
    if( 0 == this->repeat_face_blocks && num_fa_blocks > 1 ) num_fa_blocks = 1;
    char wname[80];

    if( num_fa_blocks > 0 )
    {
        /* face block id status array */
        if( nc_def_dim( ncFile, "num_fa_blk", num_fa_blocks, &num_fa_blk ) != NC_NOERR )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of face blocks" ); }

        int idstatf = -1;
        if( NC_NOERR != nc_def_var( ncFile, "fa_status", NC_LONG, 1, &num_fa_blk, &idstatf ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define face block status array" ); }

        /* Element block id array */

        int idarrf = -1;
        if( NC_NOERR != nc_def_var( ncFile, "fa_prop1", NC_LONG, 1, &num_fa_blk, &idarrf ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define face block id array" ); }

        /*   store property name as attribute of property array variable */
        if( NC_NOERR != nc_put_att_text( ncFile, idarrf, "name", strlen( "ID" ), "ID" ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store face block property name ID" ); }
        // determine the number of num_nod_per_face
        /*
          num_fa_in_blk1 = 15 ;
          num_nod_per_fa1 = 58 ;

          int fbconn1(num_nod_per_fa1) ;
                  fbconn1:elem_type = "nsided" ;
          int fbepecnt1(num_fa_in_blk1) ;
                  fbepecnt1:entity_type1 = "NODE" ;
                  fbepecnt1:entity_type2 = "FACE" ;
           */

        int num_nodes_per_face = 0;

        int dims[1];  // maybe 1 is enough here
        for( Range::iterator eit = mesh_info.polyhedronFaces.begin(); eit != mesh_info.polyhedronFaces.end(); eit++ )
        {
            EntityHandle polyg       = *eit;
            int nnodes               = 0;
            const EntityHandle* conn = NULL;
            ErrorCode rval           = mdbImpl->get_connectivity( polyg, conn, nnodes );MB_CHK_ERR( rval );
            num_nodes_per_face += nnodes;
        }

        // duplicate if needed; default is not duplicate
        for( int j = 1; j <= num_fa_blocks; j++ )
        {
            INS_ID( wname, "num_nod_per_fa%d", j );
            if( nc_def_dim( ncFile, wname, (size_t)num_nodes_per_face, &num_nod_per_fa ) != NC_NOERR )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of nodes for face block " ); }
            dims[0] = num_nod_per_fa;
            INS_ID( wname, "fbconn%d", j );  // first one, or more
            int fbconn;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, dims, &fbconn ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create connectivity array for face block " << 1 ); }
            std::string element_type_string( "nsided" );
            if( NC_NOERR != nc_put_att_text( ncFile, fbconn, "elem_type", element_type_string.length(),
                                             element_type_string.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store element type nsided " ); }

            INS_ID( wname, "num_fa_in_blk%d", j );  // first one, or more
            int num_fa_in_blk;
            if( nc_def_dim( ncFile, wname, (size_t)mesh_info.polyhedronFaces.size(), &num_fa_in_blk ) != NC_NOERR )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of nodes for face block " ); }

            // fbepecnt
            INS_ID( wname, "fbepecnt%d", j );  // first one, or more
            int fbepecnt;
            dims[0] = num_fa_in_blk;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, dims, &fbepecnt ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create fbepecnt array for block " << 1 ); }
            std::string enttype1( "NODE" );
            if( NC_NOERR != nc_put_att_text( ncFile, fbepecnt, "entity_type1", enttype1.length(), enttype1.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store entity type 1  " ); }
            std::string enttype2( "FACE" );
            if( NC_NOERR != nc_put_att_text( ncFile, fbepecnt, "entity_type2", enttype2.length(), enttype2.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store entity type 2  " ); }
        }
    }

    // Define element blocks

    for( unsigned int i = 0; i < block_data.size(); i++ )
    {
        MaterialSetData& block = block_data[i];

        element_block_index = i + 1;
        int num_el_in_blk = -1, num_att_in_blk = -1;
        int blk_attrib, connect;

        /* Define number of elements in this block */

        INS_ID( wname, "num_el_in_blk%d", element_block_index );
        if( nc_def_dim( ncFile, wname, (size_t)block.number_elements, &num_el_in_blk ) != NC_NOERR )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of elements/block for block " << i + 1 ); }

        /* Define number of nodes per element for this block */
        INS_ID( wname, "num_nod_per_el%d", element_block_index );
        int num_nod_per_el = -1;
        if( EXOII_POLYHEDRON != block.element_type )
            if( nc_def_dim( ncFile, wname, (size_t)block.number_nodes_per_element, &num_nod_per_el ) != NC_NOERR )
            {
                MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of nodes/element for block " << block.id );
            }

        /* Define element attribute array for this block */
        int dims[3];
        if( block.number_attributes > 0 )
        {
            INS_ID( wname, "num_att_in_blk%d", element_block_index );
            if( nc_def_dim( ncFile, wname, (size_t)block.number_attributes, &num_att_in_blk ) != NC_NOERR )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of attributes in block " << block.id ); }

            INS_ID( wname, "attrib%d", element_block_index );
            dims[0] = num_el_in_blk;
            dims[1] = num_att_in_blk;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_DOUBLE, 2, dims, &blk_attrib ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define attributes for element block " << block.id ); }
        }

        /* Define element connectivity array for this block */

        if( EXOII_POLYGON != block.element_type && EXOII_POLYHEDRON != block.element_type )
        {
            INS_ID( wname, "connect%d", element_block_index );
            dims[0] = num_el_in_blk;
            dims[1] = num_nod_per_el;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 2, dims, &connect ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create connectivity array for block " << i + 1 ); }

            /* Store element type as attribute of connectivity variable */

            std::string element_type_string( ExoIIUtil::ElementTypeNames[block.element_type] );
            if( NC_NOERR != nc_put_att_text( ncFile, connect, "elem_type", element_type_string.length(),
                                             element_type_string.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store element type name " << (int)block.element_type ); }
        }
        else if( EXOII_POLYGON == block.element_type )
        {
            INS_ID( wname, "connect%d", element_block_index );
            // need to define num_nod_per_el as total number of nodes
            // ebepecnt1 as number of nodes per polygon
            /*
             * int connect1(num_nod_per_el1) ;
                  connect1:elem_type = "nsided" ;
               int ebepecnt1(num_el_in_blk1) ;
                  ebepecnt1:entity_type1 = "NODE" ;
                  ebepecnt1:entity_type2 = "ELEM" ;*/
            dims[0] = num_nod_per_el;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, dims, &connect ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create connectivity array for block " << i + 1 ); }
            std::string element_type_string( "nsided" );
            if( NC_NOERR != nc_put_att_text( ncFile, connect, "elem_type", element_type_string.length(),
                                             element_type_string.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store element type name " << (int)block.element_type ); }
            INS_ID( wname, "ebepecnt%d", element_block_index );
            int ebepecnt;
            dims[0] = num_el_in_blk;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, dims, &ebepecnt ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create ebepecnt array for block " << i + 1 ); }
            std::string etype1( "NODE" );
            if( NC_NOERR != nc_put_att_text( ncFile, ebepecnt, "entity_type1", etype1.length(), etype1.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store entity type1 " << (int)block.element_type ); }
            std::string etype2( "ELEM" );
            if( NC_NOERR != nc_put_att_text( ncFile, ebepecnt, "entity_type2", etype2.length(), etype2.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store entity type2 " << (int)block.element_type ); }
        }
        else if( EXOII_POLYHEDRON == block.element_type )
        {
            // INS_ID(wname, "connect%d", element_block_index);
            /*
            testn  face   example: 3 polyh, 15 total faces, 2 shared; 15+2 = 17
            num_elem = 3 ;
            num_face = 15 ; // not needed?
            num_el_blk = 1 ;

            num_el_in_blk1 = 3 ;
            num_fac_per_el1 = 17 ;

             * num faces will be total face conn
             * num_faces_in_block will be number of faces (non repeated)
             * num_nodes_per_face will have total face connectivity
             */
            int num_faces2 = 0;

            for( Range::iterator eit = block.elements.begin(); eit != block.elements.end(); eit++ )
            {
                EntityHandle polyh       = *eit;
                int nfaces               = 0;
                const EntityHandle* conn = NULL;
                ErrorCode rval           = mdbImpl->get_connectivity( polyh, conn, nfaces );MB_CHK_ERR( rval );
                num_faces2 += nfaces;
            }

            int num_fac_per_el;

            INS_ID( wname, "num_fac_per_el%d", element_block_index );
            if( nc_def_dim( ncFile, wname, (size_t)num_faces2, &num_fac_per_el ) != NC_NOERR )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of faces per block " << block.id ); }

            /*
            int facconn1(num_fac_per_el1) ;
                    facconn1:elem_type = "NFACED" ;
            int ebepecnt1(num_el_in_blk1) ;
                    ebepecnt1:entity_type1 = "FACE" ;
                    ebepecnt1:entity_type2 = "ELEM" ;
             */

            // facconn
            INS_ID( wname, "facconn%d", element_block_index );
            int facconn;
            dims[0] = num_fac_per_el;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, dims, &facconn ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create facconn array for block " << i + 1 ); }
            std::string etype( "NFACED" );
            if( NC_NOERR != nc_put_att_text( ncFile, facconn, "elem_type", etype.length(), etype.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store elem type " << (int)block.element_type ); }

            // ebepecnt
            INS_ID( wname, "ebepecnt%d", element_block_index );
            int ebepecnt;
            dims[0] = num_el_in_blk;
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, dims, &ebepecnt ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create ebepecnt array for block " << i + 1 ); }
            std::string etype1( "FACE" );
            if( NC_NOERR != nc_put_att_text( ncFile, ebepecnt, "entity_type1", etype1.length(), etype1.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store entity type1 " << (int)block.element_type ); }
            std::string etype2( "ELEM" );
            if( NC_NOERR != nc_put_att_text( ncFile, ebepecnt, "entity_type2", etype2.length(), etype2.c_str() ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store entity type2 " << (int)block.element_type ); }

            block.number_nodes_per_element = num_faces2;  // connectivity for all polyhedra in block
        }
    }

    /* Node set id array: */

    int non_empty_nss = 0;
    // Need to go through nodesets to compute # nodesets, some might be empty
    std::vector< DirichletSetData >::iterator ns_it;
    for( ns_it = nodeset_data.begin(); ns_it != nodeset_data.end(); ++ns_it )
    {
        if( 0 != ( *ns_it ).number_nodes ) non_empty_nss++;
    }

    int num_ns    = -1;
    int ns_idstat = -1, ns_idarr = -1;
    if( non_empty_nss > 0 )
    {
        if( nc_def_dim( ncFile, "num_node_sets", ( size_t )( non_empty_nss ), &num_ns ) != NC_NOERR )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of node sets" ); }

        /* Node set id status array: */

        if( NC_NOERR != nc_def_var( ncFile, "ns_status", NC_LONG, 1, &num_ns, &ns_idstat ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create node sets status array" ); }

        /* Node set id array: */
        if( NC_NOERR != nc_def_var( ncFile, "ns_prop1", NC_LONG, 1, &num_ns, &ns_idarr ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create node sets property array" ); }

        /* Store property name as attribute of property array variable */
        if( NC_NOERR != nc_put_att_text( ncFile, NC_GLOBAL, "name", strlen( "ID" ), "ID" ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store node set property name ID" ); }

        // Now, define the arrays needed for each node set

        int index = 0;

        for( unsigned i = 0; i < nodeset_data.size(); i++ )
        {
            DirichletSetData node_set = nodeset_data[i];

            if( 0 == node_set.number_nodes )
            {
                MB_SET_ERR_CONT( "WriteNCDF: empty nodeset " << node_set.id );
                continue;
            }
            index++;

            int num_nod_ns = -1;
            INS_ID( wname, "num_nod_ns%d", index );
            if( nc_def_dim( ncFile, wname, (size_t)node_set.number_nodes, &num_nod_ns ) != NC_NOERR )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of nodes for set " << node_set.id ); }

            /* Create variable array in which to store the node set node list */
            int node_ns = -1;
            INS_ID( wname, "node_ns%d", index );
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, &num_nod_ns, &node_ns ) )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create node set " << node_set.id << " node list" ); }

            // Create distribution factor array
            int fact_ns = -1;
            INS_ID( wname, "dist_fact_ns%d", index );
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_DOUBLE, 1, &num_nod_ns, &fact_ns ) )
            {
                MB_SET_ERR( MB_FAILURE,
                            "WriteNCDF: failed to create node set " << node_set.id << " distribution factor list" );
            }
        }
    }

    /* Side set id array: */

    long non_empty_ss = 0;
    // Need to go through nodesets to compute # nodesets, some might be empty
    std::vector< NeumannSetData >::iterator ss_it;
    for( ss_it = sideset_data.begin(); ss_it != sideset_data.end(); ++ss_it )
    {
        if( 0 != ( *ss_it ).number_elements ) non_empty_ss++;
    }

    if( non_empty_ss > 0 )
    {
        int num_ss = -1;
        if( nc_def_dim( ncFile, "num_side_sets", non_empty_ss, &num_ss ) != NC_NOERR )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of side sets" ); }

        /* Side set id status array: */
        int ss_idstat = -1, ss_idarr = -1;
        if( NC_NOERR != nc_def_var( ncFile, "ss_status", NC_LONG, 1, &num_ss, &ss_idstat ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define side set status" ); }

        /* Side set id array: */
        if( NC_NOERR != nc_def_var( ncFile, "ss_prop1", NC_LONG, 1, &num_ss, &ss_idarr ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define side set property" ); }

        /* Store property name as attribute of property array variable */
        if( NC_NOERR != nc_put_att_text( ncFile, ss_idarr, "name", strlen( "ID" ), "ID" ) )
        { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to store side set property name ID" ); }

        // Now, define the arrays needed for each side set

        int index = 0;
        for( unsigned int i = 0; i < sideset_data.size(); i++ )
        {
            NeumannSetData side_set = sideset_data[i];

            // Don't define an empty set
            if( 0 == side_set.number_elements ) continue;

            index++;

            int num_side_ss = -1;
            int elem_ss = -1, side_ss = -1;
            INS_ID( wname, "num_side_ss%d", index );
            if( nc_def_dim( ncFile, wname, (size_t)side_set.number_elements, &num_side_ss ) != NC_NOERR )
            { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of sides in side set " << side_set.id ); }

            INS_ID( wname, "elem_ss%d", index );
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, &num_side_ss, &elem_ss ) )
            {
                MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create element list for side set "
                                            << side_set.id ); /* Exit define mode and return */
            }
            INS_ID( wname, "side_ss%d", index );
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, &num_side_ss, &side_ss ) )
            {
                MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create side list for side set "
                                            << side_set.id ); /* Exit define mode and return */
            }

            // sideset distribution factors
            int num_df_ss = -1;
            INS_ID( wname, "num_df_ss%d", index );
            if( nc_def_dim( ncFile, wname, (size_t)side_set.ss_dist_factors.size(), &num_df_ss ) != NC_NOERR )
            {
                MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define number of dist factors in side set "
                                            << side_set.id ); /* Exit define mode and return */
            }

            /* Create variable array in which to store the side set distribution factors */

            int fact_ss = -1;
            INS_ID( wname, "dist_fact_ss%d", index );
            if( NC_NOERR != nc_def_var( ncFile, wname, NC_LONG, 1, &num_df_ss, &fact_ss ) )
            {
                MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create dist factors list for side set "
                                            << side_set.id ); /* Exit define mode and return */
            }
        }
    }

    /* Node coordinate arrays: */

    int coord, name_coord, dims[3];
    dims[0] = num_dim;
    dims[1] = num_nodes;
    if( NC_NOERR != nc_def_var( ncFile, "coord", NC_DOUBLE, 2, dims, &coord ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define node coordinate array" ); }

    /* Coordinate names array */

    dims[0] = num_dim;
    dims[1] = dim_str;
    if( NC_NOERR != nc_def_var( ncFile, "coor_names", NC_CHAR, 2, dims, &name_coord ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define coordinate name array" ); }

    // Define genesis maps if required

    if( write_maps )
    {
        // Element map
        int elem_map = -1, elem_map2 = -1, node_map = -1;
        if( NC_NOERR != nc_def_var( ncFile, "elem_map", NC_LONG, 1, &num_elem, &elem_map ) )
        {
            MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create element map array" ); /* Exit define mode and return */
        }

        // Create the element number map
        if( NC_NOERR != nc_def_var( ncFile, "elem_num_map", NC_LONG, 1, &num_elem, &elem_map2 ) )
        {
            MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create element numbering map" ); /* Exit define mode
                                                                                              and return */
        }

        // Create node number map
        if( NC_NOERR != nc_def_var( ncFile, "node_num_map", NC_LONG, 1, &num_nodes, &node_map ) )
        {
            MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to create node numbering map array" ); /* Exit define mode and
                                                                                                 return */
        }
    }

    // Define qa records to be used

    int num_qa_rec = mesh_info.qaRecords.size() / 4;
    int num_qa     = -1;

    if( nc_def_dim( ncFile, "num_qa_rec", (long)num_qa_rec, &num_qa ) != NC_NOERR )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define qa record array size" ); }

    // Define qa array
    int qa_title;
    dims[0] = num_qa;
    dims[1] = dim_four;
    dims[2] = dim_str;
    if( NC_NOERR != nc_def_var( ncFile, "qa_records", NC_CHAR, 3, dims, &qa_title ) )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to define qa record array" ); }

    // Take it out of define mode
    if( NC_NOERR != nc_enddef( ncFile ) ) { MB_SET_ERR( MB_FAILURE, "WriteNCDF: Trouble leaving define mode" ); }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::open_file ( const char *  file_name) [protected]

number of dimensions in this exo file

open an ExoII file for writing

Definition at line 2018 of file WriteNCDF.cpp.

References moab::fail(), MB_FAILURE, MB_SET_ERR, MB_SUCCESS, and ncFile.

{
    // Not a valid filename
    if( strlen( (const char*)filename ) == 0 ) { MB_SET_ERR( MB_FAILURE, "Output Exodus filename not specified" ); }

    int fail = nc_create( filename, NC_CLOBBER, &ncFile );

    // File couldn't be opened
    if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Cannot open " << filename ); }

    return MB_SUCCESS;
}
void moab::WriteNCDF::reset_block ( std::vector< MaterialSetData > &  block_info) [private]

free up allocated Ranges

Definition at line 139 of file WriteNCDF.cpp.

Referenced by write_file().

{
    std::vector< MaterialSetData >::iterator iter;

    for( iter = block_info.begin(); iter != block_info.end(); ++iter )
    {
        iter->elements.clear();
    }
}
void moab::WriteNCDF::time_and_date ( char *  time_string,
char *  date_string 
) [static, private]

get the time and date in strings

Definition at line 149 of file WriteNCDF.cpp.

References moab::TIME_STR_LEN.

Referenced by write_file(), and write_header().

{
    struct tm* local_time;
    time_t calendar_time;

    calendar_time = time( NULL );
    local_time    = localtime( &calendar_time );

    assert( NULL != time_string && NULL != date_string );

    strftime( time_string, TIME_STR_LEN, "%H:%M:%S", local_time );
    strftime( date_string, TIME_STR_LEN, "%m/%d/%Y", local_time );

    // Terminate with NULL character
    time_string[10] = (char)NULL;
    date_string[10] = (char)NULL;
}
ErrorCode moab::WriteNCDF::write_BCs ( std::vector< NeumannSetData > &  sidesets,
std::vector< DirichletSetData > &  nodesets 
) [private]

Definition at line 1269 of file WriteNCDF.cpp.

References moab::NeumannSetData::elements, moab::fail(), GET_VAR, moab::NeumannSetData::id, moab::ID_FROM_HANDLE(), INS_ID, MB_CHK_SET_ERR, MB_CHK_SET_ERR_RET_VAL, MB_FAILURE, MB_SET_ERR, MB_SUCCESS, mdbImpl, mGlobalIdTag, ncFile, moab::NeumannSetData::number_elements, moab::NeumannSetData::side_numbers, moab::NeumannSetData::ss_dist_factors, and write_exodus_integer_variable().

Referenced by write_file().

{
    unsigned int i, j;
    int id;
    int ns_index = -1;

    for( std::vector< DirichletSetData >::iterator ns_it = nodesets.begin(); ns_it != nodesets.end(); ++ns_it )
    {
        // Get number of nodes in set
        int number_nodes = ( *ns_it ).number_nodes;
        if( 0 == number_nodes ) continue;

        // If we're here, we have a non-empty nodeset; increment the index
        ns_index++;

        // Get the node set id
        id = ( *ns_it ).id;

        // Build new array to old exodus ids
        int* exodus_id_array      = new int[number_nodes];
        double* dist_factor_array = new double[number_nodes];

        std::vector< EntityHandle >::iterator begin_iter, end_iter;
        std::vector< double >::iterator other_iter;
        begin_iter = ( *ns_it ).nodes.begin();
        end_iter   = ( *ns_it ).nodes.end();
        other_iter = ( *ns_it ).node_dist_factors.begin();

        j = 0;
        int exodus_id;
        ErrorCode result;
        // Fill up node array and dist. factor array at the same time
        for( ; begin_iter != end_iter; ++begin_iter )
        {
            result = mdbImpl->tag_get_data( mGlobalIdTag, &( *begin_iter ), 1, &exodus_id );MB_CHK_SET_ERR( result, "Problem getting id tag data" );

            exodus_id_array[j]   = exodus_id;
            dist_factor_array[j] = *( other_iter );
            ++other_iter;
            j++;
        }

        // Write out the id for the nodeset

        int num_values = 1;

        result = write_exodus_integer_variable( "ns_prop1", &id, ns_index, num_values );MB_CHK_SET_ERR_RET_VAL( result, "Problem writing node set id " << id, MB_FAILURE );

        // Write out the nodeset status

        int status = 1;
        if( !number_nodes ) status = 0;

        result = write_exodus_integer_variable( "ns_status", &status, ns_index, num_values );MB_CHK_SET_ERR_RET_VAL( result, "Problem writing node set status", MB_FAILURE );

        // Write it out
        char wname[80];
        int nc_var = -1;
        std::vector< int > dims;
        INS_ID( wname, "node_ns%d", ns_index + 1 );
        GET_VAR( wname, nc_var, dims );
        if( -1 == nc_var ) { MB_SET_ERR( MB_FAILURE, "Failed to get node_ns variable" ); }

        size_t start = 0, count = number_nodes;
        int fail = nc_put_vara_int( ncFile, nc_var, &start, &count, exodus_id_array );
        if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed writing exodus id array" ); }

        // Write out nodeset distribution factors
        INS_ID( wname, "dist_fact_ns%d", ns_index + 1 );
        nc_var = -1;
        GET_VAR( wname, nc_var, dims );
        if( -1 == nc_var ) { MB_SET_ERR( MB_FAILURE, "Failed to get dist_fact variable" ); }
        fail = nc_put_vara_double( ncFile, nc_var, &start, &count, dist_factor_array );
        if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed writing dist factor array" ); }

        delete[] dist_factor_array;
        delete[] exodus_id_array;
    }

    // Now do sidesets
    int ss_index = 0;  // Index of sideset - not the same as 'i' because
                       // only writing non-empty side sets
    for( i = 0; i < sidesets.size(); i++ )
    {
        NeumannSetData sideset_data = sidesets[i];

        // Get the side set id
        int side_set_id = sideset_data.id;

        // Get number of elements in set
        int number_elements = sideset_data.number_elements;
        if( 0 == number_elements ) continue;

        // Build new array to old exodus ids
        int* output_element_ids          = new int[number_elements];
        int* output_element_side_numbers = new int[number_elements];

        std::vector< EntityHandle >::iterator begin_iter, end_iter;
        begin_iter                             = sideset_data.elements.begin();
        end_iter                               = sideset_data.elements.end();
        std::vector< int >::iterator side_iter = sideset_data.side_numbers.begin();

        // Get the tag handle
        j = 0;
        int exodus_id;

        // For each "side"
        for( ; begin_iter != end_iter; ++begin_iter, ++side_iter )
        {
            ErrorCode result = mdbImpl->tag_get_data( mGlobalIdTag, &( *begin_iter ), 1, &exodus_id );MB_CHK_SET_ERR( result, "Problem getting exodus id for sideset element "
                                        << (long unsigned int)ID_FROM_HANDLE( *begin_iter ) );

            output_element_ids[j]            = exodus_id;
            output_element_side_numbers[j++] = *side_iter;
        }

        if( 0 != number_elements )
        {
            // Write out the id for the nodeset

            int num_values = 1;

            // ss_prop1[ss_index] = side_set_id
            ErrorCode result = write_exodus_integer_variable( "ss_prop1", &side_set_id, ss_index, num_values );MB_CHK_SET_ERR_RET_VAL( result, "Problem writing node set id " << id, MB_FAILURE );

            // FIXME : Something seems wrong here.  The we are within a block
            // started with if (0 != number_elements), so this condition is always
            // false.  This code seems to indicate that we want to write all
            // sidesets, not just empty ones.  But the code both here and in
            // initialize_exodus_file() skip empty side sets.
            //  - j.k. 2007-03-09
            int status = 1;
            if( 0 == number_elements ) status = 0;

            // ss_status[ss_index] = status
            result = write_exodus_integer_variable( "ss_status", &status, ss_index, num_values );MB_CHK_SET_ERR_RET_VAL( result, "Problem writing side set status", MB_FAILURE );

            // Increment ss_index now because we want a) we need to
            // increment it somewhere within the if (0 != number_elements)
            // block and b) the above calls need a zero-based index
            // while the following use a one-based index.
            ++ss_index;

            char wname[80];
            int nc_var;
            std::vector< int > dims;
            INS_ID( wname, "elem_ss%d", ss_index );
            GET_VAR( wname, nc_var, dims );
            if( -1 == nc_var ) { MB_SET_ERR( MB_FAILURE, "Failed to get elem_ss variable" ); }
            size_t start = 0, count = number_elements;
            int fail = nc_put_vara_int( ncFile, nc_var, &start, &count, output_element_ids );
            if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed writing sideset element array" ); }

            INS_ID( wname, "side_ss%d", ss_index );
            nc_var = -1;
            GET_VAR( wname, nc_var, dims );
            if( -1 == nc_var ) { MB_SET_ERR( MB_FAILURE, "Failed to get side_ss variable" ); }
            fail = nc_put_vara_int( ncFile, nc_var, &start, &count, output_element_side_numbers );
            if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed writing sideset side array" ); }

            INS_ID( wname, "dist_fact_ss%d", ss_index );
            nc_var = -1;
            GET_VAR( wname, nc_var, dims );
            if( -1 == nc_var ) { MB_SET_ERR( MB_FAILURE, "Failed to get sideset dist factors variable" ); }
            count = sideset_data.ss_dist_factors.size();
            fail  = nc_put_vara_double( ncFile, nc_var, &start, &count, &( sideset_data.ss_dist_factors[0] ) );
            if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed writing sideset dist factors array" ); }
        }

        delete[] output_element_ids;
        delete[] output_element_side_numbers;
    }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_element_order_map ( int  num_elements) [private]

Definition at line 1208 of file WriteNCDF.cpp.

References moab::error(), MB_FAILURE, MB_SET_ERR, MB_SUCCESS, and write_exodus_integer_variable().

Referenced by write_file().

{
    // Note: this routine bypasses the standard exodusII interface for efficiency!

    // Element order map
    int* map = new int[num_elements];

    // For now, output a dummy map!

    for( int i = 0; i < num_elements; i++ )
    {
        map[i] = i + 1;
    }

    // Output array and cleanup

    int error = write_exodus_integer_variable( "elem_map", map, 0, num_elements );

    if( map ) delete[] map;

    if( error < 0 ) { MB_SET_ERR( MB_FAILURE, "Failed writing element map" ); }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_elementblocks ( ExodusMeshInfo mesh_info,
std::vector< MaterialSetData > &  block_data 
) [private]

Definition at line 969 of file WriteNCDF.cpp.

References moab::Range::all_of_type(), moab::Range::begin(), conn, moab::MaterialSetData::element_type, moab::MaterialSetData::elements, moab::Range::end(), exodus_elem_order_map, moab::EXOII_POLYGON, moab::EXOII_POLYHEDRON, moab::ExoIIUtil::ExoIIElementMBEntity, moab::fail(), moab::WriteUtilIface::get_element_connect(), GET_VAR, moab::MaterialSetData::id, moab::Range::index(), INS_ID, MB_CHK_ERR, MB_FAILURE, MB_SET_ERR, MB_SET_ERR_CONT, MB_SUCCESS, mdbImpl, mGlobalIdTag, mWriteIface, ncFile, moab::MaterialSetData::number_elements, moab::MaterialSetData::number_nodes_per_element, polyh, moab::WriteNCDF::ExodusMeshInfo::polyhedronFaces, moab::WriteUtilIface::reorder(), moab::Range::size(), and write_exodus_integer_variable().

Referenced by write_file().

{
    unsigned int i;
    int block_index = 0;  // Index into block list, may != 1 if there are inactive blocks
    int exodus_id   = 1;

    for( i = 0; i < block_data.size(); i++ )
    {
        MaterialSetData& block = block_data[i];

        unsigned int num_nodes_per_elem = block.number_nodes_per_element;

        // Write out the id for the block

        int id         = block.id;
        int num_values = 1;

        if( write_exodus_integer_variable( "eb_prop1", &id, block_index, num_values ) != MB_SUCCESS )
        { MB_SET_ERR_CONT( "Problem writing element block id " << id ); }

        // Write out the block status

        int status = 1;
        if( 0 == block.number_elements ) { MB_SET_ERR( MB_FAILURE, "No elements in block " << id ); }

        if( write_exodus_integer_variable( "eb_status", &status, block_index, num_values ) != MB_SUCCESS )
        { MB_SET_ERR( MB_FAILURE, "Problem writing element block status" ); }

        //
        // Map the connectivity to the new nodes
        const unsigned int num_elem = block.number_elements;
        unsigned int num_nodes      = num_nodes_per_elem * num_elem;
        if( EXOII_POLYGON == block.element_type || EXOII_POLYHEDRON == block.element_type )
        { num_nodes = num_nodes_per_elem; }
        int* connectivity = new int[num_nodes];

        ErrorCode result = MB_SUCCESS;
        if( block.element_type != EXOII_POLYHEDRON )
            mWriteIface->get_element_connect( num_elem, num_nodes_per_elem, mGlobalIdTag, block.elements, mGlobalIdTag,
                                              exodus_id, connectivity );
        if( result != MB_SUCCESS )
        {
            delete[] connectivity;
            MB_SET_ERR( result, "Couldn't get element array to write from" );
        }

        // If necessary, convert from EXODUS to CN node order
        const EntityType elem_type = ExoIIUtil::ExoIIElementMBEntity[block.element_type];
        assert( block.elements.all_of_type( elem_type ) );
        const int* reorder = 0;
        if( block.element_type != EXOII_POLYHEDRON && block.element_type != EXOII_POLYGON )
            reorder = exodus_elem_order_map[elem_type][block.number_nodes_per_element];
        if( reorder )
            WriteUtilIface::reorder( reorder, connectivity, block.number_elements, block.number_nodes_per_element );

        char wname[80];
        int nc_var = -1;
        std::vector< int > dims;
        if( block.element_type != EXOII_POLYHEDRON )
        {
            exodus_id += num_elem;
            INS_ID( wname, "connect%u", i + 1 );

            GET_VAR( wname, nc_var, dims );
            if( -1 == nc_var )
            {
                delete[] connectivity;
                MB_SET_ERR( MB_FAILURE, "Couldn't get connectivity variable" );
            }
        }

        if( EXOII_POLYGON == block.element_type )
        {
            size_t start[1] = { 0 }, count[1] = { num_nodes_per_elem };
            int fail = nc_put_vara_int( ncFile, nc_var, start, count, connectivity );
            if( NC_NOERR != fail )
            {
                delete[] connectivity;
                MB_SET_ERR( MB_FAILURE, "Couldn't write connectivity variable" );
            }
            // now put also number ebepecnt1
            INS_ID( wname, "ebepecnt%u", i + 1 );
            GET_VAR( wname, nc_var, dims );
            count[0] = block.number_elements;
            start[0] = 0;
            // reuse connectivity array, to not allocate another one
            int j = 0;
            for( Range::iterator eit = block.elements.begin(); eit != block.elements.end(); j++, eit++ )
            {
                EntityHandle polg        = *eit;
                int nnodes               = 0;
                const EntityHandle* conn = NULL;
                ErrorCode rval           = mdbImpl->get_connectivity( polg, conn, nnodes );MB_CHK_ERR( rval );
                connectivity[j] = nnodes;
            }
            fail = nc_put_vara_int( ncFile, nc_var, start, count, connectivity );
            if( NC_NOERR != fail )
            {
                delete[] connectivity;
                MB_SET_ERR( MB_FAILURE, "Couldn't write ebepecnt variable" );
            }
        }
        else if( block.element_type != EXOII_POLYHEDRON )
        {
            size_t start[2] = { 0, 0 }, count[2] = { num_elem, num_nodes_per_elem };
            int fail = nc_put_vara_int( ncFile, nc_var, start, count, connectivity );
            if( NC_NOERR != fail )
            {
                delete[] connectivity;
                MB_SET_ERR( MB_FAILURE, "Couldn't write connectivity variable" );
            }
        }
        else  // if (block.element_type == EXOII_POLYHEDRON)
        {
            /* write a lot of stuff // faconn
            num_fa_in_blk1 = 15 ;
            num_nod_per_fa1 = 58 ;
            num_el_in_blk1 = 3 ;
            num_fac_per_el1 = 17 ;
            int fbconn1(num_nod_per_fa1) ;
                    fbconn1:elem_type = "nsided" ;
            int fbepecnt1(num_fa_in_blk1) ;
                    fbepecnt1:entity_type1 = "NODE" ;
                    fbepecnt1:entity_type2 = "FACE" ;
            int facconn1(num_fac_per_el1) ;
                    facconn1:elem_type = "NFACED" ;
            int ebepecnt1(num_el_in_blk1) ;
                    ebepecnt1:entity_type1 = "FACE" ;
                    ebepecnt1:entity_type2 = "ELEM" ;

             */
            Range& block_faces = mesh_info.polyhedronFaces;
            // ErrorCode rval = mdbImpl->get_connectivity(block.elements, block_faces);
            // MB_CHK_ERR(rval);

            // reuse now connectivity for facconn1
            INS_ID( wname, "facconn%u", i + 1 );
            GET_VAR( wname, nc_var, dims );  // fbconn# variable, 1 dimensional

            std::vector< int > ebepe( block.elements.size() );  // ebepecnt1
            int ixcon = 0, j = 0;
            size_t start[1] = { 0 }, count[1] = { 0 };

            for( Range::iterator eit = block.elements.begin(); eit != block.elements.end(); eit++ )
            {
                EntityHandle polyh       = *eit;
                int nfaces               = 0;
                const EntityHandle* conn = NULL;
                ErrorCode rval           = mdbImpl->get_connectivity( polyh, conn, nfaces );MB_CHK_ERR( rval );
                for( int k = 0; k < nfaces; k++ )
                {
                    int index = block_faces.index( conn[k] );
                    if( index == -1 ) MB_SET_ERR( MB_FAILURE, "Couldn't find face in polyhedron" );
                    connectivity[ixcon++] = index + 1;
                }
                ebepe[j++] = nfaces;
                // num_faces+=nfaces;
            }
            count[0] = ixcon;  // facconn1
            int fail = nc_put_vara_int( ncFile, nc_var, start, count, connectivity );
            if( NC_NOERR != fail )
            {
                delete[] connectivity;
                MB_SET_ERR( MB_FAILURE, "Couldn't write fbconn variable" );
            }

            INS_ID( wname, "ebepecnt%u", i + 1 );
            GET_VAR( wname, nc_var, dims );  // ebepecnt# variable, 1 dimensional
            count[0] = block.elements.size();

            fail = nc_put_vara_int( ncFile, nc_var, start, count, &ebepe[0] );
            if( NC_NOERR != fail )
            {
                delete[] connectivity;
                MB_SET_ERR( MB_FAILURE, "Couldn't write fbepecnt variable" );
            }
        }
        block_index++;
        delete[] connectivity;
    }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_exodus_integer_variable ( const char *  variable_name,
int *  variable_array,
int  start_position,
int  number_values 
) [private]

Definition at line 1233 of file WriteNCDF.cpp.

References moab::fail(), GET_VAR, MB_FAILURE, MB_SET_ERR, MB_SUCCESS, and ncFile.

Referenced by write_BCs(), write_element_order_map(), write_elementblocks(), write_global_element_order_map(), write_global_node_order_map(), and write_poly_faces().

{
    // Note: this routine bypasses the standard exodusII interface for efficiency!

    // Write directly to netcdf interface for efficiency

    // Get the variable id of the element map
    int nc_var = -1;
    std::vector< int > dims;
    GET_VAR( variable_name, nc_var, dims );
    if( -1 == nc_var )
    { MB_SET_ERR( MB_FAILURE, "WriteNCDF: failed to locate variable " << variable_name << " in file" ); }
    // This contortion is necessary because netCDF is expecting nclongs;
    // fortunately it's necessary only when ints and nclongs aren't the same size

    size_t start[1], count[1];
    start[0] = start_position;
    count[0] = number_values;

    int fail = NC_NOERR;
    if( sizeof( int ) == sizeof( long ) ) { fail = nc_put_vara_int( ncFile, nc_var, start, count, variable_array ); }
    else
    {
        long* lptr = new long[number_values];
        for( int jj = 0; jj < number_values; jj++ )
            lptr[jj] = variable_array[jj];
        fail = nc_put_vara_long( ncFile, nc_var, start, count, lptr );
        delete[] lptr;
    }

    if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed to store variable " << variable_name ); }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_file ( const char *  exodus_file_name,
const bool  overwrite,
const FileOptions opts,
const EntityHandle output_list,
const int  num_sets,
const std::vector< std::string > &  qa_records,
const Tag = NULL,
int  = 0,
int  user_dimension = 3 
) [virtual]

writes out an ExoII file

Implements moab::WriterIface.

Definition at line 167 of file WriteNCDF.cpp.

References moab::Range::begin(), moab::Range::clear(), moab::Range::empty(), moab::Range::end(), entities, moab::fail(), gather_mesh_information(), moab::FileOptions::get_null_option(), GET_VAR, MB_FAILURE, MB_FILE_WRITE_ERROR, MB_SET_ERR, MB_SUCCESS, MBENTITYSET, mdbImpl, mDirichletSetTag, MESHSET_SET, mMaterialSetTag, mNeumannSetTag, ncFile, moab::WriteNCDF::ExodusMeshInfo::nodes, moab::WriteNCDF::ExodusMeshInfo::num_dim, moab::WriteNCDF::ExodusMeshInfo::num_elements, moab::WriteNCDF::ExodusMeshInfo::num_nodes, moab::WriteNCDF::ExodusMeshInfo::polyhedronFaces, moab::WriteNCDF::ExodusMeshInfo::qaRecords, repeat_face_blocks, reset_block(), time_and_date(), write_BCs(), write_element_order_map(), write_elementblocks(), write_global_element_order_map(), write_global_node_order_map(), write_header(), write_nodes(), write_poly_faces(), and write_qa_records().

{
    assert( 0 != mMaterialSetTag && 0 != mNeumannSetTag && 0 != mDirichletSetTag );

    if( user_dimension == 0 ) mdbImpl->get_dimension( user_dimension );

    if( opts.get_null_option( "REPEAT_FACE_BLOCKS" ) == MB_SUCCESS ) repeat_face_blocks = 1;

    std::vector< EntityHandle > blocks, nodesets, sidesets, entities;

    // Separate into blocks, nodesets, sidesets

    if( num_sets == 0 )
    {
        // Default to all defined block, nodeset and sideset-type sets
        Range this_range;
        mdbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &mMaterialSetTag, NULL, 1, this_range );
        std::copy( this_range.begin(), this_range.end(), std::back_inserter( blocks ) );
        this_range.clear();
        mdbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &mDirichletSetTag, NULL, 1, this_range );
        std::copy( this_range.begin(), this_range.end(), std::back_inserter( nodesets ) );
        this_range.clear();
        mdbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &mNeumannSetTag, NULL, 1, this_range );
        std::copy( this_range.begin(), this_range.end(), std::back_inserter( sidesets ) );

        // If there is nothing to write, write everything as one block.
        if( blocks.empty() && nodesets.empty() && sidesets.empty() )
        {
            this_range.clear();
            for( int d = user_dimension; d > 0 && this_range.empty(); --d )
                mdbImpl->get_entities_by_dimension( 0, d, this_range, false );
            if( this_range.empty() ) return MB_FILE_WRITE_ERROR;

            EntityHandle block_handle;
            int block_id = 1;
            mdbImpl->create_meshset( MESHSET_SET, block_handle );
            mdbImpl->tag_set_data( mMaterialSetTag, &block_handle, 1, &block_id );
            mdbImpl->add_entities( block_handle, this_range );
            blocks.push_back( block_handle );
        }
    }
    else
    {
        int dummy;
        for( const EntityHandle* iter = ent_handles; iter < ent_handles + num_sets; ++iter )
        {
            if( MB_SUCCESS == mdbImpl->tag_get_data( mMaterialSetTag, &( *iter ), 1, &dummy ) && -1 != dummy )
                blocks.push_back( *iter );
            else if( MB_SUCCESS == mdbImpl->tag_get_data( mDirichletSetTag, &( *iter ), 1, &dummy ) && -1 != dummy )
                nodesets.push_back( *iter );
            else if( MB_SUCCESS == mdbImpl->tag_get_data( mNeumannSetTag, &( *iter ), 1, &dummy ) && -1 != dummy )
                sidesets.push_back( *iter );
        }
    }

    // If there is nothing to write just return.
    if( blocks.empty() && nodesets.empty() && sidesets.empty() ) return MB_FILE_WRITE_ERROR;

    // Try to get mesh information
    ExodusMeshInfo mesh_info;

    std::vector< MaterialSetData > block_info;
    std::vector< NeumannSetData > sideset_info;
    std::vector< DirichletSetData > nodeset_info;

    mesh_info.num_dim = user_dimension;

    if( qa_records.empty() )
    {
        // qa records are empty - initialize some MB-standard ones
        mesh_info.qaRecords.push_back( "MB" );
        mesh_info.qaRecords.push_back( "0.99" );
        char string1[80], string2[80];
        time_and_date( string2, string1 );
        mesh_info.qaRecords.push_back( string2 );
        mesh_info.qaRecords.push_back( string1 );
    }
    else
    {
        // Constrained to multiples of 4 qa records
        assert( qa_records.size() % 4 == 0 );

        std::copy( qa_records.begin(), qa_records.end(), std::back_inserter( mesh_info.qaRecords ) );
    }

    block_info.clear();
    if( gather_mesh_information( mesh_info, block_info, sideset_info, nodeset_info, blocks, sidesets, nodesets ) !=
        MB_SUCCESS )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    // Try to open the file after gather mesh info succeeds
    int fail = nc_create( exodus_file_name, overwrite ? NC_CLOBBER : NC_NOCLOBBER, &ncFile );
    if( NC_NOERR != fail )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    if( write_header( mesh_info, block_info, sideset_info, nodeset_info, exodus_file_name ) != MB_SUCCESS )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    {
        // write dummy time_whole
        double timev = 0.0;  // dummy, to make paraview happy
        size_t start = 0, count = 1;
        int nc_var;
        std::vector< int > dims;
        GET_VAR( "time_whole", nc_var, dims );
        fail = nc_put_vara_double( ncFile, nc_var, &start, &count, &timev );
        if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed writing dist factor array" ); }
    }

    if( write_nodes( mesh_info.num_nodes, mesh_info.nodes, mesh_info.num_dim ) != MB_SUCCESS )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    if( !mesh_info.polyhedronFaces.empty() )
    {
        if( write_poly_faces( mesh_info ) != MB_SUCCESS )
        {
            reset_block( block_info );
            return MB_FAILURE;
        }
    }

    if( write_elementblocks( mesh_info, block_info ) )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    // Write the three maps
    if( write_global_node_order_map( mesh_info.num_nodes, mesh_info.nodes ) != MB_SUCCESS )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    if( write_global_element_order_map( mesh_info.num_elements ) != MB_SUCCESS )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    if( write_element_order_map( mesh_info.num_elements ) != MB_SUCCESS )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    /*
     if (write_elementmap(mesh_info) != MB_SUCCESS)
       return MB_FAILURE;
    */

    if( write_BCs( sideset_info, nodeset_info ) != MB_SUCCESS )
    {
        reset_block( block_info );
        return MB_FAILURE;
    }

    if( write_qa_records( mesh_info.qaRecords ) != MB_SUCCESS ) return MB_FAILURE;

    // Copy the qa records into the argument
    // mesh_info.qaRecords.swap(qa_records);
    // Close the file
    fail = nc_close( ncFile );
    if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Trouble closing file" ); }

    return MB_SUCCESS;
}

Definition at line 1185 of file WriteNCDF.cpp.

References moab::error(), MB_FAILURE, MB_SET_ERR, MB_SUCCESS, and write_exodus_integer_variable().

Referenced by write_file().

{
    // Allocate map array
    int* map = new int[num_elements];

    // Many Sandia codes assume this map is unique, and CUBIT does not currently
    // have unique ids for all elements. Therefore, to make sure nothing crashes,
    // insert a dummy map...

    for( int i = 0; i < num_elements; i++ )
        map[i] = i + 1;

    // Output array and cleanup

    int error = write_exodus_integer_variable( "elem_num_map", map, 0, num_elements );

    if( map ) delete[] map;

    if( error < 0 ) { MB_SET_ERR( MB_FAILURE, "Failed writing global element order map" ); }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_global_node_order_map ( int  num_nodes,
Range nodes 
) [private]

Definition at line 1153 of file WriteNCDF.cpp.

References moab::Range::begin(), moab::Range::end(), moab::error(), moab::ID_FROM_HANDLE(), MB_FAILURE, MB_SET_ERR, MB_SUCCESS, and write_exodus_integer_variable().

Referenced by write_file().

{
    // Note: this routine bypasses the standard exodusII interface for efficiency!

    // Node order map
    int* map = new int[num_nodes];

    // For now, output a dummy map!

    Range::iterator range_iter, end_iter;
    range_iter = nodes.begin();
    end_iter   = nodes.end();

    int i = 0;

    for( ; range_iter != end_iter; ++range_iter )
    {
        // TODO -- do we really want to cast this to an int?
        map[i++] = (int)ID_FROM_HANDLE( *range_iter );
    }

    // Output array and cleanup

    int error = write_exodus_integer_variable( "node_num_map", map, 0, num_nodes );

    if( map ) delete[] map;

    if( error < 0 ) { MB_SET_ERR( MB_FAILURE, "Failed writing global node order map" ); }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_header ( ExodusMeshInfo mesh_info,
std::vector< MaterialSetData > &  block_info,
std::vector< NeumannSetData > &  sideset_info,
std::vector< DirichletSetData > &  nodeset_info,
const char *  filename 
) [private]

Definition at line 940 of file WriteNCDF.cpp.

References initialize_exodus_file(), moab::ExoIIInterface::MAX_LINE_LENGTH, MB_FAILURE, MB_SUCCESS, time_and_date(), and moab::TIME_STR_LEN.

Referenced by write_file().

{
    // Get the date and time
    char time[TIME_STR_LEN];
    char date[TIME_STR_LEN];
    time_and_date( time, date );

    std::string title_string = "MOAB";
    title_string.append( "(" );
    title_string.append( filename );
    title_string.append( "): " );
    title_string.append( date );
    title_string.append( ": " );
    title_string.append( "time " );

    if( title_string.length() > ExoIIInterface::MAX_LINE_LENGTH )
        title_string.resize( ExoIIInterface::MAX_LINE_LENGTH );

    // Initialize the exodus file

    int result = initialize_exodus_file( mesh_info, block_info, sideset_info, nodeset_info, title_string.c_str() );

    if( result == MB_FAILURE ) return MB_FAILURE;

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_nodes ( int  num_nodes,
Range nodes,
int  dimension 
) [private]

Definition at line 760 of file WriteNCDF.cpp.

References moab::fail(), moab::WriteUtilIface::get_node_coords(), GET_VAR, moab::ExoIIInterface::MAX_STR_LENGTH, MB_CHK_SET_ERR, MB_FAILURE, MB_SET_ERR, MB_SUCCESS, MB_TAG_NOT_FOUND, MB_TYPE_DOUBLE, mdbImpl, mesh, MESH_TRANSFORM_TAG_NAME, mGlobalIdTag, mWriteIface, and ncFile.

Referenced by write_file().

{
    // Write coordinates names
    int nc_var = -1;
    std::vector< int > dims;
    GET_VAR( "coor_names", nc_var, dims );
    if( -1 == nc_var ) { MB_SET_ERR( MB_FAILURE, "Trouble getting coordinate name variable" ); }

    size_t start[2] = { 0, 0 }, count[2] = { 1, ExoIIInterface::MAX_STR_LENGTH };
    char dum_str[ExoIIInterface::MAX_STR_LENGTH];
    strcpy( dum_str, "x" );
    int fail = nc_put_vara_text( ncFile, nc_var, start, count, dum_str );
    if( NC_NOERR != fail )
    { MB_SET_ERR( MB_FAILURE, "Trouble adding x coordinate name; netcdf message: " << nc_strerror( fail ) ); }

    start[0] = 1;
    strcpy( dum_str, "y" );
    fail = nc_put_vara_text( ncFile, nc_var, start, count, dum_str );
    if( NC_NOERR != fail )
    { MB_SET_ERR( MB_FAILURE, "Trouble adding y coordinate name; netcdf message: " << nc_strerror( fail ) ); }

    start[0] = 2;
    strcpy( dum_str, "z" );
    fail = nc_put_vara_text( ncFile, nc_var, start, count, dum_str );
    if( NC_NOERR != fail )
    { MB_SET_ERR( MB_FAILURE, "Trouble adding z coordinate name; netcdf message: " << nc_strerror( fail ) ); }

    // See if should transform coordinates
    ErrorCode result;
    Tag trans_tag;
    result                = mdbImpl->tag_get_handle( MESH_TRANSFORM_TAG_NAME, 16, MB_TYPE_DOUBLE, trans_tag );
    bool transform_needed = true;
    if( result == MB_TAG_NOT_FOUND ) transform_needed = false;

    int num_coords_to_fill = transform_needed ? 3 : dimension;

    std::vector< double* > coord_arrays( 3 );
    coord_arrays[0] = new double[num_nodes];
    coord_arrays[1] = new double[num_nodes];
    coord_arrays[2] = NULL;

    if( num_coords_to_fill == 3 ) coord_arrays[2] = new double[num_nodes];

    result = mWriteIface->get_node_coords( dimension, num_nodes, nodes, mGlobalIdTag, 1, coord_arrays );
    if( result != MB_SUCCESS )
    {
        delete[] coord_arrays[0];
        delete[] coord_arrays[1];
        if( coord_arrays[2] ) delete[] coord_arrays[2];
        return result;
    }

    if( transform_needed )
    {
        double trans_matrix[16];
        const EntityHandle mesh = 0;
        result                  = mdbImpl->tag_get_data( trans_tag, &mesh, 0, trans_matrix );MB_CHK_SET_ERR( result, "Couldn't get transform data" );

        for( int i = 0; i < num_nodes; i++ )
        {
            double vec1[3];
            double vec2[3];

            vec2[0] = coord_arrays[0][i];
            vec2[1] = coord_arrays[1][i];
            vec2[2] = coord_arrays[2][i];

            for( int row = 0; row < 3; row++ )
            {
                vec1[row] = 0.0;
                for( int col = 0; col < 3; col++ )
                    vec1[row] += ( trans_matrix[( row * 4 ) + col] * vec2[col] );
            }

            coord_arrays[0][i] = vec1[0];
            coord_arrays[1][i] = vec1[1];
            coord_arrays[2][i] = vec1[2];
        }
    }

    // Write the nodes
    nc_var = -1;
    GET_VAR( "coord", nc_var, dims );
    if( -1 == nc_var ) { MB_SET_ERR( MB_FAILURE, "Trouble getting coordinate variable" ); }
    start[0] = 0;
    count[1] = num_nodes;
    fail     = nc_put_vara_double( ncFile, nc_var, start, count, &( coord_arrays[0][0] ) );
    if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Trouble writing x coordinate" ); }

    start[0] = 1;
    fail     = nc_put_vara_double( ncFile, nc_var, start, count, &( coord_arrays[1][0] ) );
    if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Trouble writing y coordinate" ); }

    start[0] = 2;
    fail     = nc_put_vara_double( ncFile, nc_var, start, count, &( coord_arrays[2][0] ) );
    if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Trouble writing z coordinate" ); }

    delete[] coord_arrays[0];
    delete[] coord_arrays[1];
    if( coord_arrays[2] ) delete[] coord_arrays[2];

    return MB_SUCCESS;
}

Definition at line 864 of file WriteNCDF.cpp.

References moab::Range::begin(), conn, moab::Range::empty(), moab::Range::end(), moab::fail(), GET_DIM, GET_VAR, INS_ID, MB_CHK_ERR, MB_FAILURE, MB_SET_ERR, MB_SET_ERR_CONT, MB_SUCCESS, mdbImpl, ncFile, moab::WriteNCDF::ExodusMeshInfo::num_polyhedra_blocks, polyg, moab::WriteNCDF::ExodusMeshInfo::polyhedronFaces, repeat_face_blocks, moab::Range::size(), and write_exodus_integer_variable().

Referenced by write_file().

{
    // write all polygons that are not in another element block;
    // usually they are nowhere else, but be sure, write in this block only ones that are not in the
    // other blocks
    Range pfaces = mesh_info.polyhedronFaces;

    /*
     * int fbconn1(num_nod_per_fa1) ;
                fbconn1:elem_type = "nsided" ;
        int fbepecnt1(num_fa_in_blk1) ;
                fbepecnt1:entity_type1 = "NODE" ;
                fbepecnt1:entity_type2 = "FACE" ;
     */
    if( pfaces.empty() ) return MB_SUCCESS;
    char wname[80];
    int nc_var = -1;
    std::vector< int > dims;

    // write one for each element block, to make paraview and visit happy
    int num_faces_in_block = (int)pfaces.size();
    for( unsigned int bl = 0; bl < mesh_info.num_polyhedra_blocks; bl++ )
    {
        INS_ID( wname, "fbconn%u", bl + 1 );  // it is the first block
        GET_VAR( wname, nc_var, dims );       // fbconn# variable, 1 dimensional

        INS_ID( wname, "num_nod_per_fa%u", bl + 1 );
        int ncdim, num_nod_per_face;
        GET_DIM( ncdim, wname, num_nod_per_face );
        int* connectivity = new int[num_nod_per_face];
        int ixcon = 0, j = 0;
        std::vector< int > fbepe( num_faces_in_block );  // fbepecnt1
        for( Range::iterator eit = pfaces.begin(); eit != pfaces.end(); eit++ )
        {
            EntityHandle polyg       = *eit;
            int nnodes               = 0;
            const EntityHandle* conn = NULL;
            ErrorCode rval           = mdbImpl->get_connectivity( polyg, conn, nnodes );MB_CHK_ERR( rval );
            for( int k = 0; k < nnodes; k++ )
                connectivity[ixcon++] = conn[k];
            fbepe[j++] = nnodes;
        }
        size_t start[1] = { 0 }, count[1] = { 0 };
        count[0] = ixcon;
        int fail = nc_put_vara_int( ncFile, nc_var, start, count, connectivity );
        if( NC_NOERR != fail )
        {
            delete[] connectivity;
            MB_SET_ERR( MB_FAILURE, "Couldn't write fbconn variable" );
        }

        INS_ID( wname, "fbepecnt%u", bl + 1 );
        GET_VAR( wname, nc_var, dims );  // fbconn# variable, 1 dimensional
        count[0] = num_faces_in_block;

        fail = nc_put_vara_int( ncFile, nc_var, start, count, &fbepe[0] );
        if( NC_NOERR != fail )
        {
            delete[] connectivity;
            MB_SET_ERR( MB_FAILURE, "Couldn't write fbepecnt variable" );
        }

        int id = bl + 1;
        if( write_exodus_integer_variable( "fa_prop1", &id, bl, 1 ) != MB_SUCCESS )
        { MB_SET_ERR_CONT( "Problem writing element block id " << id ); }

        int status = 1;
        if( write_exodus_integer_variable( "fa_status", &status, bl, 1 ) != MB_SUCCESS )
        { MB_SET_ERR( MB_FAILURE, "Problem writing face block status" ); }

        delete[] connectivity;
        if( 0 == repeat_face_blocks ) break;  // do not repeat face blocks
    }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_qa_records ( std::vector< std::string > &  qa_record_list) [private]

Definition at line 722 of file WriteNCDF.cpp.

References MB_SUCCESS, and write_qa_string().

Referenced by write_file().

{
    int i = 0;

    for( std::vector< std::string >::iterator string_it = qa_record_list.begin(); string_it != qa_record_list.end(); )
    {
        for( int j = 0; j < 4; j++ )
            write_qa_string( ( *string_it++ ).c_str(), i, j );
        i++;
    }

    return MB_SUCCESS;
}
ErrorCode moab::WriteNCDF::write_qa_string ( const char *  string,
int  record_number,
int  record_position 
) [private]

Definition at line 736 of file WriteNCDF.cpp.

References moab::fail(), GET_VAR, MB_FAILURE, MB_SET_ERR, MB_SUCCESS, and ncFile.

Referenced by write_qa_records().

{
    // Get the variable id in the exodus file

    std::vector< int > dims;
    int temp_var = -1;
    GET_VAR( "qa_records", temp_var, dims );
    if( -1 == temp_var ) { MB_SET_ERR( MB_FAILURE, "WriteNCDF:: Problem getting qa record variable" ); }
    size_t count[3], start[3];

    // Write out the record
    start[0] = record_number;
    start[1] = record_position;
    start[2] = 0;

    count[0] = 1;
    count[1] = 1;
    count[2] = (long)strlen( string ) + 1;
    int fail = nc_put_vara_text( ncFile, temp_var, start, count, string );
    if( NC_NOERR != fail ) { MB_SET_ERR( MB_FAILURE, "Failed to position qa string variable" ); }

    return MB_SUCCESS;
}

Member Data Documentation

std::string moab::WriteNCDF::exodusFile [private]

file name

Definition at line 130 of file WriteNCDF.hpp.

Meshset Handle for the mesh that is currently being read.

Definition at line 134 of file WriteNCDF.hpp.

Definition at line 139 of file WriteNCDF.hpp.

Referenced by gather_mesh_information(), write_file(), and WriteNCDF().

Definition at line 142 of file WriteNCDF.hpp.

Definition at line 141 of file WriteNCDF.hpp.

Referenced by WriteNCDF().

Cached tags for reading. Note that all these tags are defined when the core is initialized.

Definition at line 138 of file WriteNCDF.hpp.

Referenced by gather_mesh_information(), write_file(), and WriteNCDF().

Definition at line 140 of file WriteNCDF.hpp.

Referenced by gather_mesh_information(), write_file(), and WriteNCDF().

Definition at line 145 of file WriteNCDF.hpp.

Referenced by gather_mesh_information(), and WriteNCDF().

Definition at line 149 of file WriteNCDF.hpp.

Referenced by initialize_exodus_file(), write_file(), and write_poly_faces().

List of all members.


The documentation for this class was generated from the following files:
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