moab::SequenceManager Class Reference

#include <SequenceManager.hpp>

Collaboration diagram for moab::SequenceManager:

Public Member Functions
	SequenceManager (double default_seq_multiplier=1.0)
	~SequenceManager ()
void	clear ()
ErrorCode	find (EntityHandle handle, EntitySequence *&sequence_out)
ErrorCode	find (EntityHandle handle, const EntitySequence *&sequence_out) const
void	get_entities (EntityType type, Range &entities_out) const
void	get_entities (Range &entities_out) const
void	get_entities (EntityType type, std::vector< EntityHandle > &entities_out) const
void	get_entities (std::vector< EntityHandle > &entities_out) const
EntityID	get_number_entities (EntityType type) const
EntityID	get_number_entities () const
const EntitySequence *	get_last_accessed_sequence (EntityType type) const
ErrorCode	replace_subsequence (EntitySequence *new_seq)
	Replace subset of existing sequence with new sequence (splits existing sequence)
ErrorCode	check_valid_entities (Error *error_handler, const Range &entities) const
ErrorCode	check_valid_entities (Error *error_handler, const EntityHandle entities[], size_t num_entities, bool root_set_okay=false) const
ErrorCode	delete_entity (Error *error_handler, EntityHandle entity)
ErrorCode	delete_entities (Error *error_handler, const Range &entities)
ErrorCode	create_vertex (const double coords[3], EntityHandle &handle_out)
ErrorCode	create_element (EntityType type, const EntityHandle *conn_array, unsigned num_vertices, EntityHandle &handle_out)
ErrorCode	create_mesh_set (unsigned flags, EntityHandle &handle_out)
ErrorCode	allocate_mesh_set (EntityHandle at_this_handle, unsigned flags)
ErrorCode	create_entity_sequence (EntityType type, EntityID num_entities, int nodes_per_entity, EntityID start_id_hint, EntityHandle &first_handle_out, EntitySequence *&sequence_out, int sequence_size)
	Allocate a block of consecutive entity handles.
ErrorCode	create_meshset_sequence (EntityID num_sets, EntityID start_id_hint, const unsigned *flags, EntityHandle &first_handle_out, EntitySequence *&sequence_out)
	Allocate a block of consecutive mesh sets.
ErrorCode	create_meshset_sequence (EntityID num_sets, EntityID start_id_hint, unsigned flags, EntityHandle &first_handle_out, EntitySequence *&sequence_out)
	Allocate a block of consecutive mesh sets.
ErrorCode	create_scd_sequence (int imin, int jmin, int kmin, int imax, int jmax, int kmax, EntityType type, EntityID start_id_hint, EntityHandle &first_handle_out, EntitySequence *&sequence_out, int *is_periodic=NULL)
ErrorCode	create_scd_sequence (const HomCoord &coord_min, const HomCoord &coord_max, EntityType type, EntityID start_id_hint, EntityHandle &first_handle_out, EntitySequence *&sequence_out, int *is_periodic=NULL)
ErrorCode	create_sweep_sequence (int imin, int jmin, int kmin, int imax, int jmax, int kmax, int *Cq, EntityType type, EntityID start_id_hint, EntityHandle &first_handle_out, EntitySequence *&sequence_out)
ErrorCode	create_sweep_sequence (const HomCoord &coord_min, const HomCoord &coord_max, int *Cq, EntityType type, EntityID start_id_hint, EntityHandle &first_handle_out, EntitySequence *&sequence_out)
ErrorCode	add_vsequence (EntitySequence *vert_seq, EntitySequence *elem_seq, const HomCoord &p1, const HomCoord &q1, const HomCoord &p2, const HomCoord &q2, const HomCoord &p3, const HomCoord &q3, bool bb_input=false, const HomCoord *bb_min=NULL, const HomCoord *bb_max=NULL)
TypeSequenceManager &	entity_map (EntityType type)
const TypeSequenceManager &	entity_map (EntityType type) const
void	get_memory_use (unsigned long long &total_entity_storage, unsigned long long &total_storage) const
void	get_memory_use (EntityType type, unsigned long long &total_entity_storage, unsigned long long &total_storage) const
void	get_memory_use (const Range &entities, unsigned long long &total_entity_storage, unsigned long long &total_amortized_storage) const
ErrorCode	reserve_tag_array (Error *error_handler, int tag_size, int &array_id_out)
ErrorCode	release_tag_array (Error *error_handler, int id, bool release_id)
EntityID	new_sequence_size (EntityHandle start_handle, EntityID requested_size, int sequence_size) const
	Size to allocate for new SquenceData THIS FUNCTION SHOULD ONLY BE CALLED WHEN ALLOCATING FROM ReadUtil IN BULK (since it will allocate lesser of requested_size and default_size) If sequence_size != -1, will try to allocate that, unless there isn't available space.
double	get_sequence_multiplier () const
	Interface to control memory allocation for sequences Provide a factor that controls the size of the sequence that gets allocated. This is typically useful in the parallel setting when a-priori, the number of ghost entities and the memory required for them within the same sequence as the owned entities are unknown. The default factor is 1.0 but this can be appropriately updated at runtime so that we do not have broken sequences.
void	set_sequence_multiplier (double factor)
	Interface to control memory allocation for sequences Provide a factor that controls the size of the sequence that gets allocated. This is typically useful in the parallel setting when a-priori, the number of ghost entities and the memory required for them within the same sequence as the owned entities are unknown. The default factor is 1.0 but this can be appropriately updated at runtime so that we do not have broken sequences.
Static Public Member Functions
static EntityID	default_poly_sequence_size (int entity_connectivity_length)
	Get default size of POLYGON and POLYHEDRON SequenceData.
Static Public Attributes
static const EntityID	DEFAULT_VERTEX_SEQUENCE_SIZE = 16 * 1024
	Default allocation size for vertices.
static const EntityID	DEFAULT_ELEMENT_SEQUENCE_SIZE = DEFAULT_VERTEX_SEQUENCE_SIZE
	Default allocation size for elements.
static const EntityID	DEFAULT_POLY_SEQUENCE_SIZE = 16 * 1024
	Default allocation size for poly's.
static const EntityID	DEFAULT_MESHSET_SEQUENCE_SIZE = DEFAULT_VERTEX_SEQUENCE_SIZE
	Default allocation size for meshsets.
Private Member Functions
void	trim_sequence_block (EntityHandle start_handle, EntityHandle &end_handle_in_out, unsigned maximum_sequence_size)
	Utility function for allocate_mesh_set (and similar)
EntityHandle	sequence_start_handle (EntityType type, EntityID entity_count, int values_per_entity, EntityID start_id_hint, SequenceData *&data_out, EntityID &data_size)
	Get range of handles in which to create an entity sequence.
Private Attributes
TypeSequenceManager	typeData [MBMAXTYPE]
std::vector< int >	tagSizes
double	sequence_multiplier
	The over-allocation factor for entities in a sequence (strictly >= 1.0)

---

Detailed Description

Definition at line 14 of file SequenceManager.hpp.

---

Constructor & Destructor Documentation

moab::SequenceManager::SequenceManager

(

double

default_seq_multiplier = 1.0

)

[inline]

Definition at line 17 of file SequenceManager.hpp.

: sequence_multiplier( default_seq_multiplier ) {}

moab::SequenceManager::~SequenceManager

(

)

Definition at line 36 of file SequenceManager.cpp.

References MB_VARIABLE_LENGTH, release_tag_array(), and tagSizes.

{
    // Release variable-length tag data
    for( unsigned i = 0; i < tagSizes.size(); ++i )
        if( tagSizes[i] == MB_VARIABLE_LENGTH ) release_tag_array( 0, i, false );
}

---

Member Function Documentation

ErrorCode moab::SequenceManager::add_vsequence	(	EntitySequence *	vert_seq,
		EntitySequence *	elem_seq,
		const HomCoord &	p1,
		const HomCoord &	q1,
		const HomCoord &	p2,
		const HomCoord &	q2,
		const HomCoord &	p3,
		const HomCoord &	q3,
		bool	bb_input = false,
		const HomCoord *	bb_min = NULL,
		const HomCoord *	bb_max = NULL
	)

Add a structured vertex sequence to this structured element sequence; see comments in ScdElementData

Definition at line 736 of file SequenceManager.cpp.

References moab::ScdElementData::add_vsequence(), moab::EntitySequence::data(), and moab::HomCoord::unitv.

{
    // Check first that they're structured vtx/elem sequences
    ScdVertexData* scd_vd = dynamic_cast< ScdVertexData* >( vert_seq->data() );
    if( !scd_vd ) return MB_FAILURE;

    ScdElementData* scd_ed = dynamic_cast< ScdElementData* >( elem_seq->data() );
    if( !scd_ed ) return MB_FAILURE;

    if( bb_min && bb_max )
        return scd_ed->add_vsequence( scd_vd, p1, q1, p2, q2, p3, q3, bb_input, *bb_min, *bb_max );
    else
        return scd_ed->add_vsequence( scd_vd, p1, q1, p2, q2, p3, q3, bb_input, HomCoord::unitv[0],
                                      HomCoord::unitv[0] );
}

ErrorCode moab::SequenceManager::allocate_mesh_set	(	EntityHandle	at_this_handle,
		unsigned	flags
	)

Allocate an entity set with the specified handle.

Returns:

MB_ALREADY_ALLOCATED if handle is in use, MB_SUCCESS otherwise.

Definition at line 340 of file SequenceManager.cpp.

References moab::EntitySequence::data(), DEFAULT_MESHSET_SEQUENCE_SIZE, moab::EntitySequence::end_handle(), ErrorCode, moab::TypeSequenceManager::insert_sequence(), moab::TypeSequenceManager::is_free_handle(), MB_SUCCESS, MBENTITYSET, moab::TypeSequenceManager::notify_appended(), moab::TypeSequenceManager::notify_prepended(), moab::MeshSetSequence::pop_back(), moab::MeshSetSequence::pop_front(), moab::MeshSetSequence::push_back(), moab::MeshSetSequence::push_front(), moab::EntitySequence::start_handle(), trim_sequence_block(), and typeData.

{
    SequenceData* data = 0;
    TypeSequenceManager::iterator seqptr;
    EntityHandle block_start = 1, block_end = 0;
    ErrorCode rval = typeData[MBENTITYSET].is_free_handle( handle, seqptr, data, block_start, block_end );
    if( MB_SUCCESS != rval ) return rval;

    MeshSetSequence* seq;
    if( seqptr != typeData[MBENTITYSET].end() )
    {
        seq = static_cast< MeshSetSequence* >( *seqptr );
        if( seq->start_handle() - 1 == handle )
        {
            rval = seq->push_front( 1, &flags );
            if( MB_SUCCESS == rval )
            {
                rval = typeData[MBENTITYSET].notify_prepended( seqptr );
                if( MB_SUCCESS != rval ) seq->pop_front( 1 );
            }
            return rval;
        }
        else if( seq->end_handle() + 1 == handle )
        {
            rval = seq->push_back( 1, &flags );
            if( MB_SUCCESS == rval )
            {
                rval = typeData[MBENTITYSET].notify_appended( seqptr );
                if( MB_SUCCESS != rval ) seq->pop_back( 1 );
            }
            return rval;
        }
        else
            return MB_FAILURE;  // Should be unreachable
    }
    else
    {
        if( data )
        {
            seq = new MeshSetSequence( handle, 1, flags, data );
        }
        else
        {
            assert( handle >= block_start && handle <= block_end );
            trim_sequence_block( handle, block_end, DEFAULT_MESHSET_SEQUENCE_SIZE );
            seq = new MeshSetSequence( handle, 1, flags, block_end - handle + 1 );
        }

        rval = typeData[MBENTITYSET].insert_sequence( seq );
        if( MB_SUCCESS != rval )
        {
            SequenceData* vdata = seq->data();
            delete seq;
            if( !data ) delete vdata;
            return rval;
        }

        return MB_SUCCESS;
    }
}

ErrorCode moab::SequenceManager::check_valid_entities	(	Error *	error_handler,
		const Range &	entities
	)		const

Check if passed entity handles are valid

Definition at line 78 of file SequenceManager.cpp.

References moab::TypeSequenceManager::check_valid_handles(), moab::Range::const_pair_begin(), moab::Range::const_pair_end(), moab::CREATE_HANDLE(), ErrorCode, MB_SUCCESS, split, moab::TYPE_FROM_HANDLE(), and typeData.

Referenced by moab::BitTag::clear_data(), moab::VarLenSparseTag::clear_data(), moab::SparseTag::clear_data(), delete_entities(), moab::BitTag::set_data(), moab::SparseTag::set_data(), moab::VarLenSparseTag::set_data(), and moab::SparseTag::tag_iterate().

{
    ErrorCode rval;
    Range::const_pair_iterator i;
    for( i = entities.const_pair_begin(); i != entities.const_pair_end(); ++i )
    {
        const EntityType type1 = TYPE_FROM_HANDLE( i->first );
        const EntityType type2 = TYPE_FROM_HANDLE( i->second );
        if( type1 == type2 )
        {
            rval = typeData[type1].check_valid_handles( NULL, i->first, i->second );
            if( MB_SUCCESS != rval ) return rval;
        }
        else
        {
            int junk;
            EntityHandle split = CREATE_HANDLE( type2, 0, junk );
            rval               = typeData[type1].check_valid_handles( NULL, i->first, split - 1 );
            if( MB_SUCCESS != rval ) return rval;
            rval = typeData[type2].check_valid_handles( NULL, split, i->second );
            if( MB_SUCCESS != rval ) return rval;
        }
    }

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::check_valid_entities	(	Error *	error_handler,
		const EntityHandle	entities[],
		size_t	num_entities,
		bool	root_set_okay = false
	)		const

Check if passed entity handles are valid

Parameters:

root_set_okay

If true, do not returnan error if the passed array contains one or more zero-valued handles

void moab::SequenceManager::clear

(

)

Delete all contained data

Definition at line 43 of file SequenceManager.cpp.

References MBMAXTYPE, MBVERTEX, sequence_multiplier, t, and typeData.

{
    // reset sequence multiplier
    sequence_multiplier = 1.0;

    // Destroy all TypeSequenceManager instances
    for( EntityType t = MBVERTEX; t < MBMAXTYPE; ++t )
        typeData[t].~TypeSequenceManager();

    // Now re-create TypeSequenceManager instances
    for( EntityType t = MBVERTEX; t < MBMAXTYPE; ++t )
        new( typeData + t ) TypeSequenceManager();
}

ErrorCode moab::SequenceManager::create_element	(	EntityType	type,
		const EntityHandle *	conn_array,
		unsigned	num_vertices,
		EntityHandle &	handle_out
	)

Allocate a element (possibly in an existing sequence) and assign it the passed connectivity.

Definition at line 219 of file SequenceManager.cpp.

References moab::CREATE_HANDLE(), moab::EntitySequence::data(), DEFAULT_ELEMENT_SEQUENCE_SIZE, default_poly_sequence_size(), moab::EntitySequence::end_handle(), ErrorCode, moab::TypeSequenceManager::find_free_handle(), moab::TypeSequenceManager::find_free_sequence(), moab::TypeSequenceManager::insert_sequence(), MB_END_ID, MB_START_ID, MB_SUCCESS, MB_TYPE_OUT_OF_RANGE, MBENTITYSET, MBPOLYGON, MBPOLYHEDRON, moab::TypeSequenceManager::notify_appended(), moab::TypeSequenceManager::notify_prepended(), moab::UnstructuredElemSeq::push_back(), moab::UnstructuredElemSeq::push_front(), moab::UnstructuredElemSeq::set_connectivity(), size, moab::EntitySequence::start_handle(), and typeData.

{
    if( type <= MBVERTEX || type >= MBENTITYSET ) return MB_TYPE_OUT_OF_RANGE;

    const EntityHandle start = CREATE_HANDLE( type, MB_START_ID );
    const EntityHandle end   = CREATE_HANDLE( type, MB_END_ID );
    bool append;
    TypeSequenceManager::iterator seq = typeData[type].find_free_handle( start, end, append, conn_len );
    UnstructuredElemSeq* eseq;

    if( seq == typeData[type].end() )
    {
        SequenceData* seq_data = 0;
        unsigned size          = DEFAULT_ELEMENT_SEQUENCE_SIZE;
        if( type == MBPOLYGON || type == MBPOLYHEDRON )
        {
            size = default_poly_sequence_size( conn_len );
        }
        EntityID seq_data_size = 0;
        handle = typeData[type].find_free_sequence( size, start, end, seq_data, seq_data_size, conn_len );
        if( !handle ) return MB_FAILURE;

        if( MBPOLYGON == type || MBPOLYHEDRON == type )
        {
            if( seq_data )
                eseq = new PolyElementSeq( handle, 1, conn_len, seq_data );
            else
                eseq = new PolyElementSeq( handle, 1, conn_len, size );
        }
        else
        {
            if( seq_data )
                eseq = new UnstructuredElemSeq( handle, 1, conn_len, seq_data );
            else
                eseq = new UnstructuredElemSeq( handle, 1, conn_len, size );
        }

        ErrorCode rval = typeData[type].insert_sequence( eseq );
        if( MB_SUCCESS != rval )
        {
            SequenceData* vdata = eseq->data();
            delete eseq;
            if( !seq_data ) delete vdata;

            return rval;
        }
    }
    else
    {
        eseq = reinterpret_cast< UnstructuredElemSeq* >( *seq );
        if( append )
        {
            eseq->push_back( 1 );
            handle = eseq->end_handle();
            typeData[type].notify_appended( seq );
        }
        else
        {
            eseq->push_front( 1 );
            handle = eseq->start_handle();
            typeData[type].notify_prepended( seq );
        }
    }

    return eseq->set_connectivity( handle, conn, conn_len );
}

ErrorCode moab::SequenceManager::create_entity_sequence	(	EntityType	type,
		EntityID	num_entities,
		int	nodes_per_entity,
		EntityID	start_id_hint,
		EntityHandle &	first_handle_out,
		EntitySequence *&	sequence_out,
		int	sequence_size
	)

Allocate a block of consecutive entity handles.

Allocate a block of consecutive entity handles. Handles may be appended or prepended to an existing entity sequence.

Parameters:

type	The type of of entity for which to allocate handles
num_entities	Number of entities to allocate
nodes_per_entity	Number of nodes in connectivity for elements, ignored MBVERTEX, MBPOLYGON, MBPOLYHEDRON, and MBENTITYSET types.
start_id_hint	Preferred ID portion for first handle. May be ignored if not available.
first_handle_out	First allocated handle. Allocated handles are [first_handle_out, first_handle_out+num_entities-1].
sequence_out	The sequence in which the entities were allocated. NOTE: first_handle_out may not be first handle in sequence.
sequence_size	If specified, allocate this sequence size instead of DEFAULT_***_SEQUENCE_SIZE

Definition at line 451 of file SequenceManager.cpp.

References moab::EntitySequence::data(), default_poly_sequence_size(), ErrorCode, moab::TypeSequenceManager::insert_sequence(), MB_INDEX_OUT_OF_RANGE, MB_MEMORY_ALLOCATION_FAILED, MB_SUCCESS, MB_TYPE_OUT_OF_RANGE, MBENTITYSET, MBMAXTYPE, MBPOLYGON, MBPOLYHEDRON, MBVERTEX, new_sequence_size(), sequence_start_handle(), and typeData.

Referenced by moab::ReadUtil::get_element_connect(), moab::ReadUtil::get_node_coords(), and mb_range_seq_intersect_test().

{
    SequenceData* data = NULL;
    EntityID data_size = 0;
    handle             = sequence_start_handle( type, count, size, start, data, data_size );

    if( !handle ) return MB_MEMORY_ALLOCATION_FAILED;

    switch( type )
    {
        case MBENTITYSET:
        case MBMAXTYPE:
            return MB_TYPE_OUT_OF_RANGE;

        case MBVERTEX:
            if( size != 0 ) return MB_INDEX_OUT_OF_RANGE;

            if( data )
                sequence = new VertexSequence( handle, count, data );
            else
            {
                if( !data_size ) data_size = new_sequence_size( handle, count, sequence_size );
                sequence = new VertexSequence( handle, count, data_size );
            }
            break;

        case MBPOLYGON:
        case MBPOLYHEDRON:
            if( size == 0 ) return MB_INDEX_OUT_OF_RANGE;

            if( data )
                sequence = new PolyElementSeq( handle, count, size, data );
            else
            {
                if( !data_size )
                    data_size = new_sequence_size(
                        handle, count, ( -1 == sequence_size ? default_poly_sequence_size( size ) : sequence_size ) );
                sequence = new PolyElementSeq( handle, count, size, data_size );
            }
            break;

        default:
            if( size == 0 ) return MB_INDEX_OUT_OF_RANGE;

            if( data )
                sequence = new UnstructuredElemSeq( handle, count, size, data );
            else
            {
                if( !data_size ) data_size = new_sequence_size( handle, count, sequence_size );
                sequence = new UnstructuredElemSeq( handle, count, size, data_size );
            }
            // tjt calling new_sequence_size 'cuz don't have a sequence data;
            // start 41467, count 246
            break;
    }

    ErrorCode result = typeData[type].insert_sequence( sequence );
    if( MB_SUCCESS != result )
    {
        // Change to NULL if had an existing data or if no existing data,
        // change to the new data created
        data = data ? 0 : sequence->data();
        delete sequence;
        delete data;
        return result;
    }

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::create_mesh_set	(	unsigned	flags,
		EntityHandle &	handle_out
	)

Allocate an entity set (possibly in an existing sequence)

Definition at line 289 of file SequenceManager.cpp.

References moab::CREATE_HANDLE(), moab::EntitySequence::data(), DEFAULT_MESHSET_SEQUENCE_SIZE, moab::EntitySequence::end_handle(), ErrorCode, moab::TypeSequenceManager::find_free_handle(), moab::TypeSequenceManager::find_free_sequence(), moab::TypeSequenceManager::insert_sequence(), MB_END_ID, MB_START_ID, MB_SUCCESS, MBENTITYSET, moab::TypeSequenceManager::notify_appended(), moab::TypeSequenceManager::notify_prepended(), moab::MeshSetSequence::push_back(), moab::MeshSetSequence::push_front(), moab::EntitySequence::start_handle(), and typeData.

{
    const EntityHandle start = CREATE_HANDLE( MBENTITYSET, MB_START_ID );
    const EntityHandle end   = CREATE_HANDLE( MBENTITYSET, MB_END_ID );
    bool append;
    TypeSequenceManager::iterator seq = typeData[MBENTITYSET].find_free_handle( start, end, append );
    MeshSetSequence* msseq;

    if( seq == typeData[MBENTITYSET].end() )
    {
        SequenceData* seq_data = 0;
        EntityID seq_data_size = 0;
        handle = typeData[MBENTITYSET].find_free_sequence( DEFAULT_MESHSET_SEQUENCE_SIZE, start, end, seq_data,
                                                           seq_data_size );
        if( !handle ) return MB_FAILURE;

        if( seq_data )
            msseq = new MeshSetSequence( handle, 1, flags, seq_data );
        else
            msseq = new MeshSetSequence( handle, 1, flags, DEFAULT_MESHSET_SEQUENCE_SIZE );

        ErrorCode rval = typeData[MBENTITYSET].insert_sequence( msseq );
        if( MB_SUCCESS != rval )
        {
            SequenceData* vdata = msseq->data();
            delete msseq;
            if( !seq_data ) delete vdata;

            return rval;
        }
    }
    else
    {
        msseq = reinterpret_cast< MeshSetSequence* >( *seq );
        if( append )
        {
            msseq->push_back( 1, &flags );
            handle = msseq->end_handle();
            typeData[MBENTITYSET].notify_appended( seq );
        }
        else
        {
            msseq->push_front( 1, &flags );
            handle = msseq->start_handle();
            typeData[MBENTITYSET].notify_prepended( seq );
        }
    }

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::create_meshset_sequence	(	EntityID	num_sets,
		EntityID	start_id_hint,
		const unsigned *	flags,
		EntityHandle &	first_handle_out,
		EntitySequence *&	sequence_out
	)

Allocate a block of consecutive mesh sets.

Allocate a block of consecutive entity handles. Handles may be appended or prepended to an existing entity sequence.

Parameters:

type	The type of of entity for which to allocate handles
num_sets	Number of entities to allocate
start_id_hint	Preferred ID portion for first handle. May be ignored if not available.
processor_id	Processor ID to embed in handles
flags	Array of length 'num_sets' containing entity set creating flags.
first_handle_out	First allocated handle. Allocated handles are [first_handle_out, first_handle_out+num_entities-1].
sequence_out	The sequence in which the entities were allocated. NOTE: first_handle_out may not be first handle in sequence.

Definition at line 527 of file SequenceManager.cpp.

References moab::EntitySequence::data(), ErrorCode, moab::TypeSequenceManager::insert_sequence(), MB_MEMORY_ALLOCATION_FAILED, MB_SUCCESS, MBENTITYSET, sequence_start_handle(), and typeData.

Referenced by moab::ReadUtil::create_entity_sets().

{
    SequenceData* data = 0;
    EntityID data_size = 0;
    handle             = sequence_start_handle( MBENTITYSET, count, 0, start, data, data_size );

    if( !handle ) return MB_MEMORY_ALLOCATION_FAILED;

    if( data )
        sequence = new MeshSetSequence( handle, count, flags, data );
    else
        sequence = new MeshSetSequence( handle, count, flags, count );

    ErrorCode result = typeData[MBENTITYSET].insert_sequence( sequence );
    if( MB_SUCCESS != result )
    {
        // Change to NULL if had an existing data or if no existing data,
        // change to the new data created
        data = data ? 0 : sequence->data();
        delete sequence;
        delete data;
        return result;
    }

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::create_meshset_sequence	(	EntityID	num_sets,
		EntityID	start_id_hint,
		unsigned	flags,
		EntityHandle &	first_handle_out,
		EntitySequence *&	sequence_out
	)

Allocate a block of consecutive mesh sets.

Alternate form that creates all mesh sets with same flags.

Definition at line 558 of file SequenceManager.cpp.

References moab::EntitySequence::data(), ErrorCode, moab::TypeSequenceManager::insert_sequence(), MB_MEMORY_ALLOCATION_FAILED, MB_SUCCESS, MBENTITYSET, sequence_start_handle(), and typeData.

{
    SequenceData* data = 0;
    EntityID data_size = 0;
    handle             = sequence_start_handle( MBENTITYSET, count, 0, start, data, data_size );
    if( !handle ) return MB_MEMORY_ALLOCATION_FAILED;

    if( data )
        sequence = new MeshSetSequence( handle, count, flags, data );
    else
        sequence = new MeshSetSequence( handle, count, flags, count );

    ErrorCode result = typeData[MBENTITYSET].insert_sequence( sequence );
    if( MB_SUCCESS != result )
    {
        // Change to NULL if had an existing data or if no existing data,
        // change to the new data created
        data = data ? 0 : sequence->data();
        delete sequence;
        delete data;
        return result;
    }

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::create_scd_sequence	(	int	imin,
		int	jmin,
		int	kmin,
		int	imax,
		int	jmax,
		int	kmax,
		EntityType	type,
		EntityID	start_id_hint,
		EntityHandle &	first_handle_out,
		EntitySequence *&	sequence_out,
		int *	is_periodic = NULL
	)

Create structured mesh

Definition at line 588 of file SequenceManager.cpp.

References moab::EntitySequence::data(), moab::CN::Dimension(), ErrorCode, moab::TypeSequenceManager::insert_sequence(), MB_MEMORY_ALLOCATION_FAILED, MB_SUCCESS, MB_TYPE_OUT_OF_RANGE, MBEDGE, MBHEX, MBQUAD, MBVERTEX, sequence_start_handle(), moab::SequenceData::size(), and typeData.

Referenced by moab::ScdInterface::construct_box(), create_scd_sequence(), moab::ScdInterface::create_scd_sequence(), and testA().

{
    int this_dim = CN::Dimension( type );

    // Use > instead of != in the following assert to also catch cases where imin > imax, etc.
    assert( ( this_dim < 3 || kmax > kmin ) && ( this_dim < 2 || jmax > jmin ) && ( this_dim < 1 || imax > imin ) );

    // Compute # entities; not as easy as it would appear...
    EntityID num_ent;
    if( MBVERTEX == type )
        num_ent = (EntityID)( imax - imin + 1 ) * (EntityID)( jmax - jmin + 1 ) * (EntityID)( kmax - kmin + 1 );
    else
    {
        num_ent = ( imax - imin + ( is_periodic && is_periodic[0] ? 1 : 0 ) ) *
                  ( this_dim >= 2 ? ( jmax - jmin + ( is_periodic && is_periodic[1] ? 1 : 0 ) ) : 1 ) *
                  ( this_dim >= 3 ? ( kmax - kmin ) : 1 );
    }

    if( MBVERTEX == type && ( is_periodic && ( is_periodic[0] || is_periodic[1] ) ) ) return MB_FAILURE;

    // Get a start handle
    SequenceData* data = 0;
    EntityID data_size = 0;
    handle             = sequence_start_handle( type, num_ent, -1, start_id_hint, data, data_size );

    if( !handle ) return MB_MEMORY_ALLOCATION_FAILED;
    assert( !data );

    switch( type )
    {
        case MBVERTEX:
            data     = new ScdVertexData( handle, imin, jmin, kmin, imax, jmax, kmax );
            sequence = new VertexSequence( handle, data->size(), data );
            break;
        case MBEDGE:
        case MBQUAD:
        case MBHEX:
            sequence = new StructuredElementSeq( handle, imin, jmin, kmin, imax, jmax, kmax, is_periodic );
            break;
        default:
            return MB_TYPE_OUT_OF_RANGE;
    }

    ErrorCode result = typeData[type].insert_sequence( sequence );
    if( MB_SUCCESS != result )
    {
        data = sequence->data();
        delete sequence;
        delete data;
        return result;
    }

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::create_scd_sequence	(	const HomCoord &	coord_min,
		const HomCoord &	coord_max,
		EntityType	type,
		EntityID	start_id_hint,
		EntityHandle &	first_handle_out,
		EntitySequence *&	sequence_out,
		int *	is_periodic = NULL
	)

Create structured mesh

Definition at line 653 of file SequenceManager.cpp.

References create_scd_sequence(), moab::HomCoord::i(), moab::HomCoord::j(), and moab::HomCoord::k().

{
    return create_scd_sequence( coord_min.i(), coord_min.j(), coord_min.k(), coord_max.i(), coord_max.j(),
                                coord_max.k(), type, start_id_hint, first_handle_out, sequence_out, is_periodic );
}

ErrorCode moab::SequenceManager::create_sweep_sequence	(	int	imin,
		int	jmin,
		int	kmin,
		int	imax,
		int	jmax,
		int	kmax,
		int *	Cq,
		EntityType	type,
		EntityID	start_id_hint,
		EntityHandle &	first_handle_out,
		EntitySequence *&	sequence_out
	)

Create swept mesh

Definition at line 665 of file SequenceManager.cpp.

References moab::EntitySequence::data(), moab::CN::Dimension(), ErrorCode, moab::TypeSequenceManager::insert_sequence(), MB_MEMORY_ALLOCATION_FAILED, MB_SUCCESS, MB_TYPE_OUT_OF_RANGE, MBEDGE, MBHEX, MBQUAD, MBVERTEX, sequence_start_handle(), moab::SequenceData::size(), and typeData.

Referenced by create_sweep_sequence().

{
    int this_dim = CN::Dimension( type );

    assert( ( this_dim < 3 || kmax > kmin ) && ( this_dim < 2 || jmax > jmin ) && ( this_dim < 1 || imax > imin ) );

    EntityID num_ent;
    if( MBVERTEX == type )
        num_ent = (EntityID)( imax - imin + 1 ) * (EntityID)( jmax - jmin + 1 ) * (EntityID)( kmax - kmin + 1 );
    else
    {
        num_ent = ( imax - imin ) * ( this_dim >= 2 ? ( jmax - jmin ) : 1 ) * ( this_dim >= 3 ? ( kmax - kmin ) : 1 );
    }

    // Get a start handle
    SequenceData* data = 0;
    EntityID data_size = 0;
    handle             = sequence_start_handle( type, num_ent, -1, start_id_hint, data, data_size );

    if( !handle ) return MB_MEMORY_ALLOCATION_FAILED;
    assert( !data );

    switch( type )
    {
        case MBVERTEX:
            data     = new ScdVertexData( handle, imin, jmin, kmin, imax, jmax, kmax );
            sequence = new VertexSequence( handle, data->size(), data );
            break;
        case MBEDGE:
        case MBQUAD:
        case MBHEX:
            sequence = new SweptElementSeq( handle, imin, jmin, kmin, imax, jmax, kmax, Cq );
            break;
        default:
            return MB_TYPE_OUT_OF_RANGE;
    }

    ErrorCode result = typeData[type].insert_sequence( sequence );
    if( MB_SUCCESS != result )
    {
        data = sequence->data();
        delete sequence;
        delete data;
        return result;
    }

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::create_sweep_sequence	(	const HomCoord &	coord_min,
		const HomCoord &	coord_max,
		int *	Cq,
		EntityType	type,
		EntityID	start_id_hint,
		EntityHandle &	first_handle_out,
		EntitySequence *&	sequence_out
	)

Create swept mesh

Definition at line 724 of file SequenceManager.cpp.

References create_sweep_sequence(), moab::HomCoord::i(), moab::HomCoord::j(), and moab::HomCoord::k().

{
    return create_sweep_sequence( coord_min.i(), coord_min.j(), coord_min.k(), coord_max.i(), coord_max.j(),
                                  coord_max.k(), Cq, type, start_id_hint, first_handle_out, sequence_out );
}

ErrorCode moab::SequenceManager::create_vertex	(	const double	coords[3],
		EntityHandle &	handle_out
	)

Allocate a vertex (possibly in an existing sequence) and assign it the passed coordinate values.

Definition at line 168 of file SequenceManager.cpp.

References moab::CREATE_HANDLE(), moab::EntitySequence::data(), DEFAULT_VERTEX_SEQUENCE_SIZE, moab::EntitySequence::end_handle(), ErrorCode, moab::TypeSequenceManager::find_free_handle(), moab::TypeSequenceManager::find_free_sequence(), moab::TypeSequenceManager::insert_sequence(), MB_END_ID, MB_START_ID, MB_SUCCESS, MBVERTEX, moab::TypeSequenceManager::notify_appended(), moab::TypeSequenceManager::notify_prepended(), moab::VertexSequence::push_back(), moab::VertexSequence::push_front(), moab::VertexSequence::set_coordinates(), moab::EntitySequence::start_handle(), and typeData.

{
    const EntityHandle start = CREATE_HANDLE( MBVERTEX, MB_START_ID );
    const EntityHandle end   = CREATE_HANDLE( MBVERTEX, MB_END_ID );
    bool append;
    TypeSequenceManager::iterator seq = typeData[MBVERTEX].find_free_handle( start, end, append );
    VertexSequence* vseq;

    if( seq == typeData[MBVERTEX].end() )
    {
        SequenceData* seq_data = 0;
        EntityID seq_data_size = 0;
        handle =
            typeData[MBVERTEX].find_free_sequence( DEFAULT_VERTEX_SEQUENCE_SIZE, start, end, seq_data, seq_data_size );
        if( !handle ) return MB_FAILURE;

        if( seq_data )
            vseq = new VertexSequence( handle, 1, seq_data );
        else
            vseq = new VertexSequence( handle, 1, DEFAULT_VERTEX_SEQUENCE_SIZE );

        ErrorCode rval = typeData[MBVERTEX].insert_sequence( vseq );
        if( MB_SUCCESS != rval )
        {
            SequenceData* vdata = vseq->data();
            delete vseq;
            if( !seq_data ) delete vdata;

            return rval;
        }
    }
    else
    {
        vseq = reinterpret_cast< VertexSequence* >( *seq );
        if( append )
        {
            vseq->push_back( 1 );
            handle = vseq->end_handle();
            typeData[MBVERTEX].notify_appended( seq );
        }
        else
        {
            vseq->push_front( 1 );
            handle = vseq->start_handle();
            typeData[MBVERTEX].notify_prepended( seq );
        }
    }

    return vseq->set_coordinates( handle, coords );
}

EntityID moab::SequenceManager::default_poly_sequence_size

(

int

entity_connectivity_length

)

[static]

Get default size of POLYGON and POLYHEDRON SequenceData.

Definition at line 31 of file SequenceManager.cpp.

References DEFAULT_POLY_SEQUENCE_SIZE.

Referenced by create_element(), and create_entity_sequence().

{
    return std::max( DEFAULT_POLY_SEQUENCE_SIZE / conn_len, (EntityID)1 );
}

ErrorCode moab::SequenceManager::delete_entities	(	Error *	error_handler,
		const Range &	entities
	)

Delete entities

Definition at line 138 of file SequenceManager.cpp.

References check_valid_entities(), moab::Range::const_pair_begin(), moab::Range::const_pair_end(), moab::CREATE_HANDLE(), moab::TypeSequenceManager::erase(), ErrorCode, MB_SUCCESS, split, moab::TYPE_FROM_HANDLE(), and typeData.

{
    ErrorCode rval = check_valid_entities( NULL, entities );
    if( MB_SUCCESS != rval ) return rval;

    ErrorCode result = MB_SUCCESS;
    Range::const_pair_iterator i;
    for( i = entities.const_pair_begin(); i != entities.const_pair_end(); ++i )
    {
        const EntityType type1 = TYPE_FROM_HANDLE( i->first );
        const EntityType type2 = TYPE_FROM_HANDLE( i->second );
        if( type1 == type2 )
        {
            rval = typeData[type1].erase( NULL, i->first, i->second );
            if( MB_SUCCESS != rval ) return result = rval;
        }
        else
        {
            int junk;
            EntityHandle split = CREATE_HANDLE( type2, 0, junk );
            rval               = typeData[type1].erase( NULL, i->first, split - 1 );
            if( MB_SUCCESS != rval ) return result = rval;
            rval = typeData[type2].erase( NULL, split, i->second );
            if( MB_SUCCESS != rval ) return result = rval;
        }
    }

    return result;
}

ErrorCode moab::SequenceManager::delete_entity	(	Error *	error_handler,
		EntityHandle	entity
	)

Delete an entity. Deletes sequence if only contained entity.

Definition at line 133 of file SequenceManager.cpp.

References moab::TypeSequenceManager::erase(), moab::TYPE_FROM_HANDLE(), and typeData.

Referenced by mb_range_seq_intersect_test().

{
    return typeData[TYPE_FROM_HANDLE( entity )].erase( NULL, entity );
}

TypeSequenceManager& moab::SequenceManager::entity_map

(

EntityType

type

)

[inline]

Get data for a specific EntityType

Definition at line 246 of file SequenceManager.hpp.

References typeData.

Referenced by moab::DenseTag::find_entities_with_value(), moab::VarLenDenseTag::find_entities_with_value(), moab::RangeSeqIntersectIter::find_invalid_range(), moab::WriteUtil::get_element_connect(), moab::ReorderTool::get_entities(), moab::AEntityFactory::get_memory_use(), moab::DenseTag::get_memory_use(), moab::VarLenDenseTag::get_memory_use(), moab::WriteUtil::get_node_coords(), get_number_sequences(), moab::get_tagged(), moab::DenseTag::get_tagged_entities(), moab::ReorderTool::handle_order_from_int_tag(), moab::operator<<(), release_tag_array(), moab::ReorderTool::reorder_entities(), and moab::AEntityFactory::~AEntityFactory().

    {
        return typeData[type];
    }

const TypeSequenceManager& moab::SequenceManager::entity_map

(

EntityType

type

)

const [inline]

Get data for a specific EntityType

Definition at line 252 of file SequenceManager.hpp.

References typeData.

    {
        return typeData[type];
    }

ErrorCode moab::SequenceManager::find	(	EntityHandle	handle,
		EntitySequence *&	sequence_out
	)		[inline]

Find entity sequence containing specified handle.

Returns:

MB_SUCCESS or MB_ENTITY_NOT_FOUND

Definition at line 27 of file SequenceManager.hpp.

References moab::TypeSequenceManager::find(), moab::TYPE_FROM_HANDLE(), and typeData.

Referenced by moab::HigherOrderFactory::add_mid_edge_nodes(), moab::HigherOrderFactory::add_mid_face_nodes(), moab::HigherOrderFactory::add_mid_volume_nodes(), moab::HigherOrderFactory::convert(), moab::AEntityFactory::get_adjacency_ptr(), moab::VarLenDenseTag::get_array(), moab::DenseTag::get_array_private(), moab::WriteUtil::get_entity_list_pointers(), moab::get_mesh_set(), moab::MeshSetSequence::get_parent_child_meshsets(), moab::ParallelComm::pack_entities(), moab::MeshSetSequence::recursive_get_sets(), reserve_tag_array(), moab::AEntityFactory::set_adjacency_ptr(), and moab::RangeSeqIntersectIter::update_entity_sequence().

    {
        return typeData[TYPE_FROM_HANDLE( handle )].find( handle, sequence_out );
    }

ErrorCode moab::SequenceManager::find	(	EntityHandle	handle,
		const EntitySequence *&	sequence_out
	)		const [inline]

Find entity sequence containing specified handle.

Returns:

MB_SUCCESS or MB_ENTITY_NOT_FOUND

Definition at line 35 of file SequenceManager.hpp.

References moab::TypeSequenceManager::find(), moab::TYPE_FROM_HANDLE(), and typeData.

    {
        return typeData[TYPE_FROM_HANDLE( handle )].find( handle, sequence_out );
    }

void moab::SequenceManager::get_entities	(	EntityType	type,
		Range &	entities_out
	)		const [inline]

Get all entities of a given EntityType, return all entities if type == MBMAXTYPE

Definition at line 42 of file SequenceManager.hpp.

References moab::TypeSequenceManager::get_entities(), MBMAXTYPE, and typeData.

Referenced by get_entities(), and moab::VarLenDenseTag::release_all_data().

    {
        if( type == MBMAXTYPE )
            get_entities( entities_out );
        else
            typeData[type].get_entities( entities_out );
    }

void moab::SequenceManager::get_entities

(

Range &

entities_out

)

const

Definition at line 57 of file SequenceManager.cpp.

References get_entities(), MBENTITYSET, MBVERTEX, t, and typeData.

{
    for( EntityType t = MBENTITYSET; t >= MBVERTEX; --t )
        typeData[t].get_entities( entities_out );
}

void moab::SequenceManager::get_entities	(	EntityType	type,
		std::vector< EntityHandle > &	entities_out
	)		const [inline]

Get all entities of a given EntityType, return all entities if type == MBMAXTYPE

Definition at line 54 of file SequenceManager.hpp.

References get_entities(), moab::TypeSequenceManager::get_entities(), MBMAXTYPE, and typeData.

    {
        if( type == MBMAXTYPE )
            get_entities( entities_out );
        else
            typeData[type].get_entities( entities_out );
    }

void moab::SequenceManager::get_entities

(

std::vector< EntityHandle > &

entities_out

)

const

Definition at line 63 of file SequenceManager.cpp.

References get_entities(), MBMAXTYPE, MBVERTEX, t, and typeData.

{
    for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
        typeData[t].get_entities( entities_out );
}

const EntitySequence* moab::SequenceManager::get_last_accessed_sequence

(

EntityType

type

)

const [inline]

Get most recently accessed sequence for a given type

Definition at line 74 of file SequenceManager.hpp.

References moab::TypeSequenceManager::get_last_accessed(), and typeData.

    {
        return typeData[type].get_last_accessed();
    }

void moab::SequenceManager::get_memory_use	(	unsigned long long &	total_entity_storage,
		unsigned long long &	total_storage
	)		const

Definition at line 768 of file SequenceManager.cpp.

References MBMAXTYPE, and MBVERTEX.

{
    total_entity_storage = 0;
    total_storage        = 0;
    unsigned long long temp_entity, temp_total;
    for( EntityType i = MBVERTEX; i < MBMAXTYPE; ++i )
    {
        temp_entity = temp_total = 0;
        get_memory_use( i, temp_entity, temp_total );
        total_entity_storage += temp_entity;
        total_storage += temp_total;
    }
}

void moab::SequenceManager::get_memory_use	(	EntityType	type,
		unsigned long long &	total_entity_storage,
		unsigned long long &	total_storage
	)		const

Definition at line 784 of file SequenceManager.cpp.

References moab::TypeSequenceManager::get_memory_use(), and typeData.

{
    typeData[type].get_memory_use( total_entity_storage, total_storage );
}

void moab::SequenceManager::get_memory_use	(	const Range &	entities,
		unsigned long long &	total_entity_storage,
		unsigned long long &	total_amortized_storage
	)		const

Definition at line 791 of file SequenceManager.cpp.

References moab::Range::const_pair_begin(), moab::Range::const_pair_end(), moab::CREATE_HANDLE(), moab::TypeSequenceManager::get_memory_use(), MB_END_ID, MB_START_ID, moab::TYPE_FROM_HANDLE(), and typeData.

{
    total_entity_storage    = 0;
    total_amortized_storage = 0;
    unsigned long long temp_entity, temp_total;
    Range::const_pair_iterator i;
    for( i = entities.const_pair_begin(); i != entities.const_pair_end(); ++i )
    {
        const EntityType t1 = TYPE_FROM_HANDLE( i->first );
        const EntityType t2 = TYPE_FROM_HANDLE( i->second );
        if( t1 == t2 )
        {
            temp_entity = temp_total = 0;
            typeData[t1].get_memory_use( i->first, i->second, temp_entity, temp_total );
            total_entity_storage += temp_entity;
            total_amortized_storage += temp_total;
        }
        else
        {
            int junk;

            temp_entity = temp_total = 0;
            typeData[t1].get_memory_use( i->first, CREATE_HANDLE( t1, MB_END_ID, junk ), temp_entity, temp_total );
            total_entity_storage += temp_entity;
            total_amortized_storage += temp_total;

            temp_entity = temp_total = 0;
            typeData[t2].get_memory_use( CREATE_HANDLE( t2, MB_START_ID, junk ), i->second, temp_entity, temp_total );
            total_entity_storage += temp_entity;
            total_amortized_storage += temp_total;
        }
    }
}

EntityID moab::SequenceManager::get_number_entities

(

EntityType

type

)

const [inline]

Count entities of a given EntityType

Definition at line 65 of file SequenceManager.hpp.

References get_number_entities(), moab::TypeSequenceManager::get_number_entities(), MBMAXTYPE, and typeData.

    {
        return type == MBMAXTYPE ? get_number_entities() : typeData[type].get_number_entities();
    }

EntityID moab::SequenceManager::get_number_entities

(

)

const

Count entities of a given EntityType

Definition at line 69 of file SequenceManager.cpp.

References MBMAXTYPE, MBVERTEX, moab::sum(), t, and typeData.

Referenced by get_number_entities().

{
    EntityID sum = 0;
    for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
        sum += typeData[t].get_number_entities();

    return sum;
}

double moab::SequenceManager::get_sequence_multiplier

(

)

const [inline]

Interface to control memory allocation for sequences Provide a factor that controls the size of the sequence that gets allocated. This is typically useful in the parallel setting when a-priori, the number of ghost entities and the memory required for them within the same sequence as the owned entities are unknown. The default factor is 1.0 but this can be appropriately updated at runtime so that we do not have broken sequences.

Definition at line 296 of file SequenceManager.hpp.

References sequence_multiplier.

    {
        return sequence_multiplier;
    }

EntityID moab::SequenceManager::new_sequence_size	(	EntityHandle	start_handle,
		EntityID	requested_size,
		int	sequence_size
	)		const

Size to allocate for new SquenceData THIS FUNCTION SHOULD ONLY BE CALLED WHEN ALLOCATING FROM ReadUtil IN BULK (since it will allocate lesser of requested_size and default_size) If sequence_size != -1, will try to allocate that, unless there isn't available space.

Definition at line 430 of file SequenceManager.cpp.

References moab::TypeSequenceManager::last_free_handle(), sequence_multiplier, moab::TYPE_FROM_HANDLE(), and typeData.

Referenced by create_entity_sequence().

{

    requested_size = (EntityID)( this->sequence_multiplier * requested_size );

    if( sequence_size < (int)requested_size ) return requested_size;

    EntityHandle last = typeData[TYPE_FROM_HANDLE( start )].last_free_handle( start );
    if( !last )
    {
        assert( false );
        return 0;
    }

    EntityID available_size = last - start + 1;
    if( sequence_size < available_size )
        return sequence_size;
    else
        return available_size;
}

ErrorCode moab::SequenceManager::release_tag_array	(	Error *	error_handler,
		int	id,
		bool	release_id
	)

Release any storage assocociated with a tag ID, and optionally, release the reserved tag ID.

Definition at line 849 of file SequenceManager.cpp.

References moab::TypeSequenceManager::begin(), moab::TypeSequenceManager::end(), entity_map(), MB_SUCCESS, MB_TAG_NOT_FOUND, MBENTITYSET, MBVERTEX, t, tagSizes, and moab::UNUSED_SIZE.

Referenced by moab::DenseTag::release_all_data(), moab::VarLenDenseTag::release_all_data(), and ~SequenceManager().

{
    if( (unsigned)index >= tagSizes.size() || UNUSED_SIZE == tagSizes[index] )
    {
        // MB_TAG_NOT_FOUND could be a non-error condition, do not call MB_SET_ERR on it
#if 0
    fprintf(stderr, "[Warning]: Invalid dense tag index: %d\n", index);
#endif
        return MB_TAG_NOT_FOUND;
    }

    for( EntityType t = MBVERTEX; t <= MBENTITYSET; ++t )
    {
        TypeSequenceManager& seqs = entity_map( t );
        for( TypeSequenceManager::iterator i = seqs.begin(); i != seqs.end(); ++i )
            ( *i )->data()->release_tag_data( index, tagSizes[index] );
    }

    if( release_id ) tagSizes[index] = UNUSED_SIZE;

    return MB_SUCCESS;
}

ErrorCode moab::SequenceManager::replace_subsequence

(

EntitySequence *

new_seq

)

Replace subset of existing sequence with new sequence (splits existing sequence)

Used for converting number of nodes for fixed-connectivity-length elements. Input sequence must be a non-strict subset of an existing sequence. Existing sequence will be removed, modified, or split into two prevent it from overlapping the new sequence.

Definition at line 762 of file SequenceManager.cpp.

References moab::TypeSequenceManager::replace_subsequence(), moab::EntitySequence::start_handle(), tagSizes, moab::TYPE_FROM_HANDLE(), and typeData.

Referenced by moab::HigherOrderFactory::convert_sequence().

{
    const EntityType type = TYPE_FROM_HANDLE( new_seq->start_handle() );
    return typeData[type].replace_subsequence( new_seq, &tagSizes[0], tagSizes.size() );
}

ErrorCode moab::SequenceManager::reserve_tag_array	(	Error *	error_handler,
		int	tag_size,
		int &	array_id_out
	)

Allocate a tag ID

Parameters:

tag_size

The size of the tag value for each entity

Definition at line 827 of file SequenceManager.cpp.

References find(), MB_INVALID_SIZE, MB_SET_ERR, MB_SUCCESS, MB_VARIABLE_LENGTH, size, tagSizes, and moab::UNUSED_SIZE.

Referenced by moab::DenseTag::create_tag(), and moab::VarLenDenseTag::create_tag().

{
    if( size < 1 && size != MB_VARIABLE_LENGTH )
    {
        MB_SET_ERR( MB_INVALID_SIZE, "Invalid tag size: " << size );
    }

    std::vector< int >::iterator i = std::find( tagSizes.begin(), tagSizes.end(), UNUSED_SIZE );
    if( i == tagSizes.end() )
    {
        index = tagSizes.size();
        tagSizes.push_back( size );
    }
    else
    {
        index = i - tagSizes.begin();
        *i    = size;
    }

    return MB_SUCCESS;
}

EntityHandle moab::SequenceManager::sequence_start_handle	(	EntityType	type,
		EntityID	entity_count,
		int	values_per_entity,
		EntityID	start_id_hint,
		SequenceData *&	data_out,
		EntityID &	data_size
	)		[private]

Get range of handles in which to create an entity sequence.

Get range of handles in whcih to place a new entity sequence.

Parameters:

type	The EntityType for the contents of the sequence
entity_count	The number of entities in the range
values_per_entity	Vertices per element, zero for other types
start_id_hint	Preferred id of first handle
processor_rank	MPI processor ID
data_out	Output: Either NULL or an existing SequenceData with a sufficiently large block to accomodate the handle range.

Returns:

zero if no available handle range, start handle otherwise.

Definition at line 410 of file SequenceManager.cpp.

References moab::CREATE_HANDLE(), moab::TypeSequenceManager::find_free_sequence(), moab::TypeSequenceManager::is_free_sequence(), MB_END_ID, MB_START_ID, and typeData.

Referenced by create_entity_sequence(), create_meshset_sequence(), create_scd_sequence(), and create_sweep_sequence().

{
    TypeSequenceManager& tsm = typeData[type];
    data                     = 0;
    EntityHandle handle      = CREATE_HANDLE( type, start );
    if( start < MB_START_ID || !tsm.is_free_sequence( handle, count, data, size ) )
    {
        EntityHandle pstart = CREATE_HANDLE( type, MB_START_ID );
        EntityHandle pend   = CREATE_HANDLE( type, MB_END_ID );
        handle              = tsm.find_free_sequence( count, pstart, pend, data, data_size, size );
    }

    return handle;
}

void moab::SequenceManager::set_sequence_multiplier

(

double

factor

)

[inline]

Interface to control memory allocation for sequences Provide a factor that controls the size of the sequence that gets allocated. This is typically useful in the parallel setting when a-priori, the number of ghost entities and the memory required for them within the same sequence as the owned entities are unknown. The default factor is 1.0 but this can be appropriately updated at runtime so that we do not have broken sequences.

Parameters:

meshset

User specified multiplier (should be greater than 1.0)

Definition at line 310 of file SequenceManager.hpp.

References sequence_multiplier.

    {
        sequence_multiplier = factor;
    }

void moab::SequenceManager::trim_sequence_block	(	EntityHandle	start_handle,
		EntityHandle &	end_handle_in_out,
		unsigned	maximum_sequence_size
	)		[private]

Utility function for allocate_mesh_set (and similar)

Given a block of available handles, determine the non-strict subset at which to create a new EntitySequence.

Definition at line 401 of file SequenceManager.cpp.

Referenced by allocate_mesh_set().

{
    assert( end_handle >= start_handle );
    assert( (int)max_size > 0 );  // Cast to int also prohibits some ridiculously large values

    // If input range is larger than preferred size, trim it
    if( end_handle - start_handle >= max_size ) end_handle = start_handle + max_size - 1;
}

---

Member Data Documentation

const EntityID moab::SequenceManager::DEFAULT_ELEMENT_SEQUENCE_SIZE = DEFAULT_VERTEX_SEQUENCE_SIZE [static]

Default allocation size for elements.

Definition at line 319 of file SequenceManager.hpp.

Referenced by create_element(), and moab::Tqdcfr::read_elements().

const EntityID moab::SequenceManager::DEFAULT_MESHSET_SEQUENCE_SIZE = DEFAULT_VERTEX_SEQUENCE_SIZE [static]

Default allocation size for meshsets.

Definition at line 325 of file SequenceManager.hpp.

Referenced by allocate_mesh_set(), and create_mesh_set().

const EntityID moab::SequenceManager::DEFAULT_POLY_SEQUENCE_SIZE = 16 * 1024 [static]

Default allocation size for poly's.

Definition at line 322 of file SequenceManager.hpp.

Referenced by default_poly_sequence_size().

const EntityID moab::SequenceManager::DEFAULT_VERTEX_SEQUENCE_SIZE = 16 * 1024 [static]

Default allocation size for vertices.

Definition at line 316 of file SequenceManager.hpp.

Referenced by create_vertex(), and moab::Tqdcfr::read_nodes().

double moab::SequenceManager::sequence_multiplier [private]

The over-allocation factor for entities in a sequence (strictly >= 1.0)

Definition at line 362 of file SequenceManager.hpp.

Referenced by clear(), get_sequence_multiplier(), new_sequence_size(), and set_sequence_multiplier().

std::vector< int > moab::SequenceManager::tagSizes [private]

Definition at line 359 of file SequenceManager.hpp.

Referenced by release_tag_array(), replace_subsequence(), reserve_tag_array(), and ~SequenceManager().

TypeSequenceManager moab::SequenceManager::typeData[MBMAXTYPE] [private]

Definition at line 357 of file SequenceManager.hpp.

Referenced by allocate_mesh_set(), check_valid_entities(), clear(), create_element(), create_entity_sequence(), create_mesh_set(), create_meshset_sequence(), create_scd_sequence(), create_sweep_sequence(), create_vertex(), delete_entities(), delete_entity(), entity_map(), find(), get_entities(), get_last_accessed_sequence(), get_memory_use(), get_number_entities(), new_sequence_size(), replace_subsequence(), and sequence_start_handle().

List of all members.

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The documentation for this class was generated from the following files:

• SequenceManager.hpp
• SequenceManager.cpp