MOAB: Mesh Oriented datABase  (version 5.3.1)
moab::Tqdcfr Class Reference

#include <Tqdcfr.hpp>

+ Inheritance diagram for moab::Tqdcfr:
+ Collaboration diagram for moab::Tqdcfr:

Classes

struct  AcisRecord
class  BlockHeader
class  FEModelHeader
class  FileTOC
class  GeomHeader
class  GroupHeader
class  MetaDataContainer
class  ModelEntry
class  NodesetHeader
class  SidesetHeader

Public Types

enum  {
  aBODY, LUMP, SHELL, FACE,
  LOOP, COEDGE, aEDGE, aVERTEX,
  ATTRIB, UNKNOWN
}
enum  {
  mesh, acist, acisb, facet,
  exodusmesh
}

Public Member Functions

void FSEEK (unsigned offset)
void FREADI (unsigned num_ents)
void FREADD (unsigned num_ents)
void FREADC (unsigned num_ents)
void FREADIA (unsigned num_ents, unsigned int *array)
void FREADDA (unsigned num_ents, double *array)
void FREADCA (unsigned num_ents, char *arrat)
void CONVERT_TO_INTS (unsigned int num_ents)
 ~Tqdcfr ()
ErrorCode load_file (const char *file_name, const EntityHandle *file_set, const FileOptions &opts, const SubsetList *subset_list=0, const Tag *file_id_tag=0)
 Load mesh from a file.
ErrorCode read_tag_values (const char *file_name, const char *tag_name, const FileOptions &opts, std::vector< int > &tag_values_out, const SubsetList *subset_list=0)
 Read tag values from a file.
ErrorCode read_nodeset (const unsigned int nsindex, ModelEntry *model, NodesetHeader *nodeseth)
ErrorCode read_sideset (const unsigned int ssindex, const double data_version, ModelEntry *model, SidesetHeader *sideseth)
ErrorCode read_block (const unsigned int blindex, const double data_version, ModelEntry *model, BlockHeader *blockh)
ErrorCode read_group (const unsigned int gr_index, ModelEntry *model, GroupHeader *grouph)
ErrorCode read_nodes (const unsigned int gindex, ModelEntry *model, GeomHeader *entity)
ErrorCode read_elements (ModelEntry *model, GeomHeader *entity)
ErrorCode read_file_header ()
ErrorCode read_model_entries ()
int find_model (const unsigned int model_type)
ErrorCode read_meta_data (const unsigned int metadata_offset, MetaDataContainer &mc)
ErrorCode read_md_string (std::string &name)
EntityType type_from_cub_type (const unsigned int cub_type, const unsigned int nodes_per_elem)
void check_contiguous (const unsigned int num_ents, int &contig, unsigned int &min_id, unsigned int &max_id)
 Tqdcfr (Interface *impl)
ErrorCode create_set (EntityHandle &h, unsigned int flags=MESHSET_SET)

Static Public Member Functions

static ReaderIfacefactory (Interface *)

Public Attributes

ReadUtilIfacereadUtilIface
InterfacemdbImpl
FILE * cubFile
FileTOC fileTOC
std::vector< ModelEntrymodelEntries
MetaDataContainer modelMetaData
long currVHandleOffset
Range beforeEnts
long currElementIdOffset [MBMAXTYPE]
Tag globalIdTag
Tag cubIdTag
Tag geomTag
Tag uniqueIdTag
Tag blockTag
Tag nsTag
Tag ssTag
Tag attribVectorTag
Tag entityNameTag
Tag categoryTag
Tag hasMidNodesTag
std::map< int, EntityHandleuidSetMap
std::map< int, EntityHandlegidSetMap [6]
bool swapForEndianness
std::vector< unsigned int > uint_buf
int * int_buf
std::vector< double > dbl_buf
std::vector< char > char_buf

Private Types

enum  {
  GROUP = 0, BODY, VOLUME, SURFACE,
  CURVE, VERTEX, HEX, TET,
  PYRAMID, QUAD, TRI, EDGE,
  NODE
}
enum  {
  SPHERE_EXO = 0, BAR, BAR2, BAR3,
  BEAM, BEAM2, BEAM3, TRUSS,
  TRUSS2, TRUSS3, SPRING, TRIthree,
  TRI3, TRI6, TRI7, TRISHELL,
  TRISHELL3, TRISHELL6, TRISHELL7, SHEL,
  SHELL4, SHELL8, SHELL9, QUADfour,
  QUAD4, QUAD5, QUAD8, QUAD9,
  TETRAfour, TETRA4, TETRA8, TETRA10,
  TETRA14, PYRAMIDfive, PYRAMID5, PYRAMID8,
  PYRAMID13, PYRAMID18, HEXeight, HEX8,
  HEX9, HEX20, HEX27, HEXSHELL,
  INVALID_ELEMENT_TYPE
}

Private Member Functions

ErrorCode convert_nodesets_sidesets ()
ErrorCode read_acis_records (const char *sat_file_name=0)
ErrorCode parse_acis_attribs (const unsigned int entity_rec_num, std::vector< AcisRecord > &records)
ErrorCode interpret_acis_records (std::vector< AcisRecord > &records)
ErrorCode reset_record (AcisRecord &this_record)
ErrorCode process_record (AcisRecord &this_record)
ErrorCode get_entities (const unsigned int *mem_types, int *id_buf, const unsigned int id_buf_size, const bool is_group, std::vector< EntityHandle > &entities)
ErrorCode get_entities (const unsigned int this_type, int *id_buf, const unsigned int id_buf_size, std::vector< EntityHandle > &entities, std::vector< EntityHandle > &excl_entities)
 get entities specified by type and ids, append to entities
ErrorCode get_ref_entities (const unsigned int this_type, int *id_buf, const unsigned id_buf_size, std::vector< EntityHandle > &entities)
 get ref entity sets with specified type and ids
ErrorCode get_mesh_entities (const unsigned int this_type, int *id_buf, const unsigned id_buf_size, std::vector< EntityHandle > &entities, std::vector< EntityHandle > &excl_entities)
 get mesh entities with specified type and ids
ErrorCode process_sideset_10 (const int this_type, const int num_ents, const int sense_size, std::vector< EntityHandle > &ss_entities, Tqdcfr::SidesetHeader *sideseth)
ErrorCode process_sideset_11 (std::vector< EntityHandle > &ss_entities, int num_wrts, Tqdcfr::SidesetHeader *sideseth)
ErrorCode put_into_set (EntityHandle set_handle, std::vector< EntityHandle > &entities, std::vector< EntityHandle > &excl_entities)
ErrorCode get_names (MetaDataContainer &md, unsigned int set_index, EntityHandle seth)

Private Attributes

EntityHandle mFileSet
bool printedSeqWarning
bool printedElemWarning
FILE * acisDumpFile
std::vector< EntityHandle > * cubMOABVertexMap

Static Private Attributes

static const char geom_categories [][CATEGORY_TAG_SIZE] = { "Vertex\0", "Curve\0", "Surface\0", "Volume\0" }
static const EntityType group_type_to_mb_type []
static const EntityType block_type_to_mb_type []
static const int cub_elem_num_verts []
static const int cub_elem_num_verts_len = sizeof( cub_elem_num_verts ) / sizeof( cub_elem_num_verts[0] )
static const EntityType mp_type_to_mb_type []
 mapping from mesh packet type to moab type

Detailed Description

Definition at line 45 of file Tqdcfr.hpp.


Member Enumeration Documentation

anonymous enum
Enumerator:
aBODY 
LUMP 
SHELL 
FACE 
LOOP 
COEDGE 
aEDGE 
aVERTEX 
ATTRIB 
UNKNOWN 

Definition at line 237 of file Tqdcfr.hpp.

anonymous enum
Enumerator:
mesh 
acist 
acisb 
facet 
exodusmesh 

Definition at line 306 of file Tqdcfr.hpp.

anonymous enum [private]
Enumerator:
GROUP 
BODY 
VOLUME 
SURFACE 
CURVE 
VERTEX 
HEX 
TET 
PYRAMID 
QUAD 
TRI 
EDGE 
NODE 

Definition at line 347 of file Tqdcfr.hpp.

anonymous enum [private]
Enumerator:
SPHERE_EXO 
BAR 
BAR2 
BAR3 
BEAM 
BEAM2 
BEAM3 
TRUSS 
TRUSS2 
TRUSS3 
SPRING 
TRIthree 
TRI3 
TRI6 
TRI7 
TRISHELL 
TRISHELL3 
TRISHELL6 
TRISHELL7 
SHEL 
SHELL4 
SHELL8 
SHELL9 
QUADfour 
QUAD4 
QUAD5 
QUAD8 
QUAD9 
TETRAfour 
TETRA4 
TETRA8 
TETRA10 
TETRA14 
PYRAMIDfive 
PYRAMID5 
PYRAMID8 
PYRAMID13 
PYRAMID18 
HEXeight 
HEX8 
HEX9 
HEX20 
HEX27 
HEXSHELL 
INVALID_ELEMENT_TYPE 

Definition at line 365 of file Tqdcfr.hpp.


Constructor & Destructor Documentation

Definition at line 261 of file Tqdcfr.cpp.

References attribVectorTag, moab::Range::begin(), cubMOABVertexMap, moab::Range::end(), ErrorCode, moab::Interface::get_entities_by_type(), MB_SUCCESS, MBENTITYSET, mdbImpl, readUtilIface, moab::Interface::release_interface(), moab::Interface::tag_delete(), and moab::Interface::tag_get_data().

{
    mdbImpl->release_interface( readUtilIface );

    if( NULL != cubMOABVertexMap ) delete cubMOABVertexMap;
    if( attribVectorTag )
    {
        // get all sets, and release the string vectors
        Range allSets;  // although only geom sets should have these attributes
        // can't error in a destructor
        ErrorCode rval = mdbImpl->get_entities_by_type( 0, MBENTITYSET, allSets );
        if( rval != MB_SUCCESS ) std::cerr << "WARNING: Could not get_entities_by_type" << std::endl;
        for( Range::iterator sit = allSets.begin(); sit != allSets.end(); ++sit )
        {
            EntityHandle gset = *sit;
            std::vector< std::string >* dum_vec;
            // can't error in a destructor
            rval = mdbImpl->tag_get_data( attribVectorTag, &gset, 1, &dum_vec );
            if( rval != MB_SUCCESS ) std::cerr << "WARNING: Could not tag_get_data" << std::endl;
            if( NULL != dum_vec ) delete dum_vec;  //
        }
        mdbImpl->tag_delete( attribVectorTag );
        attribVectorTag = NULL;
    }
}

Definition at line 232 of file Tqdcfr.cpp.

References blockTag, cubMOABVertexMap, currElementIdOffset, currVHandleOffset, DIRICHLET_SET_TAG_NAME, entityNameTag, ErrorCode, MATERIAL_SET_TAG_NAME, MB_CHK_SET_ERR_RET, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_INTEGER, MB_TYPE_OPAQUE, MBMAXTYPE, MBVERTEX, mdbImpl, NAME_TAG_NAME, NAME_TAG_SIZE, NEUMANN_SET_TAG_NAME, nsTag, moab::Interface::query_interface(), readUtilIface, ssTag, and moab::Interface::tag_get_handle().

Referenced by factory().

    : cubFile( NULL ), globalIdTag( 0 ), cubIdTag( 0 ), geomTag( 0 ), uniqueIdTag( 0 ), blockTag( 0 ), nsTag( 0 ),
      ssTag( 0 ), attribVectorTag( 0 ), entityNameTag( 0 ), categoryTag( 0 ), hasMidNodesTag( 0 ),
      swapForEndianness( false ), int_buf( NULL ), mFileSet( 0 ), printedSeqWarning( false ),
      printedElemWarning( false ), acisDumpFile( NULL )
{
    assert( NULL != impl );
    mdbImpl = impl;
    impl->query_interface( readUtilIface );
    assert( NULL != readUtilIface );

    currVHandleOffset = -1;
    for( EntityType this_type = MBVERTEX; this_type < MBMAXTYPE; this_type++ )
        currElementIdOffset[this_type] = -1;

    ErrorCode rval;
    rval = mdbImpl->tag_get_handle( MATERIAL_SET_TAG_NAME, 1, MB_TYPE_INTEGER, blockTag );MB_CHK_SET_ERR_RET( rval, "Failed to tag_get_handle." );
    rval = mdbImpl->tag_get_handle( DIRICHLET_SET_TAG_NAME, 1, MB_TYPE_INTEGER, nsTag );MB_CHK_SET_ERR_RET( rval, "Failed to tag_get_handle." );
    rval = mdbImpl->tag_get_handle( NEUMANN_SET_TAG_NAME, 1, MB_TYPE_INTEGER, ssTag );MB_CHK_SET_ERR_RET( rval, "Failed to tag_get_handle." );

    if( 0 == entityNameTag )
    {
        rval = mdbImpl->tag_get_handle( NAME_TAG_NAME, NAME_TAG_SIZE, MB_TYPE_OPAQUE, entityNameTag,
                                        MB_TAG_SPARSE | MB_TAG_CREAT );MB_CHK_SET_ERR_RET( rval, "Failed to tag_get_handle." );
    }

    cubMOABVertexMap = NULL;
}

Member Function Documentation

void moab::Tqdcfr::check_contiguous ( const unsigned int  num_ents,
int &  contig,
unsigned int &  min_id,
unsigned int &  max_id 
)

Definition at line 1623 of file Tqdcfr.cpp.

References moab::MAX(), moab::MIN(), and uint_buf.

Referenced by read_elements(), and read_nodes().

{
    unsigned int *id_it, curr_id, i;

    // Check in forward-contiguous direction
    id_it   = &uint_buf[0];
    curr_id = *id_it++ + 1;
    contig  = 1;
    min_id  = uint_buf[0];
    max_id  = uint_buf[0];
    for( i = 1; i < num_ents; id_it++, i++, curr_id++ )
    {
        if( *id_it != curr_id ) { contig = 0; }
        min_id = MIN( min_id, uint_buf[i] );
        max_id = MAX( max_id, uint_buf[i] );
    }

    // If we got here and we're at the end of the loop, it's forward-contiguous
    if( 1 == contig ) return;

    // Check in reverse-contiguous direction
    contig  = -1;
    id_it   = &uint_buf[0];
    curr_id = *id_it++ - 1;
    for( i = 1; i < num_ents; id_it++, i++, curr_id-- )
    {
        if( *id_it != curr_id )
        {
            contig = 0;
            break;
        }
    }

    // If we got here and we're at the end of the loop, it's reverse-contiguous
    if( -1 == contig ) return;

    // One final check, for contiguous but out of order
    if( max_id - min_id + 1 == num_ents ) contig = -2;

    // Else it's not contiguous at all
    contig = 0;
}

Definition at line 475 of file Tqdcfr.cpp.

References moab::Range::begin(), moab::BLOCK_NODESET_OFFSET_TAG_NAME, moab::BLOCK_SIDESET_OFFSET_TAG_NAME, blockTag, DIRICHLET_SET_TAG_NAME, moab::Range::empty(), moab::Range::end(), ErrorCode, moab::Interface::get_entities_by_type_and_tag(), globalIdTag, moab::Range::insert(), MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_INTEGER, MBENTITYSET, mdbImpl, NEUMANN_SET_TAG_NAME, nsTag, moab::Range::size(), ssTag, moab::Interface::tag_delete_data(), moab::Interface::tag_get_data(), moab::Interface::tag_get_handle(), and moab::Interface::tag_set_data().

Referenced by load_file().

{
    // Look first for the nodeset and sideset offset flags; if they're not
    // set, we don't need to convert
    const EntityHandle msh = 0;
    unsigned int nodeset_offset, sideset_offset;
    Tag tmp_tag;
    ErrorCode result = mdbImpl->tag_get_handle( BLOCK_NODESET_OFFSET_TAG_NAME, 1, MB_TYPE_INTEGER, tmp_tag );
    if( MB_SUCCESS != result )
        nodeset_offset = 0;
    else
    {
        result = mdbImpl->tag_get_data( tmp_tag, &msh, 1, &nodeset_offset );
        if( MB_SUCCESS != result ) return result;
    }

    result = mdbImpl->tag_get_handle( BLOCK_SIDESET_OFFSET_TAG_NAME, 1, MB_TYPE_INTEGER, tmp_tag );
    if( MB_SUCCESS != result )
        sideset_offset = 0;
    else
    {
        result = mdbImpl->tag_get_data( tmp_tag, &msh, 1, &sideset_offset );
        if( MB_SUCCESS != result ) return result;
    }

    if( 0 == nodeset_offset && 0 == sideset_offset ) return MB_SUCCESS;

    // Look for all blocks
    Range blocks;
    result = mdbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &blockTag, NULL, 1, blocks );
    if( MB_SUCCESS != result || blocks.empty() ) return result;

    // Get the id tag for them
    std::vector< int > block_ids( blocks.size() );
    result = mdbImpl->tag_get_data( globalIdTag, blocks, &block_ids[0] );
    if( MB_SUCCESS != result ) return result;

    unsigned int i      = 0;
    Range::iterator rit = blocks.begin();
    Range new_nodesets, new_sidesets;
    std::vector< int > new_nodeset_ids, new_sideset_ids;
    for( ; rit != blocks.end(); i++, ++rit )
    {
        if( 0 != nodeset_offset && block_ids[i] >= (int)nodeset_offset &&
            ( nodeset_offset > sideset_offset || block_ids[i] < (int)sideset_offset ) )
        {
            // This is a nodeset
            new_nodesets.insert( *rit );
            new_nodeset_ids.push_back( block_ids[i] );
        }
        else if( 0 != sideset_offset && block_ids[i] >= (int)sideset_offset &&
                 ( sideset_offset > nodeset_offset || block_ids[i] < (int)nodeset_offset ) )
        {
            // This is a sideset
            new_sidesets.insert( *rit );
            new_sideset_ids.push_back( block_ids[i] );
        }
    }

    // OK, have the new nodesets and sidesets; now remove the block tags, and
    // add nodeset and sideset tags
    ErrorCode tmp_result = MB_SUCCESS;
    if( 0 != nodeset_offset )
    {
        if( 0 == nsTag )
        {
            int default_val = 0;
            tmp_result      = mdbImpl->tag_get_handle( DIRICHLET_SET_TAG_NAME, 1, MB_TYPE_INTEGER, nsTag,
                                                  MB_TAG_SPARSE | MB_TAG_CREAT, &default_val );
            if( MB_SUCCESS != tmp_result ) result = tmp_result;
        }
        if( MB_SUCCESS == tmp_result ) tmp_result = mdbImpl->tag_set_data( nsTag, new_nodesets, &new_nodeset_ids[0] );
        if( MB_SUCCESS != tmp_result ) result = tmp_result;
        tmp_result = mdbImpl->tag_delete_data( blockTag, new_nodesets );
        if( MB_SUCCESS != tmp_result ) result = tmp_result;
    }
    if( 0 != sideset_offset )
    {
        if( 0 == ssTag )
        {
            int default_val = 0;
            tmp_result      = mdbImpl->tag_get_handle( NEUMANN_SET_TAG_NAME, 1, MB_TYPE_INTEGER, ssTag,
                                                  MB_TAG_SPARSE | MB_TAG_CREAT, &default_val );
            if( MB_SUCCESS != tmp_result ) result = tmp_result;
        }
        if( MB_SUCCESS == tmp_result ) tmp_result = mdbImpl->tag_set_data( ssTag, new_sidesets, &new_sideset_ids[0] );
        if( MB_SUCCESS != tmp_result ) result = tmp_result;
        tmp_result = mdbImpl->tag_delete_data( blockTag, new_sidesets );
        if( MB_SUCCESS != tmp_result ) result = tmp_result;
    }

    return result;
}
void moab::Tqdcfr::CONVERT_TO_INTS ( unsigned int  num_ents)

Definition at line 221 of file Tqdcfr.cpp.

References int_buf, and uint_buf.

Referenced by read_block(), read_elements(), read_group(), read_nodes(), read_nodeset(), and read_sideset().

{
    for( unsigned int i = 0; i < num_ents; i++ )
        int_buf[i] = uint_buf[i];
}
ReaderIface * moab::Tqdcfr::factory ( Interface iface) [static]

Definition at line 227 of file Tqdcfr.cpp.

References Tqdcfr().

Referenced by moab::ReaderWriterSet::ReaderWriterSet().

{
    return new Tqdcfr( iface );
}
int moab::Tqdcfr::find_model ( const unsigned int  model_type)

Definition at line 1739 of file Tqdcfr.cpp.

References fileTOC, modelEntries, and moab::Tqdcfr::FileTOC::numModels.

Referenced by load_file().

{
    for( unsigned int i = 0; i < fileTOC.numModels; i++ )
    {
        if( modelEntries[i].modelType == model_type ) return i;
    }

    return -1;
}
void moab::Tqdcfr::FREADC ( unsigned  num_ents)

Definition at line 148 of file Tqdcfr.cpp.

References char_buf, and FREADCA().

Referenced by load_file(), read_acis_records(), read_block(), read_md_string(), read_nodeset(), and read_sideset().

{
    char_buf.resize( num_ents );
    FREADCA( num_ents, &char_buf[0] );
}
void moab::Tqdcfr::FREADCA ( unsigned  num_ents,
char *  arrat 
)

Definition at line 215 of file Tqdcfr.cpp.

References cubFile, and IO_ASSERT.

Referenced by FREADC(), read_nodeset(), and read_sideset().

{
    unsigned rval = fread( array, sizeof( char ), num_ents, cubFile );
    IO_ASSERT( rval == num_ents );
}
void moab::Tqdcfr::FREADD ( unsigned  num_ents)

Definition at line 142 of file Tqdcfr.cpp.

References dbl_buf, and FREADDA().

Referenced by read_block(), read_meta_data(), and read_sideset().

{
    dbl_buf.resize( num_ents );
    FREADDA( num_ents, &dbl_buf[0] );
}
void moab::Tqdcfr::FREADDA ( unsigned  num_ents,
double *  array 
)

Definition at line 200 of file Tqdcfr.cpp.

References cubFile, IO_ASSERT, moab::swap8_voff(), and swapForEndianness.

Referenced by FREADD(), and read_nodes().

{
    unsigned rval = fread( array, sizeof( double ), num_ents, cubFile );
    IO_ASSERT( rval == num_ents );
    if( swapForEndianness )
    {
        double* pt = array;
        for( unsigned int i = 0; i < num_ents; i++ )
        {
            swap8_voff( (long*)pt );
            pt++;
        }
    }
}
void moab::Tqdcfr::FREADIA ( unsigned  num_ents,
unsigned int *  array 
)

Definition at line 185 of file Tqdcfr.cpp.

References cubFile, IO_ASSERT, moab::swap4_uint(), and swapForEndianness.

Referenced by FREADI(), and read_sideset().

{
    unsigned rval = fread( array, sizeof( unsigned int ), num_ents, cubFile );
    IO_ASSERT( rval == num_ents );
    if( swapForEndianness )
    {
        unsigned int* pt = array;
        for( unsigned int i = 0; i < num_ents; i++ )
        {
            swap4_uint( (unsigned int*)pt );
            pt++;
        }
    }
}
ErrorCode moab::Tqdcfr::get_entities ( const unsigned int *  mem_types,
int *  id_buf,
const unsigned int  id_buf_size,
const bool  is_group,
std::vector< EntityHandle > &  entities 
) [private]

get entities with individually-specified types; if is_group is false, increment each mem_type by 2 since they're CSOEntityType's and not group types

Definition at line 1219 of file Tqdcfr.cpp.

References ErrorCode, and MB_SUCCESS.

Referenced by read_block(), read_group(), read_nodeset(), and read_sideset().

{
    ErrorCode tmp_result, result = MB_SUCCESS;

    for( unsigned int i = 0; i < id_buf_size; i++ )
    {
        if( is_group )
            tmp_result = get_entities( mem_types[i], id_buf + i, 1, entities, entities );
        else
            // For blocks/nodesets/sidesets, use CSOEntityType, which is 2 greater than
            // group entity types
            tmp_result = get_entities( mem_types[i] + 2, id_buf + i, 1, entities, entities );
        if( MB_SUCCESS != tmp_result ) result = tmp_result;
    }

    return result;
}
ErrorCode moab::Tqdcfr::get_entities ( const unsigned int  this_type,
int *  id_buf,
const unsigned int  id_buf_size,
std::vector< EntityHandle > &  entities,
std::vector< EntityHandle > &  excl_entities 
) [private]

get entities specified by type and ids, append to entities

Definition at line 1238 of file Tqdcfr.cpp.

References ErrorCode, get_mesh_entities(), get_ref_entities(), HEX, NODE, and VERTEX.

{
    ErrorCode result = MB_FAILURE;

    if( this_type <= VERTEX )
        result = get_ref_entities( this_type, id_buf, id_buf_size, entities );
    else if( this_type >= HEX && this_type <= NODE )
        result = get_mesh_entities( this_type, id_buf, id_buf_size, entities, excl_entities );

    return result;
}
ErrorCode moab::Tqdcfr::get_mesh_entities ( const unsigned int  this_type,
int *  id_buf,
const unsigned  id_buf_size,
std::vector< EntityHandle > &  entities,
std::vector< EntityHandle > &  excl_entities 
) [private]

get mesh entities with specified type and ids

Definition at line 1260 of file Tqdcfr.cpp.

References cubMOABVertexMap, currVHandleOffset, moab::Range::empty(), entities, moab::CN::EntityTypeName(), ErrorCode, moab::Interface::get_entities_by_type(), globalIdTag, group_type_to_mb_type, MB_SET_ERR, MB_SUCCESS, MB_TAG_NOT_FOUND, MBMAXTYPE, MBVERTEX, mdbImpl, moab::Range::size(), moab::Interface::tag_get_data(), and moab::Interface::type_from_handle().

Referenced by get_entities().

{
    ErrorCode result                      = MB_SUCCESS;
    std::vector< EntityHandle >* ent_list = NULL;
    EntityType this_ent_type              = MBVERTEX;
    const unsigned int arr_len            = sizeof( group_type_to_mb_type ) / sizeof( group_type_to_mb_type[0] );
    if( this_type > 1000 )
    {
        if( this_type - 1000 < arr_len )
        {
            this_ent_type = group_type_to_mb_type[this_type - 1000];
            ent_list      = &excl_entities;
        }
    }
    else
    {
        if( this_type < arr_len )
        {
            this_ent_type = group_type_to_mb_type[this_type];
            ent_list      = &entities;
        }
    }
    if( NULL == ent_list ) { MB_SET_ERR( MB_FAILURE, "Entities list is NULL" ); }

    // Get entities with this type, and get their cub id tags
    if( MBVERTEX == this_ent_type )
    {
        // Use either vertex offset or cubMOABVertexMap
        if( NULL == cubMOABVertexMap )
        {
            for( unsigned int i = 0; i < id_buf_size; i++ )
                ent_list->push_back( ( EntityHandle )( id_buf[i] + currVHandleOffset ) );
        }
        else
        {
            for( unsigned int i = 0; i < id_buf_size; i++ )
            {
                assert( 0 != ( *cubMOABVertexMap )[id_buf[i]] );
                ent_list->push_back( ( *cubMOABVertexMap )[id_buf[i]] );
            }
        }
    }
    else
    {
        Range tmp_ents;
        result = mdbImpl->get_entities_by_type( 0, this_ent_type, tmp_ents );
        if( MB_SUCCESS != result ) return result;
        if( tmp_ents.empty() && 0 != id_buf_size ) return MB_FAILURE;

        std::vector< int > cub_ids( tmp_ents.size() );
        result = mdbImpl->tag_get_data( globalIdTag, tmp_ents, &cub_ids[0] );
        if( MB_SUCCESS != result && MB_TAG_NOT_FOUND != result ) return result;

        // Now go through id list, finding each entity by id
        for( unsigned int i = 0; i < id_buf_size; i++ )
        {
            std::vector< int >::iterator vit = std::find( cub_ids.begin(), cub_ids.end(), id_buf[i] );
            if( vit != cub_ids.end() )
            {
                EntityHandle this_ent = tmp_ents[vit - cub_ids.begin()];
                if( mdbImpl->type_from_handle( this_ent ) != MBMAXTYPE ) ent_list->push_back( this_ent );
            }
            else
            {
                std::cout << "Warning: didn't find " << CN::EntityTypeName( this_ent_type ) << " " << id_buf[i]
                          << std::endl;
            }
        }
    }

    return result;
}
ErrorCode moab::Tqdcfr::get_names ( MetaDataContainer md,
unsigned int  set_index,
EntityHandle  seth 
) [private]

Definition at line 1071 of file Tqdcfr.cpp.

References entityNameTag, ErrorCode, moab::Tqdcfr::MetaDataContainer::get_md_entry(), MB_CHK_ERR, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_OPAQUE, mdbImpl, moab::Tqdcfr::MetaDataContainer::MetaDataEntry::mdStringValue, moab::Tqdcfr::MetaDataContainer::metadataEntries, NAME_TAG_NAME, NAME_TAG_SIZE, moab::Interface::tag_get_handle(), and moab::Interface::tag_set_data().

Referenced by read_block(), read_nodeset(), and read_sideset().

{
    ErrorCode result = MB_SUCCESS;

    // Now get block names, if any
    int md_index = md.get_md_entry( set_index, "Name" );
    if( -1 == md_index ) return result;
    MetaDataContainer::MetaDataEntry* md_entry = &( md.metadataEntries[md_index] );
    // assert(md_entry->mdStringValue.length() + 1 <= NAME_TAG_SIZE);
    char name_tag_data[NAME_TAG_SIZE];
    memset( name_tag_data, 0, NAME_TAG_SIZE );  // Make sure any extra bytes zeroed
    strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE - 1 );
    result = mdbImpl->tag_set_data( entityNameTag, &seth, 1, name_tag_data );
    if( MB_SUCCESS != result ) return result;

    // Look for extra names
    md_index = md.get_md_entry( set_index, "NumExtraNames" );
    if( -1 == md_index ) return result;
    int num_names = md.metadataEntries[md_index].mdIntValue;
    for( int i = 0; i < num_names; i++ )
    {
        std::ostringstream extra_name_label( "ExtraName" );
        extra_name_label << i;
        std::ostringstream moab_extra_name( "EXTRA_" );
        moab_extra_name << NAME_TAG_NAME << i;
        md_index = md.get_md_entry( set_index, extra_name_label.str().c_str() );
        if( -1 != md_index )
        {
            md_entry = &( md.metadataEntries[md_index] );
            Tag extra_name_tag;
            ErrorCode rval;
            rval = mdbImpl->tag_get_handle( moab_extra_name.str().c_str(), NAME_TAG_SIZE, MB_TYPE_OPAQUE,
                                            extra_name_tag, MB_TAG_SPARSE | MB_TAG_CREAT );MB_CHK_ERR( rval );
            memset( name_tag_data, 0, NAME_TAG_SIZE );  // Make sure any extra bytes zeroed
            strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE - 1 );
            result = mdbImpl->tag_set_data( extra_name_tag, &seth, 1, name_tag_data );
        }
    }

    return result;
}
ErrorCode moab::Tqdcfr::get_ref_entities ( const unsigned int  this_type,
int *  id_buf,
const unsigned  id_buf_size,
std::vector< EntityHandle > &  entities 
) [private]

get ref entity sets with specified type and ids

Definition at line 1251 of file Tqdcfr.cpp.

References gidSetMap, and MB_SUCCESS.

Referenced by get_entities().

{
    for( unsigned int i = 0; i < id_buf_size; i++ )
        entities.push_back( ( gidSetMap[5 - this_type] )[id_buf[i]] );

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::interpret_acis_records ( std::vector< AcisRecord > &  records) [private]

Definition at line 2431 of file Tqdcfr.cpp.

References ATTRIB, attribVectorTag, ErrorCode, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_OPAQUE, mdbImpl, parse_acis_attribs(), REC, moab::Interface::tag_get_handle(), and UNKNOWN.

Referenced by read_acis_records().

{
    // Make a tag for the vector holding unrecognized attributes
    void* default_val = NULL;
    ErrorCode result  = mdbImpl->tag_get_handle( "ATTRIB_VECTOR", sizeof( void* ), MB_TYPE_OPAQUE, attribVectorTag,
                                                MB_TAG_CREAT | MB_TAG_SPARSE, &default_val );
    if( MB_SUCCESS != result ) return result;

    unsigned int current_record = 0;

#define REC records[current_record]

    while( current_record != records.size() )
    {
        // If this record's been processed, or if it's an attribute, continue
        if( REC.processed || REC.rec_type == Tqdcfr::ATTRIB )
        {
            current_record++;
            continue;
        }

        if( REC.rec_type == Tqdcfr::UNKNOWN )
        {
            REC.processed = true;
            current_record++;
            continue;
        }

        // It's a known, non-attrib rec type; parse for any attribs
        parse_acis_attribs( current_record, records );

        REC.processed = true;

        current_record++;
    }

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::load_file ( const char *  file_name,
const EntityHandle file_set,
const FileOptions opts,
const SubsetList subset_list = 0,
const Tag file_id_tag = 0 
) [virtual]

Load mesh from a file.

Method all readers must provide to import a mesh.

Parameters:
file_nameThe file to read.
file_setOptional pointer to entity set representing file. If this is not NULL, reader may optionally tag the pointed-to set with format-specific meta-data.
subset_listAn optional struct pointer specifying the tags identifying entity sets to be read.
file_id_tagIf specified, reader should store for each entity it reads, a unique integer ID for this tag.
Author:
Jason Kraftcheck

Implements moab::ReaderIface.

Definition at line 294 of file Tqdcfr.cpp.

References moab::ReadUtilIface::assign_ids(), beforeEnts, moab::Tqdcfr::FEModelHeader::blockArray, char_buf, convert_nodesets_sidesets(), cubFile, moab::debug, dim, ErrorCode, moab::Tqdcfr::ModelEntry::feBlockH, moab::Tqdcfr::ModelEntry::feGeomH, moab::Tqdcfr::ModelEntry::feGroupH, moab::Tqdcfr::ModelEntry::feModelHeader, moab::Tqdcfr::ModelEntry::feNodeSetH, moab::Tqdcfr::ModelEntry::feSideSetH, fileTOC, find_model(), FREADC(), moab::Tqdcfr::FEModelHeader::geomArray, moab::Interface::get_entities_by_handle(), moab::FileOptions::get_int_option(), moab::Tqdcfr::MetaDataContainer::get_md_entry(), moab::FileOptions::get_null_option(), moab::FileOptions::get_str_option(), moab::Tqdcfr::FEModelHeader::groupArray, moab::Interface::list_entities(), moab::major, moab::Tqdcfr::GeomHeader::maxDim, MB_CHK_SET_ERR, MB_SET_ERR, MB_SUCCESS, MB_UNSUPPORTED_OPERATION, mdbImpl, mesh, moab::Tqdcfr::MetaDataContainer::metadataEntries, moab::minor, modelEntries, modelMetaData, moab::Tqdcfr::FileTOC::modelMetaDataOffset, moab::Tqdcfr::FEModelHeader::nodesetArray, moab::Tqdcfr::FEModelHeader::ArrayInfo::numEntities, read_acis_records(), read_block(), read_elements(), read_file_header(), read_group(), moab::Tqdcfr::ModelEntry::read_header_info(), read_meta_data(), moab::Tqdcfr::ModelEntry::read_metadata_info(), read_model_entries(), read_nodes(), read_nodeset(), read_sideset(), readUtilIface, moab::GeomTopoTool::restore_topology_from_adjacency(), RR, moab::Tqdcfr::FEModelHeader::sidesetArray, and moab::subtract().

Referenced by main().

{
    ErrorCode result;

    int tmpval;
    if( MB_SUCCESS == opts.get_int_option( "DEBUG_IO", 1, tmpval ) )
    {
        if( 0 < tmpval ) debug = true;
    }

    if( subset_list ) { MB_SET_ERR( MB_UNSUPPORTED_OPERATION, "Reading subset of files not supported for CUB files" ); }

    // Open file
    cubFile = fopen( file_name, "rb" );
    if( NULL == cubFile ) { MB_SET_ERR( MB_FAILURE, "File not found" ); }

    // Verify magic string
    FREADC( 4 );
    if( !( char_buf[0] == 'C' && char_buf[1] == 'U' && char_buf[2] == 'B' && char_buf[3] == 'E' ) )
    {
        fclose( cubFile );
        MB_SET_ERR( MB_FAILURE, "This doesn't appear to be a .cub file" );
    }

    // Get "before" entities
    result = mdbImpl->get_entities_by_handle( 0, beforeEnts );MB_CHK_SET_ERR( result, "Couldn't get \"before\" entities" );

    // ***********************
    // Read model header type information...
    // ***********************
    if( debug ) std::cout << "Reading file header." << std::endl;
    result = read_file_header();RR;

    if( debug ) std::cout << "Reading model entries." << std::endl;
    result = read_model_entries();RR;

    // Read model metadata
    if( debug ) std::cout << "Reading model metadata." << std::endl;
    result = read_meta_data( fileTOC.modelMetaDataOffset, modelMetaData );RR;

    double data_version;
    int md_index = modelMetaData.get_md_entry( 2, "DataVersion" );
    if( -1 == md_index )
        data_version = 1.0;
    else
        data_version = modelMetaData.metadataEntries[md_index].mdDblValue;

    // Get the major/minor cubit version that wrote this file
    // int major = -1, minor = -1;
    md_index = modelMetaData.get_md_entry( 2, "CubitVersion" );
    if( md_index >= 0 && !modelMetaData.metadataEntries[md_index].mdStringValue.empty() )
        sscanf( modelMetaData.metadataEntries[md_index].mdStringValue.c_str(), "%d.%d", &major, &minor );

    // ***********************
    // Read mesh...
    // ***********************
    int index = find_model( mesh );
    if( -1 == index ) return MB_FAILURE;
    ModelEntry* mesh_model = &modelEntries[index];

    // First the header & metadata info
    if( debug ) std::cout << "Reading mesh model header and metadata." << std::endl;
    result = mesh_model->read_header_info( this, data_version );
    if( MB_SUCCESS != result ) return result;
    result = mesh_model->read_metadata_info( this );
    if( MB_SUCCESS != result ) return result;

    // Now read in mesh for each geometry entity; read in order of increasing dimension
    // so we have all the mesh we need
    for( int dim = 0; dim < 4; dim++ )
    {
        for( unsigned int gindex = 0; gindex < mesh_model->feModelHeader.geomArray.numEntities; gindex++ )
        {
            Tqdcfr::GeomHeader* geom_header = &mesh_model->feGeomH[gindex];

            if( geom_header->maxDim != dim ) continue;

            // Read nodes
            if( debug ) std::cout << "Reading geom index " << gindex << " mesh: nodes... ";
            result = read_nodes( gindex, mesh_model, geom_header );
            if( MB_SUCCESS != result ) return result;

            // Read elements
            if( debug ) std::cout << "elements... ";
            result = read_elements( mesh_model, geom_header );
            if( MB_SUCCESS != result ) return result;
            if( debug ) std::cout << std::endl;
        }
    }

    // ***********************
    // Read acis records...
    // ***********************
    std::string sat_file_name;
    if( MB_SUCCESS != opts.get_str_option( "SAT_FILE", sat_file_name ) ) sat_file_name.clear();
    result = read_acis_records( sat_file_name.empty() ? NULL : sat_file_name.c_str() );RR;

    // ***********************
    // Read groups...
    // ***********************
    if( debug ) std::cout << "Reading groups... ";
    for( unsigned int grindex = 0; grindex < mesh_model->feModelHeader.groupArray.numEntities; grindex++ )
    {
        GroupHeader* group_header = &mesh_model->feGroupH[grindex];
        result                    = read_group( grindex, mesh_model, group_header );
        if( MB_SUCCESS != result ) return result;
    }
    if( debug ) std::cout << mesh_model->feModelHeader.groupArray.numEntities << " read successfully." << std::endl;

    // ***********************
    // Read blocks...
    // ***********************
    if( debug ) std::cout << "Reading blocks... ";
    Range ho_entities;
    for( unsigned int blindex = 0; blindex < mesh_model->feModelHeader.blockArray.numEntities; blindex++ )
    {
        BlockHeader* block_header = &mesh_model->feBlockH[blindex];
        result                    = read_block( blindex, data_version, mesh_model, block_header );
        if( MB_SUCCESS != result ) return result;
    }

    if( debug ) std::cout << mesh_model->feModelHeader.blockArray.numEntities << " read successfully." << std::endl;

    // ***********************
    // Read nodesets...
    // ***********************
    if( debug ) std::cout << "Reading nodesets... ";
    for( unsigned int nsindex = 0; nsindex < mesh_model->feModelHeader.nodesetArray.numEntities; nsindex++ )
    {
        NodesetHeader* nodeset_header = &mesh_model->feNodeSetH[nsindex];
        result                        = read_nodeset( nsindex, mesh_model, nodeset_header );
        if( MB_SUCCESS != result ) return result;
    }
    if( debug ) std::cout << mesh_model->feModelHeader.nodesetArray.numEntities << " read successfully." << std::endl;

    // ***********************
    // Read sidesets...
    // ***********************
    if( debug ) std::cout << "Reading sidesets...";
    for( unsigned int ssindex = 0; ssindex < mesh_model->feModelHeader.sidesetArray.numEntities; ssindex++ )
    {
        SidesetHeader* sideset_header = &mesh_model->feSideSetH[ssindex];
        result                        = read_sideset( ssindex, data_version, mesh_model, sideset_header );
        if( MB_SUCCESS != result ) return result;
    }
    if( debug ) std::cout << mesh_model->feModelHeader.sidesetArray.numEntities << " read successfully." << std::endl;

    if( debug )
    {
        std::cout << "Read the following mesh:" << std::endl;
        mdbImpl->list_entities( 0, 0 );
    }

    // Convert blocks to nodesets/sidesets if tag is set
    result = convert_nodesets_sidesets();
    if( MB_SUCCESS != result ) return result;

    Range after_ents;
    result = mdbImpl->get_entities_by_handle( 0, after_ents );
    if( MB_SUCCESS != result ) return result;

    after_ents = subtract( after_ents, beforeEnts );

    if( file_id_tag ) readUtilIface->assign_ids( *file_id_tag, after_ents );

    if( MB_SUCCESS != opts.get_null_option( "SKIP_TOPOLOGY" ) )
    {
        // **************************
        // Restore geometric topology
        // **************************
        GeomTopoTool gtt( mdbImpl, true, 0, true, false );
        result = gtt.restore_topology_from_adjacency();
        if( MB_SUCCESS != result ) { std::cout << "Failed to restore topology " << std::endl; }
    }

    // done with the cubit file
    fclose( cubFile );
    return result;
}
ErrorCode moab::Tqdcfr::parse_acis_attribs ( const unsigned int  entity_rec_num,
std::vector< AcisRecord > &  records 
) [private]

Definition at line 2470 of file Tqdcfr.cpp.

References aBODY, acisDumpFile, aEDGE, attribVectorTag, aVERTEX, entityNameTag, ErrorCode, FACE, gidSetMap, globalIdTag, LUMP, moab::major, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_NOT_FOUND, MB_TAG_SPARSE, MB_TYPE_OPAQUE, mdbImpl, name_tag, NAME_TAG_NAME, NAME_TAG_SIZE, moab::Interface::tag_get_data(), moab::Interface::tag_get_handle(), moab::Interface::tag_set_data(), uidSetMap, and UNKNOWN.

Referenced by interpret_acis_records().

{
    unsigned int num_read;
    std::vector< std::string > attrib_vec;
    char temp_name[1024];
    char name_tag_val[NAME_TAG_SIZE];
    std::string name_tag;
    int id          = -1;
    int uid         = -1;
    int next_attrib = -1;
    ErrorCode result;

    int current_attrib = records[entity_rec_num].first_attrib;
    if( -1 == current_attrib ) return MB_SUCCESS;

    if( NULL != acisDumpFile )
    {
        fwrite( "-----------------------------------------------------------------------\n", 1, 72, acisDumpFile );
        fwrite( records[entity_rec_num].att_string.c_str(), sizeof( char ), records[entity_rec_num].att_string.length(),
                acisDumpFile );
    }

    while( -1 != current_attrib )
    {
        if( records[current_attrib].rec_type != Tqdcfr::UNKNOWN &&
            ( records[current_attrib].att_next != next_attrib ||
              records[current_attrib].att_ent_num != (int)entity_rec_num ) )
            return MB_FAILURE;

        if( NULL != acisDumpFile )
            fwrite( records[current_attrib].att_string.c_str(), sizeof( char ),
                    records[current_attrib].att_string.length(), acisDumpFile );

        // Is the attrib one we already recognize?
        if( strncmp( records[current_attrib].att_string.c_str(), "ENTITY_NAME", 11 ) == 0 )
        {
            // Parse name
            int num_chars;
            num_read =
                sscanf( records[current_attrib].att_string.c_str(), "ENTITY_NAME @%d %s", &num_chars, temp_name );
            if( num_read != 2 )
                num_read =
                    sscanf( records[current_attrib].att_string.c_str(), "ENTITY_NAME %d %s", &num_chars, temp_name );
            if( num_read != 2 ) return MB_FAILURE;

            // Put the name on the entity
            name_tag = std::string( temp_name, num_chars );
        }
        else if( strncmp( records[current_attrib].att_string.c_str(), "ENTITY_ID", 9 ) == 0 )
        {
            // Parse id
            int bounding_uid, bounding_sense;
            num_read = sscanf( records[current_attrib].att_string.c_str(), "ENTITY_ID 0 3 %d %d %d", &id, &bounding_uid,
                               &bounding_sense );
            if( 3 != num_read )
            {
                // Try reading updated entity_id format, which has coordinate triple embedded in it
                // too
                float dumx, dumy, dumz;
                num_read = sscanf( records[current_attrib].att_string.c_str(), "ENTITY_ID 3 %f %f %f 3 %d %d %d", &dumx,
                                   &dumy, &dumz, &id, &bounding_uid, &bounding_sense );
                num_read -= 3;
            }

            if( 3 != num_read )
                std::cout << "Warning: bad ENTITY_ID attribute in .sat file, record number " << entity_rec_num
                          << ", record follows:" << std::endl
                          << records[current_attrib].att_string.c_str() << std::endl;
        }
        else if( strncmp( records[current_attrib].att_string.c_str(), "UNIQUE_ID", 9 ) == 0 )
        {
            // Parse uid
            if( major >= 14 )  // Change of format for cubit 14:
                num_read = sscanf( records[current_attrib].att_string.c_str(), "UNIQUE_ID 0 1 %d", &uid );
            else
                num_read = sscanf( records[current_attrib].att_string.c_str(), "UNIQUE_ID 1 0 1 %d", &uid );
            if( 1 != num_read ) return MB_FAILURE;
        }
        else if( strncmp( records[current_attrib].att_string.c_str(), "COMPOSITE_ATTRIB @9 UNIQUE_ID", 29 ) == 0 )
        {
            // Parse uid
            int dum1, dum2, dum3, dum4;
            num_read = sscanf( records[current_attrib].att_string.c_str(),
                               "COMPOSITE_ATTRIB @9 UNIQUE_ID %d %d %d %d %d", &dum1, &dum2, &dum3, &dum4, &uid );
            if( 5 != num_read ) return MB_FAILURE;
        }
        else if( strncmp( records[current_attrib].att_string.c_str(), "COMPOSITE_ATTRIB @9 ENTITY_ID", 29 ) == 0 )
        {
            // Parse id
            int dum1, dum2, dum3;
            num_read = sscanf( records[current_attrib].att_string.c_str(), "COMPOSITE_ATTRIB @9 ENTITY_ID %d %d %d %d",
                               &dum1, &dum2, &dum3, &id );
            if( 4 != num_read ) return MB_FAILURE;
        }
        else
        {
            attrib_vec.push_back( records[current_attrib].att_string );
        }

        records[current_attrib].processed = true;
        next_attrib                       = current_attrib;
        current_attrib                    = records[current_attrib].att_prev;
    }

    // At this point, there aren't entity sets for entity types which don't contain mesh
    // in this case, just return
    if( records[entity_rec_num].rec_type == aBODY || ( records[entity_rec_num].entity == 0 && uid == -1 ) )
    {
        return MB_SUCCESS;
        // Warning: couldn't resolve entity of type 1 because no uid was found.
        // ddriv: GeomTopoTool.cpp:172: ErrorCode GeomTopoTool::separate_by_dimension(const Range&,
        // Range*, void**): Assertion `false' failed. xxx
    }

    // Parsed the data; now put on mdb entities; first we need to find the entity
    if( records[entity_rec_num].entity == 0 ) { records[entity_rec_num].entity = uidSetMap[uid]; }

    if( 0 == records[entity_rec_num].entity ) return MB_SUCCESS;  // We do not have a MOAB entity for this, skip

    // assert(records[entity_rec_num].entity);

    // Set the id
    if( id != -1 )
    {
        result = mdbImpl->tag_set_data( globalIdTag, &( records[entity_rec_num].entity ), 1, &id );
        if( MB_SUCCESS != result ) return result;

        int ent_dim = -1;
        if( records[entity_rec_num].rec_type == aBODY )
            ent_dim = 4;
        else if( records[entity_rec_num].rec_type == LUMP )
            ent_dim = 3;
        else if( records[entity_rec_num].rec_type == FACE )
            ent_dim = 2;
        else if( records[entity_rec_num].rec_type == aEDGE )
            ent_dim = 1;
        else if( records[entity_rec_num].rec_type == aVERTEX )
            ent_dim = 0;
        if( -1 != ent_dim ) gidSetMap[ent_dim][id] = records[entity_rec_num].entity;
    }

    // Set the name
    if( !name_tag.empty() )
    {
        if( 0 == entityNameTag )
        {
            char dum_val[NAME_TAG_SIZE] = { 0 };
            result = mdbImpl->tag_get_handle( NAME_TAG_NAME, NAME_TAG_SIZE, MB_TYPE_OPAQUE, entityNameTag,
                                              MB_TAG_SPARSE | MB_TAG_CREAT, dum_val );
            if( MB_SUCCESS != result ) return result;
        }

        size_t len = name_tag.size();
        if( len >= NAME_TAG_SIZE ) len = NAME_TAG_SIZE - 1;  // Truncate a name that is too big
        memcpy( name_tag_val, name_tag.c_str(), len );
        memset( name_tag_val + len, '\0', NAME_TAG_SIZE - len );
        result = mdbImpl->tag_set_data( entityNameTag, &( records[entity_rec_num].entity ), 1, name_tag_val );
        if( MB_SUCCESS != result ) return result;
    }

    if( !attrib_vec.empty() )
    {
        // Put the attrib vector in a tag on the entity
        std::vector< std::string >* dum_vec;
        result = mdbImpl->tag_get_data( attribVectorTag, &( records[entity_rec_num].entity ), 1, &dum_vec );
        if( MB_SUCCESS != result && MB_TAG_NOT_FOUND != result ) return result;
        if( MB_TAG_NOT_FOUND == result || dum_vec == NULL )
        {
            // Put this list directly on the entity
            dum_vec = new std::vector< std::string >;
            dum_vec->swap( attrib_vec );
            result = mdbImpl->tag_set_data( attribVectorTag, &( records[entity_rec_num].entity ), 1, &dum_vec );
            if( MB_SUCCESS != result )
            {
                delete dum_vec;
                return result;
            }
        }
        else
        {
            // Copy this list over, and delete this list
            std::copy( attrib_vec.begin(), attrib_vec.end(), std::back_inserter( *dum_vec ) );
        }
    }

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::process_record ( AcisRecord this_record) [private]

Definition at line 2669 of file Tqdcfr.cpp.

References aBODY, aEDGE, moab::Tqdcfr::AcisRecord::att_ent_num, moab::Tqdcfr::AcisRecord::att_next, moab::Tqdcfr::AcisRecord::att_prev, moab::Tqdcfr::AcisRecord::att_string, ATTRIB, aVERTEX, FACE, moab::Tqdcfr::AcisRecord::first_attrib, LUMP, MB_SUCCESS, printedSeqWarning, moab::Tqdcfr::AcisRecord::rec_type, and UNKNOWN.

Referenced by read_acis_records().

{
    // Get the entity type
    const char* type_substr;

    // Try attribs first, since the others have some common processing between them
    if( ( type_substr = strstr( this_record.att_string.c_str(), "attrib" ) ) != NULL &&
        type_substr - this_record.att_string.c_str() < 20 )
    {
        this_record.rec_type = Tqdcfr::ATTRIB;
        bool simple_attrib   = false;
        bool generic_attrib  = false;
        if( ( type_substr = strstr( this_record.att_string.c_str(), "simple-snl-attrib" ) ) != NULL )
            simple_attrib = true;
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "integer_attrib-name_attrib-gen-attrib" ) ) !=
                 NULL )
            generic_attrib = true;
        else
        {
            this_record.rec_type = Tqdcfr::UNKNOWN;
            return MB_SUCCESS;
        }

        // Find next space
        type_substr = strchr( type_substr, ' ' );
        if( NULL == type_substr ) return MB_FAILURE;

        // Read the numbers from there
        int num_converted = sscanf( type_substr, " $-1 -1 $%d $%d $%d -1", &( this_record.att_prev ),
                                    &( this_record.att_next ), &( this_record.att_ent_num ) );
        if( num_converted != 3 ) return MB_FAILURE;

        // Trim the string to the attribute, if it's a simple attrib
        if( simple_attrib )
        {
            type_substr = strstr( this_record.att_string.c_str(), "NEW_SIMPLE_ATTRIB" );
            if( NULL == type_substr ) return MB_FAILURE;
            type_substr = strstr( type_substr, "@" );
            if( NULL == type_substr ) return MB_FAILURE;
            type_substr = strstr( type_substr, " " ) + 1;
            // Copy the rest of the string to a dummy string
            std::string dum_str( type_substr );
            this_record.att_string = dum_str;
        }
        else if( generic_attrib )
        {
            type_substr = strstr( this_record.att_string.c_str(), "CUBIT_ID" );
            if( NULL == type_substr ) return MB_FAILURE;
            // Copy the rest of the string to a dummy string
            std::string dum_str( type_substr );
            this_record.att_string = dum_str;
        }
    }
    else
    {
        // Else it's a topological entity, I think
        if( ( type_substr = strstr( this_record.att_string.c_str(), "body" ) ) != NULL &&
            type_substr - this_record.att_string.c_str() < 20 )
        {
            this_record.rec_type = Tqdcfr::aBODY;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "lump" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            this_record.rec_type = Tqdcfr::LUMP;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "shell" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            // Don't care about shells
            this_record.rec_type = Tqdcfr::UNKNOWN;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "surface" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            // Don't care about surfaces
            this_record.rec_type = Tqdcfr::UNKNOWN;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "face" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            this_record.rec_type = Tqdcfr::FACE;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "loop" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            // Don't care about loops
            this_record.rec_type = Tqdcfr::UNKNOWN;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "coedge" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            // Don't care about coedges
            this_record.rec_type = Tqdcfr::UNKNOWN;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "edge" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            this_record.rec_type = Tqdcfr::aEDGE;
        }
        else if( ( type_substr = strstr( this_record.att_string.c_str(), "vertex" ) ) != NULL &&
                 type_substr - this_record.att_string.c_str() < 20 )
        {
            this_record.rec_type = Tqdcfr::aVERTEX;
        }
        else
            this_record.rec_type = Tqdcfr::UNKNOWN;

        if( this_record.rec_type != Tqdcfr::UNKNOWN )
        {
            // Print a warning if it looks like there are sequence numbers
            if( type_substr != this_record.att_string.c_str() && !printedSeqWarning )
            {
                std::cout << "Warning: acis file has sequence numbers!" << std::endl;
                printedSeqWarning = true;
            }

            // Scan ahead to the next white space
            type_substr = strchr( type_substr, ' ' );
            if( NULL == type_substr ) return MB_FAILURE;

            // Get the id of the first attrib
            int num_converted = sscanf( type_substr, " $%d", &( this_record.first_attrib ) );
            if( num_converted != 1 ) return MB_FAILURE;
        }
    }

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::process_sideset_10 ( const int  this_type,
const int  num_ents,
const int  sense_size,
std::vector< EntityHandle > &  ss_entities,
Tqdcfr::SidesetHeader sideseth 
) [private]

process entities in a sideset according to sense flags stored in uint_buf or char_buf (depending on sense_size)

Definition at line 827 of file Tqdcfr.cpp.

References moab::Interface::add_entities(), char_buf, create_set(), ErrorCode, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_INTEGER, mdbImpl, reverse(), moab::Tqdcfr::SidesetHeader::setHandle, moab::Interface::tag_get_handle(), moab::Interface::tag_set_data(), and uint_buf.

Referenced by read_sideset().

{
    std::vector< EntityHandle > forward, reverse;
    if( this_type == 3      // Surface
        && sense_size == 1  // Byte size
    )
    {
        // Interpret sense flags w/o reference to anything
        for( int i = 0; i < num_ents; i++ )
        {
            if( (int)char_buf[i] == 0 )
                forward.push_back( ss_entities[i] );
            else if( (int)char_buf[i] == 1 )
                reverse.push_back( ss_entities[i] );
            else if( (int)char_buf[i] == -1 )
            {  // -1 means "unknown", which means both
                forward.push_back( ss_entities[i] );
                reverse.push_back( ss_entities[i] );
            }
        }
    }
    else if( this_type == 4      // Curve
             && sense_size == 2  // int32 size
    )
    {
        for( int i = 0; i < num_ents; i++ )
        {
            if( uint_buf[i] == 0 )
                forward.push_back( ss_entities[i] );
            else if( uint_buf[i] == 1 )
                reverse.push_back( ss_entities[i] );
            else if( *( (int*)&uint_buf[i] ) == -1 )
            {  // -1 means "unknown", which means both
                forward.push_back( ss_entities[i] );
                reverse.push_back( ss_entities[i] );
            }
        }
    }

    // Now actually put them in the set
    ErrorCode result = MB_SUCCESS;
    if( !forward.empty() )
    {
        ErrorCode tmp_result = mdbImpl->add_entities( sideseth->setHandle, &forward[0], forward.size() );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
    }
    if( !reverse.empty() )
    {
        // Need to make a new set, add a reverse sense tag, then add to the sideset
        EntityHandle reverse_set;
        ErrorCode tmp_result = create_set( reverse_set );
        if( MB_SUCCESS != tmp_result ) result = tmp_result;
        tmp_result = mdbImpl->add_entities( reverse_set, &reverse[0], reverse.size() );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
        int def_val = 1;
        Tag sense_tag;
        tmp_result = mdbImpl->tag_get_handle( "NEUSET_SENSE", 1, MB_TYPE_INTEGER, sense_tag,
                                              MB_TAG_SPARSE | MB_TAG_CREAT, &def_val );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
        def_val    = -1;
        tmp_result = mdbImpl->tag_set_data( sense_tag, &reverse_set, 1, &def_val );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
        tmp_result = mdbImpl->add_entities( sideseth->setHandle, &reverse_set, 1 );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
    }

    return result;
}
ErrorCode moab::Tqdcfr::process_sideset_11 ( std::vector< EntityHandle > &  ss_entities,
int  num_wrts,
Tqdcfr::SidesetHeader sideseth 
) [private]

Definition at line 897 of file Tqdcfr.cpp.

References moab::Interface::add_entities(), char_buf, create_set(), ErrorCode, MB_ALREADY_ALLOCATED, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_INTEGER, mdbImpl, reverse(), moab::Tqdcfr::SidesetHeader::setHandle, moab::Interface::tag_get_handle(), moab::Interface::tag_set_data(), and uint_buf.

Referenced by read_sideset().

{
    std::vector< EntityHandle > forward, reverse;

    unsigned int num_ents = ss_entities.size();
    unsigned int* wrt_it  = &uint_buf[0];

    for( unsigned int i = 0; i < num_ents; i++ )
    {
        unsigned int num_wrt = 0;
        if( 0 != num_wrts ) num_wrt = *wrt_it++;
        for( unsigned int j = 0; j < num_wrt; j++ )
            wrt_it += 2;
        // Assume here that if it's in the list twice, we get both senses
        if( num_wrt > 1 )
        {
            forward.push_back( ss_entities[i] );
            reverse.push_back( ss_entities[i] );
        }
        else
        {
            // Else interpret the sense flag
            if( (int)char_buf[i] == 0 )
                forward.push_back( ss_entities[i] );
            else if( (int)char_buf[i] == 1 )
                reverse.push_back( ss_entities[i] );
            else if( (int)char_buf[i] == -1 )
            {  // -1 means "unknown", which means both
                forward.push_back( ss_entities[i] );
                reverse.push_back( ss_entities[i] );
            }
        }
    }

    // Now actually put them in the set
    ErrorCode result = MB_SUCCESS;
    if( !forward.empty() )
    {
        ErrorCode tmp_result = mdbImpl->add_entities( sideseth->setHandle, &forward[0], forward.size() );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
    }
    if( !reverse.empty() )
    {
        // Need to make a new set, add a reverse sense tag, then add to the sideset
        EntityHandle reverse_set;
        ErrorCode tmp_result = create_set( reverse_set );
        if( MB_SUCCESS != tmp_result ) result = tmp_result;
        tmp_result = mdbImpl->add_entities( reverse_set, &reverse[0], reverse.size() );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
        int def_val = 1;
        Tag sense_tag;
        tmp_result = mdbImpl->tag_get_handle( "NEUSET_SENSE", 1, MB_TYPE_INTEGER, sense_tag,
                                              MB_TAG_SPARSE | MB_TAG_CREAT, &def_val );
        if( tmp_result != MB_SUCCESS && tmp_result != MB_ALREADY_ALLOCATED ) result = tmp_result;
        def_val    = -1;
        tmp_result = mdbImpl->tag_set_data( sense_tag, &reverse_set, 1, &def_val );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
        tmp_result = mdbImpl->add_entities( sideseth->setHandle, &reverse_set, 1 );
        if( tmp_result != MB_SUCCESS ) result = tmp_result;
    }

    return result;
}
ErrorCode moab::Tqdcfr::put_into_set ( EntityHandle  set_handle,
std::vector< EntityHandle > &  entities,
std::vector< EntityHandle > &  excl_entities 
) [private]

Definition at line 1192 of file Tqdcfr.cpp.

References moab::Interface::add_entities(), ErrorCode, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_OPAQUE, mdbImpl, moab::Interface::tag_get_handle(), and moab::Interface::tag_set_data().

Referenced by read_block(), read_group(), and read_nodeset().

{
    // And put entities into this block's set
    ErrorCode result = mdbImpl->add_entities( set_handle, &entities[0], entities.size() );
    if( MB_SUCCESS != result ) return result;

    // Check for excluded entities, and add them to a vector hung off the block if there
    Tag excl_tag;
    if( !excl_entities.empty() )
    {
        result = mdbImpl->tag_get_handle( "Exclude_Entities", sizeof( std::vector< EntityHandle >* ), MB_TYPE_OPAQUE,
                                          excl_tag, MB_TAG_SPARSE | MB_TAG_CREAT );
        if( MB_SUCCESS != result ) return result;
        std::vector< EntityHandle >* new_vector = new std::vector< EntityHandle >;
        new_vector->swap( excl_entities );
        result = mdbImpl->tag_set_data( excl_tag, &set_handle, 1, &new_vector );
        if( MB_SUCCESS != result )
        {
            delete new_vector;
            return MB_FAILURE;
        }
    }

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::read_acis_records ( const char *  sat_file_name = 0) [private]

Definition at line 2320 of file Tqdcfr.cpp.

References acisDumpFile, moab::Tqdcfr::AcisRecord::att_string, char_buf, fileTOC, FREADC(), FSEEK(), interpret_acis_records(), MB_SUCCESS, modelEntries, moab::Tqdcfr::FileTOC::numModels, process_record(), and reset_record().

Referenced by load_file().

{
    // Get the acis model location
    unsigned int acis_model_offset = 0, acis_model_length = 0, acis_model_handle = 1, acis_sat_type = 1;
    for( unsigned int i = 0; i < fileTOC.numModels; i++ )
    {
        if( modelEntries[i].modelHandle == acis_model_handle && modelEntries[i].modelType == acis_sat_type )
        {
            acis_model_offset = modelEntries[i].modelOffset;
            acis_model_length = modelEntries[i].modelLength;
            break;
        }
    }

    if( acis_model_length == 0 ) return MB_SUCCESS;

    std::vector< AcisRecord > records;

    acisDumpFile = NULL;
    if( sat_filename )
    {
        acisDumpFile = fopen( sat_filename, "w+" );
        if( NULL == acisDumpFile ) return MB_FAILURE;
    }

    // Position the file at the start of the acis model
    FSEEK( acis_model_offset );

    unsigned int bytes_left = acis_model_length;

    struct AcisRecord this_record;
    reset_record( this_record );
    char* ret;

    // Make the char buffer at least buf_size + 1 long, to fit null char
    const unsigned int buf_size = 1023;

    // CHECK_SIZE(char_buf, buf_size + 1);
    char_buf.resize( buf_size + 1 );

    while( 0 != bytes_left )
    {
        // Read the next buff characters, or bytes_left if smaller
        unsigned int next_buf = ( bytes_left > buf_size ? buf_size : bytes_left );
        FREADC( next_buf );

        if( NULL != acisDumpFile ) fwrite( &char_buf[0], sizeof( char ), next_buf, acisDumpFile );

        // Put null at end of string to stop searches
        char_buf.resize( next_buf + 1 );
        char_buf[next_buf]   = '\0';
        unsigned int buf_pos = 0;

        // Check for first read, and if so, get rid of the header
        if( bytes_left == acis_model_length )
        {
            // Look for 3 newlines
            ret = strchr( &( char_buf[0] ), '\n' );
            ret = strchr( ret + 1, '\n' );
            ret = strchr( ret + 1, '\n' );
            if( NULL == ret ) return MB_FAILURE;
            buf_pos += ret - &( char_buf[0] ) + 1;
        }

        bytes_left -= next_buf;

        // Now start grabbing records
        do
        {
            // Get next occurrence of '#' (record terminator)
            ret = strchr( &( char_buf[buf_pos] ), '#' );
            while( ret && (unsigned int)( ret + 1 - &char_buf[0] ) < bytes_left && *( ret + 1 ) != '\n' &&
                   *( ret + 1 ) != '\r' && *( ret + 1 ) != 0 )  // CR added for windows
                ret = strchr( ret + 1, '#' );
            if( NULL != ret )
            {
                // Grab the string (inclusive of the record terminator and the line feed) and
                // complete the record
                int num_chars = ret - &( char_buf[buf_pos] ) + 2;
                if( *( ret + 1 ) == '\r' ) num_chars++;  // add more one character for Windows CR
                this_record.att_string.append( &( char_buf[buf_pos] ), num_chars );
                buf_pos += num_chars;
                process_record( this_record );

                // Put the record in the list...
                records.push_back( this_record );

                // And reset the record
                reset_record( this_record );
            }
            else
            {
                // Reached end of buffer; cache string then go get another; discard last character,
                // which will be the null character
                this_record.att_string.append( &( char_buf[buf_pos] ), next_buf - buf_pos );
                buf_pos = next_buf;
            }
        } while( buf_pos < next_buf );
    }

    if( NULL != acisDumpFile )
        fwrite( "\n======================\nSorted acis records:\n======================\n", 1, 68, acisDumpFile );

    // Now interpret the records
    interpret_acis_records( records );

    if( NULL != acisDumpFile ) fclose( acisDumpFile );

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::read_block ( const unsigned int  blindex,
const double  data_version,
Tqdcfr::ModelEntry model,
Tqdcfr::BlockHeader blockh 
)

Definition at line 962 of file Tqdcfr.cpp.

References moab::Tqdcfr::BlockHeader::attribOrder, BLOCK_ATTRIBUTES, moab::Tqdcfr::BlockHeader::blockElemType, moab::Tqdcfr::BlockHeader::blockEntityType, moab::Tqdcfr::ModelEntry::blockMD, char_buf, moab::HigherOrderFactory::convert(), CONVERT_TO_INTS(), cub_elem_num_verts, dbl_buf, moab::CN::Dimension(), entities, ErrorCode, FREADC(), FREADD(), FREADI(), FSEEK(), moab::Interface::get_adjacencies(), get_entities(), moab::Interface::get_entities_by_type(), get_names(), moab::Tqdcfr::BlockHeader::hasMidNodes, int_buf, moab::major, MB_ALREADY_ALLOCATED, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TAG_VARLEN, MB_TYPE_DOUBLE, mbcore, MBMAXTYPE, mdbImpl, moab::Tqdcfr::BlockHeader::memCt, moab::Tqdcfr::BlockHeader::memOffset, moab::Tqdcfr::BlockHeader::memTypeCt, moab::Range::merge(), moab::minor, moab::Tqdcfr::ModelEntry::modelOffset, node_per_elem, put_into_set(), moab::Tqdcfr::BlockHeader::setHandle, moab::Interface::tag_get_handle(), moab::Interface::tag_set_by_ptr(), uint_buf, moab::Interface::UNION, and moab::CN::VerticesPerEntity().

Referenced by load_file().

{
    if( blockh->memCt == 0 ) return MB_SUCCESS;

    // Position file
    FSEEK( model->modelOffset + blockh->memOffset );

    // Read ids for each entity type
    unsigned int num_read = 0;
    int this_type, num_ents;  //, uid;
    std::vector< EntityHandle > block_entities, excl_entities;
    for( unsigned int i = 0; i < blockh->memTypeCt; i++ )
    {
        // Get how many and what type
        FREADI( 2 );
        num_read += 2 * sizeof( int );
        this_type = uint_buf[0];
        num_ents  = uint_buf[1];

        // Now get the ids
        FREADI( num_ents );
        num_read += num_ents * sizeof( int );
        CONVERT_TO_INTS( num_ents );

        ErrorCode result = get_entities( this_type + 2, &int_buf[0], num_ents, block_entities, excl_entities );
        if( MB_SUCCESS != result ) return result;
    }

    // And put entities into this block's set
    ErrorCode result = put_into_set( blockh->setHandle, block_entities, excl_entities );
    if( MB_SUCCESS != result ) return result;

    // Read attribs if there are any
    Tag block_attribs;
    {
        int def_block_attributes_length = 0;
        result = mdbImpl->tag_get_handle( BLOCK_ATTRIBUTES, def_block_attributes_length, MB_TYPE_DOUBLE, block_attribs,
                                          MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_VARLEN, NULL );
        if( MB_SUCCESS != result && MB_ALREADY_ALLOCATED != result ) return result;
    }

    if( blockh->attribOrder > 0 )
    {
        FREADD( blockh->attribOrder );
        num_read += sizeof( double );
        void const* tag_data[] = { &dbl_buf[0] };
        int tag_sizes[]        = { static_cast< int >( blockh->attribOrder ) };
        result = mdbImpl->tag_set_by_ptr( block_attribs, &( blockh->setHandle ), 1, tag_data, tag_sizes );
        if( MB_SUCCESS != result ) return result;
    }

    // Check for more data
    if( num_read < blockh->blockLength )
    {
        FREADC( 2 );  // num_read += 2;
        if( char_buf[0] == 'i' && char_buf[1] == 'd' )
        {
            FREADI( 1 );  // num_read += sizeof(int);
            // uid = int_buf[0];
        }
    }

    result = get_names( model->blockMD, blindex, blockh->setHandle );
    if( MB_SUCCESS != result ) return result;

    // Put additional higher-order nodes into element connectivity list.
    // Cubit saves full connectivity list only for NodeHex and NodeTet
    // elements. Other element types will only have the corners and
    // the mid-element node if there is one. Need to reconstruct additional
    // connectivity entries from mid-nodes of adjacent lower-order entities.
    int node_per_elem = cub_elem_num_verts[blockh->blockElemType];
    if( blockh->blockEntityType == MBMAXTYPE ) return MB_SUCCESS;
    if( ( 14 == major && 2 < minor ) || 15 <= major )
    {
        if( 55 == blockh->blockElemType || CN::VerticesPerEntity( blockh->blockEntityType ) == node_per_elem )
            return MB_SUCCESS;
    }
    else
    {
        if( 52 == blockh->blockElemType || CN::VerticesPerEntity( blockh->blockEntityType ) == node_per_elem )
            return MB_SUCCESS;
    }

    // Can't use Interface::convert_entities because block could contain
    // both entity sets and entities. convert_entities will fail if block
    // contains an entity set, but we still need to call it on any elements
    // directly in the block (rather than a geometry subset). So bypass
    // Interface and call HOFactory directly with an Range of entities.
    Range ho_entities, entities;
    mdbImpl->get_entities_by_type( blockh->setHandle, blockh->blockEntityType, entities, true );
    if( CN::Dimension( blockh->blockEntityType ) > 2 )
    {
        result = mdbImpl->get_adjacencies( entities, 2, false, ho_entities, Interface::UNION );
        if( MB_SUCCESS != result ) return result;
    }
    if( CN::Dimension( blockh->blockEntityType ) > 1 )
    {
        result = mdbImpl->get_adjacencies( entities, 1, false, ho_entities, Interface::UNION );
        if( MB_SUCCESS != result ) return result;
    }
    entities.merge( ho_entities );

    Core* mbcore = dynamic_cast< Core* >( mdbImpl );
    assert( mbcore != NULL );
    HigherOrderFactory ho_fact( mbcore, 0 );
    return ho_fact.convert( entities, !!blockh->hasMidNodes[1], !!blockh->hasMidNodes[2], !!blockh->hasMidNodes[3] );
}

Definition at line 1508 of file Tqdcfr.cpp.

References moab::Interface::add_entities(), categoryTag, check_contiguous(), conn, CONVERT_TO_INTS(), moab::cub_elem_order_map, cubMOABVertexMap, currElementIdOffset, currVHandleOffset, moab::debug, moab::SequenceManager::DEFAULT_ELEMENT_SEQUENCE_SIZE, moab::CN::Dimension(), moab::Tqdcfr::GeomHeader::elemOffset, moab::Tqdcfr::GeomHeader::elemTypeCt, moab::CN::EntityTypeName(), ErrorCode, FREADI(), FSEEK(), geom_categories, geomTag, moab::ReadUtilIface::get_element_connect(), globalIdTag, moab::Interface::handle_from_id(), moab::Interface::id_from_handle(), int_buf, moab::major, MB_SUCCESS, MBVERTEX, mdbImpl, moab::Tqdcfr::ModelEntry::modelOffset, mp_type_to_mb_type, printedElemWarning, readUtilIface, moab::Tqdcfr::GeomHeader::setHandle, moab::Interface::tag_set_data(), uint_buf, and moab::ReadUtilIface::update_adjacencies().

Referenced by load_file().

{
    if( entity->elemTypeCt == 0 ) return MB_SUCCESS;
    const int in_order_map[] = { 0,  1,  2,  3,  4,  5,  6,  7,  8,  9,  10, 11, 12, 13,
                                 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27 };

    // Get data in separate calls to minimize memory usage
    // Position the file
    FSEEK( model->modelOffset + entity->elemOffset );

    int int_type, nodes_per_elem, num_elem;
    int max_dim = -1;
    ErrorCode result;
    for( unsigned int i = 0; i < entity->elemTypeCt; i++ )
    {
        // For this elem type, get the type, nodes per elem, num elems
        FREADI( 3 );
        int_type       = uint_buf[0];
        nodes_per_elem = uint_buf[1];
        num_elem       = uint_buf[2];

        // Get MB element type from cub file's
        EntityType elem_type = mp_type_to_mb_type[int_type];
        max_dim              = ( max_dim < CN::Dimension( elem_type ) ? CN::Dimension( elem_type ) : max_dim );

        if( debug ) std::cout << "type " << CN::EntityTypeName( elem_type ) << ":";

        const int* node_order = cub_elem_order_map[elem_type][nodes_per_elem];
        if( !node_order ) node_order = in_order_map;

        // Get element ids
        FREADI( num_elem );

        // Check to see if ids are contiguous...
        int contig;
        unsigned int max_id, min_id;
        check_contiguous( num_elem, contig, min_id, max_id );
        if( 0 == contig && !printedElemWarning )
        {
            std::cout << "Element ids are not contiguous!" << std::endl;
            printedElemWarning = true;
        }

        // Get a space for reading connectivity data directly into MB
        EntityHandle *conn, start_handle;

        result = readUtilIface->get_element_connect( num_elem, nodes_per_elem, elem_type, int_buf[0], start_handle,
                                                     conn, SequenceManager::DEFAULT_ELEMENT_SEQUENCE_SIZE );
        if( MB_SUCCESS != result ) return result;

        Range dum_range( start_handle, start_handle + num_elem - 1 );

        long elem_offset;
        elem_offset = ( 1 == contig ? start_handle - int_buf[0] : int_buf[num_elem - 1] );
        if( -1 == currElementIdOffset[elem_type] ) currElementIdOffset[elem_type] = elem_offset;

        // Set the gids on elements
        CONVERT_TO_INTS( num_elem );
        result = mdbImpl->tag_set_data( globalIdTag, dum_range, &int_buf[0] );
        if( MB_SUCCESS != result ) return result;

        // Get the connectivity array
        unsigned int total_conn = num_elem * nodes_per_elem;
        if( major >= 14 ) FREADI( num_elem );  // We need to skip num_elem in advance, it looks like
        FREADI( total_conn );

        // Post-process connectivity into handles
        EntityHandle new_handle;
        int j = 0;
        for( int e = 0; e < num_elem; ++e )
        {
            for( int k = 0; k < nodes_per_elem; ++k, ++j )
            {
                if( debug )
                {
                    if( 0 == j ) std::cout << "Conn=";
                    std::cout << ", " << uint_buf[j];
                }
                if( NULL == cubMOABVertexMap )
                    new_handle = (EntityHandle)currVHandleOffset + uint_buf[j];
                else
                {
                    assert( uint_buf[j] < cubMOABVertexMap->size() && 0 != ( *cubMOABVertexMap )[uint_buf[j]] );
                    new_handle = ( *cubMOABVertexMap )[uint_buf[j]];
                }
#ifndef NDEBUG
                EntityHandle dum_handle;
                assert( MB_SUCCESS ==
                        mdbImpl->handle_from_id( MBVERTEX, mdbImpl->id_from_handle( new_handle ), dum_handle ) );
#endif
                conn[e * nodes_per_elem + node_order[k]] = new_handle;
            }
        }

        // Add these elements into the entity's set
        result = mdbImpl->add_entities( entity->setHandle, dum_range );
        if( MB_SUCCESS != result ) return result;

        // Notify MOAB of the new elements
        result = readUtilIface->update_adjacencies( start_handle, num_elem, nodes_per_elem, conn );
        if( MB_SUCCESS != result ) return result;
    }

    // Set the dimension on the geom tag
    result = mdbImpl->tag_set_data( geomTag, &entity->setHandle, 1, &max_dim );
    if( MB_SUCCESS != result ) return result;
    if( max_dim != -1 )
    {
        result = mdbImpl->tag_set_data( categoryTag, &entity->setHandle, 1, &geom_categories[max_dim] );
        if( MB_SUCCESS != result ) return result;
    }

    return MB_SUCCESS;
}

Definition at line 1690 of file Tqdcfr.cpp.

References moab::Tqdcfr::FileTOC::activeFEModel, cubFile, moab::debug, moab::Tqdcfr::FileTOC::fileEndian, moab::Tqdcfr::FileTOC::fileSchema, fileTOC, FREADI(), FSEEK(), IO_ASSERT, MB_SUCCESS, moab::Tqdcfr::FileTOC::modelMetaDataOffset, moab::Tqdcfr::FileTOC::modelTableOffset, moab::Tqdcfr::FileTOC::numModels, moab::Tqdcfr::FileTOC::print(), swapForEndianness, and uint_buf.

Referenced by load_file().

{
    // Read file header
    FSEEK( 4 );
    // Read the first int from the file
    // If it is 0, it is littleEndian
    unsigned rval = fread( &fileTOC.fileEndian, sizeof( unsigned int ), 1, cubFile );
    IO_ASSERT( rval == 1 );
#ifdef WORDS_BIGENDIAN
    if( fileTOC.fileEndian == 0 ) swapForEndianness = true;
#else
    if( fileTOC.fileEndian != 0 ) swapForEndianness = true;
#endif
    if( debug ) std::cout << " swapping ? " << swapForEndianness << "\n";
    FREADI( 5 );
    // fileTOC.fileEndian = uint_buf[0];
    fileTOC.fileSchema          = uint_buf[0];
    fileTOC.numModels           = uint_buf[1];
    fileTOC.modelTableOffset    = uint_buf[2];
    fileTOC.modelMetaDataOffset = uint_buf[3];
    fileTOC.activeFEModel       = uint_buf[4];
    if( debug ) fileTOC.print();

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::read_group ( const unsigned int  gr_index,
Tqdcfr::ModelEntry model,
Tqdcfr::GroupHeader grouph 
)

Definition at line 1113 of file Tqdcfr.cpp.

References CONVERT_TO_INTS(), entityNameTag, ErrorCode, FREADI(), FSEEK(), get_entities(), moab::Tqdcfr::MetaDataContainer::get_md_entry(), moab::Tqdcfr::ModelEntry::groupMD, moab::Tqdcfr::GroupHeader::grpID, int_buf, MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_OPAQUE, mdbImpl, moab::Tqdcfr::MetaDataContainer::MetaDataEntry::mdStringValue, moab::Tqdcfr::GroupHeader::memOffset, moab::Tqdcfr::GroupHeader::memTypeCt, moab::Tqdcfr::MetaDataContainer::metadataEntries, moab::Tqdcfr::ModelEntry::modelOffset, NAME_TAG_NAME, NAME_TAG_SIZE, put_into_set(), moab::Tqdcfr::GroupHeader::setHandle, moab::Interface::tag_get_handle(), moab::Interface::tag_set_data(), and uint_buf.

Referenced by load_file().

{
    // Position file
    FSEEK( model->modelOffset + grouph->memOffset );
    char name_tag_data[NAME_TAG_SIZE];

    // Read ids for each entity type
    int this_type, num_ents;
    std::vector< EntityHandle > grp_entities, excl_entities;
    for( unsigned int i = 0; i < grouph->memTypeCt; i++ )
    {
        // Get how many and what type
        FREADI( 2 );
        this_type = uint_buf[0];
        num_ents  = uint_buf[1];

        // Now get the ids
        FREADI( num_ents );
        CONVERT_TO_INTS( num_ents );

        // Get the entities in this group
        ErrorCode result = get_entities( this_type, &int_buf[0], num_ents, grp_entities, excl_entities );
        if( MB_SUCCESS != result ) return result;
    }

    // Now add the entities
    ErrorCode result = put_into_set( grouph->setHandle, grp_entities, excl_entities );
    if( MB_SUCCESS != result ) return result;

    // Now get group names, if any
    int md_index = model->groupMD.get_md_entry( grouph->grpID, "NAME" );
    if( -1 != md_index )
    {
        MetaDataContainer::MetaDataEntry* md_entry = &( model->groupMD.metadataEntries[md_index] );
        if( 0 == entityNameTag )
        {
            memset( name_tag_data, 0, NAME_TAG_SIZE );
            result = mdbImpl->tag_get_handle( NAME_TAG_NAME, NAME_TAG_SIZE, MB_TYPE_OPAQUE, entityNameTag,
                                              MB_TAG_SPARSE | MB_TAG_CREAT, name_tag_data );
            if( MB_SUCCESS != result ) return result;
        }
        // assert(md_entry->mdStringValue.length() + 1 <= NAME_TAG_SIZE);
        memset( name_tag_data, 0, NAME_TAG_SIZE );  // Make sure any extra bytes zeroed
        strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE - 1 );
        result = mdbImpl->tag_set_data( entityNameTag, &grouph->setHandle, 1, name_tag_data );
        if( MB_SUCCESS != result ) return result;

        // Look for extra names
        md_index = model->groupMD.get_md_entry( group_index, "NumExtraNames" );
        if( -1 != md_index )
        {
            int num_names = model->groupMD.metadataEntries[md_index].mdIntValue;
            for( int i = 0; i < num_names; i++ )
            {
                std::ostringstream extra_name_label( "ExtraName" );
                extra_name_label << i;
                std::ostringstream moab_extra_name( "EXTRA_" );
                moab_extra_name << NAME_TAG_NAME << i;
                md_index = model->groupMD.get_md_entry( group_index, extra_name_label.str().c_str() );
                if( -1 != md_index )
                {
                    md_entry = &( model->groupMD.metadataEntries[md_index] );
                    Tag extra_name_tag;
                    memset( name_tag_data, 0, NAME_TAG_SIZE );
                    result = mdbImpl->tag_get_handle( moab_extra_name.str().c_str(), NAME_TAG_SIZE, MB_TYPE_OPAQUE,
                                                      extra_name_tag, MB_TAG_SPARSE | MB_TAG_CREAT, name_tag_data );
                    if( MB_SUCCESS != result ) return result;
                    // assert(md_entry->mdStringValue.length() + 1 <= NAME_TAG_SIZE);
                    memset( name_tag_data, 0, NAME_TAG_SIZE );  // Make sure any extra bytes zeroed
                    strncpy( name_tag_data, md_entry->mdStringValue.c_str(), NAME_TAG_SIZE - 1 );
                    result = mdbImpl->tag_set_data( extra_name_tag, &grouph->setHandle, 1, name_tag_data );
                }
            }
        }
    }

    return result;
}
ErrorCode moab::Tqdcfr::read_md_string ( std::string &  name)

Definition at line 1813 of file Tqdcfr.cpp.

References char_buf, FREADC(), FREADI(), MB_SUCCESS, and uint_buf.

Referenced by read_meta_data().

{
    FREADI( 1 );
    int str_size = uint_buf[0];
    if( str_size > 0 )
    {
        FREADC( str_size );
        if( char_buf.size() <= (unsigned int)str_size ) char_buf.resize( str_size + 1 );
        char_buf[str_size] = '\0';
        name               = (char*)&char_buf[0];
        // Read pad if any
        int extra = str_size % sizeof( int );
        if( extra )
        {
            // Read extra chars to end of pad
            str_size = sizeof( int ) - extra;
            FREADC( str_size );
        }
    }

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::read_meta_data ( const unsigned int  metadata_offset,
Tqdcfr::MetaDataContainer mc 
)

Definition at line 1749 of file Tqdcfr.cpp.

References moab::Tqdcfr::MetaDataContainer::compressFlag, dbl_buf, moab::debug, FREADD(), FREADI(), FSEEK(), MB_SUCCESS, moab::Tqdcfr::MetaDataContainer::mdSchema, moab::Tqdcfr::MetaDataContainer::metadataEntries, moab::Tqdcfr::MetaDataContainer::print(), read_md_string(), and uint_buf.

Referenced by load_file(), and moab::Tqdcfr::ModelEntry::read_metadata_info().

{
    // Read the metadata header
    FSEEK( metadata_offset );
    FREADI( 3 );
    mc.mdSchema     = uint_buf[0];
    mc.compressFlag = uint_buf[1];

    // Allocate space for the entries
    mc.metadataEntries.resize( uint_buf[2] );

    // Now read the metadata values
    for( unsigned int i = 0; i < mc.metadataEntries.size(); i++ )
    {
        FREADI( 2 );
        mc.metadataEntries[i].mdOwner    = uint_buf[0];
        mc.metadataEntries[i].mdDataType = uint_buf[1];

        // Read the name string
        read_md_string( mc.metadataEntries[i].mdName );

        if( mc.metadataEntries[i].mdDataType == 0 )
        {
            // integer
            FREADI( 1 );
            mc.metadataEntries[i].mdIntValue = uint_buf[0];
        }
        else if( mc.metadataEntries[i].mdDataType == 1 )
        {
            // string
            read_md_string( mc.metadataEntries[i].mdStringValue );
        }
        else if( mc.metadataEntries[i].mdDataType == 2 )
        {
            // double
            FREADD( 1 );
            mc.metadataEntries[i].mdDblValue = dbl_buf[0];
        }
        else if( mc.metadataEntries[i].mdDataType == 3 )
        {
            // int array
            FREADI( 1 );
            mc.metadataEntries[i].mdIntArrayValue.resize( uint_buf[0] );
            FREADI( mc.metadataEntries[i].mdIntArrayValue.size() );
            std::copy( uint_buf.begin(), uint_buf.begin() + mc.metadataEntries[i].mdIntArrayValue.size(),
                       mc.metadataEntries[i].mdIntArrayValue.begin() );
        }
        else if( mc.metadataEntries[i].mdDataType == 4 )
        {
            // double array
            FREADI( 1 );
            mc.metadataEntries[i].mdDblArrayValue.resize( uint_buf[0] );
            FREADD( mc.metadataEntries[i].mdDblArrayValue.size() );
            std::copy( dbl_buf.begin(), dbl_buf.begin() + mc.metadataEntries[i].mdDblArrayValue.size(),
                       mc.metadataEntries[i].mdDblArrayValue.begin() );
        }
        else
            return MB_FAILURE;
    }
    if( debug ) mc.print();

    return MB_SUCCESS;
}

Definition at line 1716 of file Tqdcfr.cpp.

References moab::debug, fileTOC, FREADI(), FSEEK(), MB_SUCCESS, modelEntries, moab::Tqdcfr::FileTOC::modelTableOffset, moab::Tqdcfr::FileTOC::numModels, and uint_buf.

Referenced by load_file().

{
    // Read model entries
    FSEEK( fileTOC.modelTableOffset );
    FREADI( fileTOC.numModels * 6 );
    modelEntries.resize( fileTOC.numModels );
    if( modelEntries.empty() ) return MB_FAILURE;
    std::vector< unsigned int >::iterator int_it = uint_buf.begin();
    for( unsigned int i = 0; i < fileTOC.numModels; i++ )
    {
        modelEntries[i].modelHandle = *int_it++;
        modelEntries[i].modelOffset = *int_it++;
        modelEntries[i].modelLength = *int_it++;
        modelEntries[i].modelType   = *int_it++;
        modelEntries[i].modelOwner  = *int_it++;
        modelEntries[i].modelPad    = *int_it++;
        if( int_it == uint_buf.end() && i != fileTOC.numModels - 1 ) return MB_FAILURE;
        if( debug ) modelEntries[i].print();
    }

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::read_nodes ( const unsigned int  gindex,
Tqdcfr::ModelEntry model,
Tqdcfr::GeomHeader entity 
)

Definition at line 1334 of file Tqdcfr.cpp.

References moab::Interface::add_entities(), beforeEnts, moab::Range::begin(), categoryTag, check_contiguous(), CONVERT_TO_INTS(), cubMOABVertexMap, currVHandleOffset, moab::debug, moab::SequenceManager::DEFAULT_VERTEX_SEQUENCE_SIZE, moab::Range::empty(), moab::Range::end(), ErrorCode, FREADDA(), FREADI(), FSEEK(), geom_categories, geomTag, moab::Interface::get_entities_by_type(), moab::Tqdcfr::MetaDataContainer::get_md_entry(), moab::ReadUtilIface::get_node_coords(), globalIdTag, int_buf, moab::MAX(), MB_SUCCESS, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TYPE_INTEGER, MBVERTEX, mdbImpl, moab::Tqdcfr::MetaDataContainer::MetaDataEntry::mdDataType, moab::Tqdcfr::MetaDataContainer::MetaDataEntry::mdIntArrayValue, moab::Range::merge(), moab::Tqdcfr::MetaDataContainer::metadataEntries, moab::Tqdcfr::ModelEntry::modelOffset, moab::Tqdcfr::GeomHeader::nodeCt, moab::Tqdcfr::ModelEntry::nodeMD, moab::Tqdcfr::GeomHeader::nodeOffset, moab::Range::rbegin(), readUtilIface, RR, moab::Tqdcfr::GeomHeader::setHandle, size, moab::Range::subset_by_type(), moab::subtract(), moab::Interface::tag_get_handle(), moab::Interface::tag_set_data(), and uint_buf.

Referenced by load_file().

{
    if( entity->nodeCt == 0 )
    {
        if( debug ) std::cout << "(no nodes) ";
        return MB_SUCCESS;
    }

    // Get the ids & coords in separate calls to minimize memory usage
    // Position the file
    FSEEK( model->modelOffset + entity->nodeOffset );
    // Get node ids in uint_buf
    FREADI( entity->nodeCt );

    if( debug )
    {
        std::cout << "(";
        for( unsigned int i = 0; i < entity->nodeCt; i++ )
        {
            std::cout << uint_buf[i];
            if( i != entity->nodeCt - 1 ) std::cout << ", ";
        }
        std::cout << ")...";
    }

    // Get a space for reading nodal data directly into MB, and read that data
    EntityHandle vhandle = 0;
    std::vector< double* > arrays;
    readUtilIface->get_node_coords( 3, entity->nodeCt, uint_buf[0], vhandle, arrays,
                                    SequenceManager::DEFAULT_VERTEX_SEQUENCE_SIZE );

    // Get node x's in arrays[0]
    FREADDA( entity->nodeCt, arrays[0] );
    // Get node y's in arrays[1]
    FREADDA( entity->nodeCt, arrays[1] );
    // Get node z's in arrays[2]
    FREADDA( entity->nodeCt, arrays[2] );

    // Add these nodes into the entity's set
    Range dum_range( vhandle, vhandle + entity->nodeCt - 1 );
    ErrorCode result = mdbImpl->add_entities( entity->setHandle, dum_range );
    if( MB_SUCCESS != result ) return result;

    // Check for id contiguity; know that cid's will never be > 32bit, so
    // ids can be unsigned int
    unsigned int max_cid, min_cid;
    int contig;
    check_contiguous( entity->nodeCt, contig, min_cid, max_cid );

    // Compute the offset we get in this batch and compare to any previous one
    long vhandle_offset = vhandle - min_cid;
    if( -1 == currVHandleOffset ) currVHandleOffset = vhandle_offset;

    // In 2 situations we'll need to add/modify a cubit_id -> vhandle map:
    // case A: no map yet, and either this offset different from
    // previous or not contiguous
    if( !cubMOABVertexMap && ( currVHandleOffset != vhandle_offset || !contig ) )
    {
        // Get all vertices, removing ones in this batch
        Range vrange, tmp_range( dum_range );
        result = mdbImpl->get_entities_by_type( 0, MBVERTEX, vrange );RR;
        if( !beforeEnts.empty() ) tmp_range.merge( beforeEnts.subset_by_type( MBVERTEX ) );
        vrange = subtract( vrange, tmp_range );
        // Compute the max cid; map is indexed by cid, so size is max_cid + 1
#define MAX( a, b ) ( ( a ) > ( b ) ? ( a ) : ( b ) )
#define MIN( a, b ) ( ( a ) < ( b ) ? ( a ) : ( b ) )
        // Sanity check that max vhandle is larger than offset
        long new_max = *vrange.rbegin() - currVHandleOffset;
        assert( new_max >= 0 && ( (long)*vrange.begin() ) - currVHandleOffset >= 0 );
        max_cid          = MAX( max_cid, ( (unsigned int)new_max ) );
        cubMOABVertexMap = new std::vector< EntityHandle >( max_cid + 1 );
        // Initialize to zero then put previous vertices into the map
        std::fill( cubMOABVertexMap->begin(), cubMOABVertexMap->end(), 0 );
        Range::iterator rit;
        for( rit = vrange.begin(); rit != vrange.end(); ++rit )
        {
            assert( ( (long)*rit ) - currVHandleOffset >= 0 && ( (long)*rit ) - currVHandleOffset <= max_cid );
            ( *cubMOABVertexMap )[*rit - currVHandleOffset] = *rit;
        }
    }
    // case B: there is a map and we need to resize it
    else if( cubMOABVertexMap && max_cid + 1 > cubMOABVertexMap->size() )
    {
        unsigned int old_size = cubMOABVertexMap->size();
        cubMOABVertexMap->resize( max_cid + 1 );
        std::fill( &( *cubMOABVertexMap )[old_size], &( *cubMOABVertexMap )[0] + cubMOABVertexMap->size(), 0 );
    }

    // OK, we have a map or don't need one
    if( NULL == cubMOABVertexMap )
    {
        // If we're not forward-contiguous (i.e. we're reverse or
        // out-of-order contiguous), re-order coordinates for handles
        // so that they are
        if( -1 == contig || -2 == contig )
        {
            // In case the arrays are large, do each coord separately
            std::vector< double > tmp_coords( entity->nodeCt );
            for( unsigned int j = 0; j < 3; j++ )
            {
                // Permute the coords into new order
                for( unsigned int i = 0; i < entity->nodeCt; i++ )
                {
                    assert( uint_buf[i] >= min_cid && max_cid - uint_buf[i] < entity->nodeCt );
                    tmp_coords[uint_buf[i] - min_cid] = arrays[j][i];
                }
                // Copy the permuted to storage
                std::copy( &tmp_coords[0], &tmp_coords[0] + entity->nodeCt, arrays[j] );
            }
            // Now re-order the ids; either way just go off min, max cid
            for( unsigned int i = 0; i < entity->nodeCt; i++ )
                uint_buf[i] = min_cid + i;
        }
        else if( !contig )
            // Shouldn't get here, since in non-contiguous case map should be there
            assert( false );
    }
    else
    {
        // Put new vertices into the map
        // Now set the new values
        unsigned int* vit   = &uint_buf[0];
        Range::iterator rit = dum_range.begin();
        for( ; rit != dum_range.end(); vit++, ++rit )
        {
            assert( *vit < cubMOABVertexMap->size() );
            ( *cubMOABVertexMap )[*vit] = *rit;
        }
    }

    // No longer need to use uint_buf; convert in-place to ints, so we
    // can assign gid tag
    CONVERT_TO_INTS( entity->nodeCt );
    result = mdbImpl->tag_set_data( globalIdTag, dum_range, &int_buf[0] );
    if( MB_SUCCESS != result ) return result;

    // Set the dimension to at least zero (entity has at least nodes) on the geom tag
    int max_dim = 0;
    result      = mdbImpl->tag_set_data( geomTag, &( entity->setHandle ), 1, &max_dim );
    if( MB_SUCCESS != result ) return result;
    // Set the category tag just in case there're only vertices in this set
    result = mdbImpl->tag_set_data( categoryTag, &entity->setHandle, 1, &geom_categories[0] );
    if( MB_SUCCESS != result ) return result;

    // Get fixed node data and assign
    int md_index = model->nodeMD.get_md_entry( gindex, "FixedNodes" );
    if( -1 == md_index ) return MB_SUCCESS;
    MetaDataContainer::MetaDataEntry* md_entry = &( model->nodeMD.metadataEntries[md_index] );

    std::vector< int > fixed_flags( entity->nodeCt );
    std::fill( fixed_flags.begin(), fixed_flags.end(), 0 );
    if( md_entry->mdDataType != 3 ) return MB_FAILURE;

    for( std::vector< unsigned int >::iterator vit = md_entry->mdIntArrayValue.begin();
         vit != md_entry->mdIntArrayValue.end(); ++vit )
    {
#ifndef NDEBUG
        EntityHandle fixed_v =
            ( cubMOABVertexMap ? ( *cubMOABVertexMap )[*vit] : (EntityHandle)currVHandleOffset + *vit );
        assert( fixed_v >= *dum_range.begin() && fixed_v <= *dum_range.rbegin() );
#endif
        fixed_flags[*vit - *dum_range.begin()] = 1;
    }

    Tag fixedFlagTag;
    int dum_val = 0;
    result      = mdbImpl->tag_get_handle( "NodeFixed", 1, MB_TYPE_INTEGER, fixedFlagTag, MB_TAG_SPARSE | MB_TAG_CREAT,
                                      &dum_val );
    if( MB_SUCCESS != result ) return result;
    result = mdbImpl->tag_set_data( fixedFlagTag, dum_range, &fixed_flags[0] );

    return result;
}
ErrorCode moab::Tqdcfr::read_nodeset ( const unsigned int  nsindex,
Tqdcfr::ModelEntry model,
Tqdcfr::NodesetHeader nodeseth 
)

Definition at line 569 of file Tqdcfr.cpp.

References char_buf, CONVERT_TO_INTS(), moab::debug, DIRICHLET_SET_TAG_NAME, ErrorCode, FREADC(), FREADCA(), FREADI(), FSEEK(), get_entities(), get_names(), int_buf, MB_SUCCESS, MB_TAG_BYTES, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TAG_VARLEN, MB_TYPE_OPAQUE, mdbImpl, moab::Tqdcfr::NodesetHeader::memOffset, moab::Tqdcfr::NodesetHeader::memTypeCt, moab::Tqdcfr::ModelEntry::modelOffset, moab::Tqdcfr::ModelEntry::nodesetMD, moab::Tqdcfr::NodesetHeader::print(), put_into_set(), moab::Tqdcfr::NodesetHeader::setHandle, moab::Interface::tag_get_handle(), moab::Interface::tag_set_by_ptr(), and uint_buf.

Referenced by load_file().

{
    if( nodeseth->memTypeCt == 0 ) return MB_SUCCESS;

    // Position file
    FSEEK( model->modelOffset + nodeseth->memOffset );

    // Read ids for each entity type
    unsigned int this_type, num_ents;  //, uid;
    std::vector< char > bc_data;
    unsigned int num_read = 0;
    std::vector< EntityHandle > ns_entities, excl_entities;
    for( unsigned int i = 0; i < nodeseth->memTypeCt; i++ )
    {
        // Get how many and what type
        FREADI( 2 );
        num_read += 2 * sizeof( int );
        this_type = uint_buf[0];
        num_ents  = uint_buf[1];

        // Now get the ids
        FREADI( num_ents );
        num_read += sizeof( int );
        CONVERT_TO_INTS( num_ents );

        ErrorCode result = get_entities( this_type + 2, &int_buf[0], num_ents, ns_entities, excl_entities );
        if( MB_SUCCESS != result ) return result;
    }
    // Check for more data
    if( num_read < nodeseth->nsLength )
    {
        FREADC( 2 );  // num_read += 2;
        if( char_buf[0] == 'i' && char_buf[1] == 'd' )
        {
            FREADI( 1 );  // num_read += sizeof(int);
            // uid = int_buf[0];
        }
        else
        {
            if( char_buf[0] == 'b' && char_buf[1] == 'c' )
            {
                FREADI( 1 );  // num_read += sizeof(int);
                int num_bcs = uint_buf[0];
                bc_data.resize( num_bcs );
                FREADCA( num_bcs, &bc_data[0] );  // num_read += num_bcs;
            }
        }
    }

    if( debug )
    {
        nodeseth->print();
        if( !bc_data.empty() )
        {
            std::cout << "bc_data = ";
            std::vector< char >::iterator vit = bc_data.begin();
            for( ; vit != bc_data.end(); ++vit )
            {
                std::cout << std::hex << (int)( (unsigned char)*vit ) << " ";
            }
            std::cout << ": ";
            vit = bc_data.begin();
            for( ; vit != bc_data.end(); ++vit )
            {
                std::cout << *vit;
            }
            std::cout << std::endl;
        }
    }

    // And put entities into this nodeset's set
    ErrorCode result = put_into_set( nodeseth->setHandle, ns_entities, excl_entities );
    if( MB_SUCCESS != result ) return result;

    result = get_names( model->nodesetMD, nsindex, nodeseth->setHandle );
    if( MB_SUCCESS != result ) return result;

    const int def_bc_data_len = 0;
    std::string tag_name      = std::string( DIRICHLET_SET_TAG_NAME ) + "__BC_DATA";
    Tag nbc_data;
    result = mdbImpl->tag_get_handle( tag_name.c_str(), def_bc_data_len, MB_TYPE_OPAQUE, nbc_data,
                                      MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES | MB_TAG_VARLEN, NULL );
    if( MB_SUCCESS != result ) return result;
    void const* tag_data[] = { ( bc_data.empty() ) ? NULL : &( bc_data[0] ) };
    int tag_size           = bc_data.size();
    result                 = mdbImpl->tag_set_by_ptr( nbc_data, &nodeseth->setHandle, 1, tag_data, &tag_size );
    if( MB_SUCCESS != result ) return result;

    return result;
}
ErrorCode moab::Tqdcfr::read_sideset ( const unsigned int  ssindex,
const double  data_version,
Tqdcfr::ModelEntry model,
Tqdcfr::SidesetHeader sideseth 
)

Definition at line 660 of file Tqdcfr.cpp.

References char_buf, CONVERT_TO_INTS(), dbl_buf, moab::debug, ErrorCode, FREADC(), FREADCA(), FREADD(), FREADI(), FREADIA(), FSEEK(), get_entities(), get_names(), int_buf, MB_SUCCESS, MB_TAG_BYTES, MB_TAG_CREAT, MB_TAG_SPARSE, MB_TAG_VARLEN, MB_TYPE_DOUBLE, MB_TYPE_OPAQUE, mdbImpl, moab::Tqdcfr::SidesetHeader::memCt, moab::Tqdcfr::SidesetHeader::memOffset, moab::Tqdcfr::SidesetHeader::memTypeCt, moab::Tqdcfr::ModelEntry::modelOffset, NEUMANN_SET_TAG_NAME, moab::Tqdcfr::SidesetHeader::numDF, moab::Tqdcfr::SidesetHeader::print(), process_sideset_10(), process_sideset_11(), moab::Tqdcfr::SidesetHeader::setHandle, moab::Tqdcfr::ModelEntry::sidesetMD, moab::Interface::tag_get_handle(), moab::Interface::tag_set_by_ptr(), and uint_buf.

Referenced by load_file().

{
    if( sideseth->memCt == 0 ) return MB_SUCCESS;

    ErrorCode result;

    // Position file
    FSEEK( model->modelOffset + sideseth->memOffset );

    // Read ids for each entity type
    unsigned int this_type, num_ents, sense_size;

    std::vector< char > bc_data;
    unsigned int num_read = 0;  //, uid;
    std::vector< EntityHandle > ss_entities, excl_entities;
    if( data_version <= 1.0 )
    {
        for( unsigned int i = 0; i < sideseth->memTypeCt; i++ )
        {
            // Get how many and what type
            FREADI( 3 );
            num_read += 3 * sizeof( int );
            this_type  = uint_buf[0];
            num_ents   = uint_buf[1];
            sense_size = uint_buf[2];

            // Now get the ids
            FREADI( num_ents );
            num_read += sizeof( int );
            CONVERT_TO_INTS( num_ents );

            result = get_entities( this_type + 2, &int_buf[0], num_ents, ss_entities, excl_entities );
            if( MB_SUCCESS != result ) return result;

            if( sense_size == 1 )
            {
                // Byte-size sense flags; make sure read ends aligned...
                unsigned int read_length = ( num_ents / 8 ) * 8;
                if( read_length < num_ents ) read_length += 8;
                FREADC( read_length );
                num_read += read_length;
            }
            else if( sense_size == 2 )
            {
                // Int-size sense flags
                FREADI( num_ents );
                num_read += sizeof( int );
            }

            // Now do something with them...
            process_sideset_10( this_type, num_ents, sense_size, ss_entities, sideseth );
        }
    }
    else
    {
        for( unsigned int i = 0; i < sideseth->memTypeCt; i++ )
        {
            // Get how many and what type
            FREADI( 1 );
            num_read += sizeof( int );
            num_ents = uint_buf[0];

            // Get the types, and ids
            std::vector< unsigned int > mem_types( num_ents ), mem_ids( num_ents );
            FREADIA( num_ents, &mem_types[0] );
            num_read += num_ents * sizeof( int );
            FREADI( num_ents );
            num_read += sizeof( int );

            result = get_entities( &mem_types[0], &int_buf[0], num_ents, false, ss_entities );
            if( MB_SUCCESS != result ) return result;

            // Byte-size sense flags; make sure read ends aligned...
            unsigned int read_length = ( num_ents / 8 ) * 8;
            if( read_length < num_ents ) read_length += 8;
            FREADC( read_length );
            num_read += read_length;

            // wrt entities
            FREADI( 1 );
            num_read += sizeof( int );
            int num_wrts = uint_buf[0];
            FREADI( num_wrts );
            num_read += num_wrts * sizeof( int );

            result = process_sideset_11( ss_entities, num_wrts, sideseth );
            if( MB_SUCCESS != result ) return result;
        }
    }

    // Now set the dist factors
    if( sideseth->numDF > 0 )
    {
        // Have to read dist factors
        FREADD( sideseth->numDF );
        num_read += sideseth->numDF * sizeof( double );
        Tag distFactorTag;
        result = mdbImpl->tag_get_handle( "distFactor", 0, MB_TYPE_DOUBLE, distFactorTag,
                                          MB_TAG_SPARSE | MB_TAG_VARLEN | MB_TAG_CREAT );
        if( MB_SUCCESS != result ) return result;
        const void* dist_data = &dbl_buf[0];
        const int dist_size   = sideseth->numDF;
        result = mdbImpl->tag_set_by_ptr( distFactorTag, &sideseth->setHandle, 1, &dist_data, &dist_size );
        if( MB_SUCCESS != result ) return result;
    }

    // Check for more data
    if( data_version > 1.0 && num_read < sideseth->ssLength )
    {
        FREADC( 2 );  // num_read += 2;
        if( char_buf[0] == 'i' && char_buf[1] == 'd' )
        {
            FREADI( 1 );  // num_read += sizeof(int);
            // uid = int_buf[0];
        }
        else
        {
            // Check for bc_data
            if( char_buf[0] == 'b' && char_buf[1] == 'c' )
            {
                FREADI( 1 );  // num_read += sizeof(int);
                int num_bcs = uint_buf[0];
                bc_data.resize( num_bcs );
                FREADCA( num_bcs, &bc_data[0] );  // num_read += num_bcs;
            }
        }
    }

    if( debug )
    {
        sideseth->print();
        if( !bc_data.empty() )
        {
            std::cout << "bc_data = ";
            std::vector< char >::iterator vit = bc_data.begin();
            for( ; vit != bc_data.end(); ++vit )
            {
                std::cout << std::hex << (int)( (unsigned char)*vit ) << " ";
            }
            std::cout << ": ";
            vit = bc_data.begin();
            for( ; vit != bc_data.end(); ++vit )
            {
                std::cout << *vit;
            }
            std::cout << std::endl;
        }
    }

    result = get_names( model->sidesetMD, ssindex, sideseth->setHandle );
    if( MB_SUCCESS != result ) return result;

    const int def_bc_data_len = 0;
    std::string tag_name      = std::string( NEUMANN_SET_TAG_NAME ) + "__BC_DATA";
    Tag nbc_data;
    result = mdbImpl->tag_get_handle( tag_name.c_str(), def_bc_data_len, MB_TYPE_OPAQUE, nbc_data,
                                      MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES | MB_TAG_VARLEN, NULL );
    if( MB_SUCCESS != result ) return result;
    void const* tag_data[] = { ( bc_data.empty() ) ? NULL : &( bc_data[0] ) };
    int tag_size           = bc_data.size();
    result                 = mdbImpl->tag_set_by_ptr( nbc_data, &sideseth->setHandle, 1, tag_data, &tag_size );
    if( MB_SUCCESS != result ) return result;

    return MB_SUCCESS;
}
ErrorCode moab::Tqdcfr::read_tag_values ( const char *  file_name,
const char *  tag_name,
const FileOptions opts,
std::vector< int > &  tag_values_out,
const SubsetList subset_list = 0 
) [virtual]

Read tag values from a file.

Read the list if all integer tag values from the file for a tag that is a single integer value per entity.

Parameters:
file_nameThe file to read.
tag_nameThe tag for which to read values
tag_values_outOutput: The list of tag values.
subset_listAn array of tag name and value sets specifying the subset of the file to read. If multiple tags are specified, the sets that match all tags (intersection) should be read.
subset_list_lengthThe length of the 'subset_list' array.

Implements moab::ReaderIface.

Definition at line 287 of file Tqdcfr.cpp.

References MB_NOT_IMPLEMENTED.

{
    return MB_NOT_IMPLEMENTED;
}
ErrorCode moab::Tqdcfr::reset_record ( AcisRecord this_record) [private]

Definition at line 2658 of file Tqdcfr.cpp.

References moab::Tqdcfr::AcisRecord::att_ent_num, moab::Tqdcfr::AcisRecord::att_next, moab::Tqdcfr::AcisRecord::att_prev, moab::Tqdcfr::AcisRecord::att_string, moab::Tqdcfr::AcisRecord::entity, moab::Tqdcfr::AcisRecord::first_attrib, MB_SUCCESS, moab::Tqdcfr::AcisRecord::processed, moab::Tqdcfr::AcisRecord::rec_type, and UNKNOWN.

Referenced by read_acis_records().

{
    this_record.rec_type = Tqdcfr::UNKNOWN;
    this_record.att_string.clear();
    this_record.first_attrib = this_record.att_prev = this_record.att_next = this_record.att_ent_num = -1;
    this_record.processed                                                                            = false;
    this_record.entity                                                                               = 0;

    return MB_SUCCESS;
}
EntityType moab::Tqdcfr::type_from_cub_type ( const unsigned int  cub_type,
const unsigned int  nodes_per_elem 
)

Member Data Documentation

FILE* moab::Tqdcfr::acisDumpFile [private]

Definition at line 341 of file Tqdcfr.hpp.

Referenced by parse_acis_attribs(), and read_acis_records().

Definition at line 270 of file Tqdcfr.hpp.

Referenced by load_file(), and read_nodes().

const int moab::Tqdcfr::cub_elem_num_verts [static, private]
Initial value:
 { 1,                    
                                           2, 2, 3,              
                                           2, 2, 3,              
                                           2, 2, 3,              
                                           2,                    
                                           3, 3, 6, 7,           
                                           3, 3, 6, 7,           
                                           4, 4, 8, 9,           
                                           4, 4, 5, 8,  9,       
                                           4, 4, 8, 10, 14,      
                                           5, 5, 8, 13, 18,      
                                           8, 8, 9, 20, 27, 12,  
                                           0 }

Definition at line 414 of file Tqdcfr.hpp.

Referenced by read_block(), and moab::Tqdcfr::BlockHeader::read_info_header().

const int moab::Tqdcfr::cub_elem_num_verts_len = sizeof( cub_elem_num_verts ) / sizeof( cub_elem_num_verts[0] ) [static, private]

Definition at line 415 of file Tqdcfr.hpp.

Referenced by moab::Tqdcfr::BlockHeader::read_info_header().

Definition at line 265 of file Tqdcfr.hpp.

Referenced by FREADCA(), FREADDA(), FREADIA(), FSEEK(), load_file(), and read_file_header().

Definition at line 272 of file Tqdcfr.hpp.

std::vector< EntityHandle >* moab::Tqdcfr::cubMOABVertexMap [private]

Definition at line 344 of file Tqdcfr.hpp.

Referenced by get_mesh_entities(), read_elements(), read_nodes(), Tqdcfr(), and ~Tqdcfr().

Definition at line 271 of file Tqdcfr.hpp.

Referenced by read_elements(), and Tqdcfr().

std::vector< double > moab::Tqdcfr::dbl_buf

Definition at line 280 of file Tqdcfr.hpp.

Referenced by FREADD(), read_block(), read_meta_data(), and read_sideset().

const char moab::Tqdcfr::geom_categories = { "Vertex\0", "Curve\0", "Surface\0", "Volume\0" } [static, private]

Definition at line 339 of file Tqdcfr.hpp.

Referenced by read_elements(), and read_nodes().

const EntityType moab::Tqdcfr::group_type_to_mb_type [static, private]

Definition at line 322 of file Tqdcfr.hpp.

Definition at line 267 of file Tqdcfr.hpp.

Referenced by find_model(), load_file(), read_acis_records(), and read_model_entries().

Definition at line 268 of file Tqdcfr.hpp.

Referenced by load_file().

const EntityType moab::Tqdcfr::mp_type_to_mb_type [static, private]
Initial value:

mapping from mesh packet type to moab type

Definition at line 418 of file Tqdcfr.hpp.

Referenced by read_elements(), and moab::Tqdcfr::GeomHeader::read_info_header().

Definition at line 326 of file Tqdcfr.hpp.

Referenced by read_elements().

Definition at line 324 of file Tqdcfr.hpp.

Referenced by process_record().

Definition at line 276 of file Tqdcfr.hpp.

Referenced by FREADDA(), FREADIA(), and read_file_header().

List of all members.


The documentation for this class was generated from the following files:
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