MOAB: Mesh Oriented datABase
(version 5.4.1)
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00001 /** MOAB Damsel file reader 00002 * For description of the Damsel-MOAB data model mapping, see WriteDamsel.cpp. 00003 * 00004 */ 00005 00006 #include "moab/ParallelComm.hpp" 00007 00008 #include "ReadDamsel.hpp" 00009 00010 #include <cassert> 00011 #include "moab/Interface.hpp" 00012 #include "moab/Core.hpp" 00013 #include "moab/Range.hpp" 00014 #include "moab/Error.hpp" 00015 #include "moab/ReadUtilIface.hpp" 00016 #include "moab/FileOptions.hpp" 00017 #include "MBTagConventions.hpp" 00018 #include "EntitySequence.hpp" 00019 #include "Internals.hpp" 00020 #include "DenseTag.hpp" 00021 00022 namespace moab 00023 { 00024 00025 ReaderIface* ReadDamsel::factory( Interface* iface ) 00026 { 00027 return new ReadDamsel( iface ); 00028 } 00029 00030 ReadDamsel::ReadDamsel( Interface* impl ) 00031 : mbImpl( impl ), readMeshIface( NULL ), nativeParallel( false ), myPcomm( NULL ), mGlobalIdTag( 0 ), dU() 00032 { 00033 init(); 00034 } 00035 00036 ReadDamsel::~ReadDamsel() 00037 { 00038 if( readMeshIface ) mbImpl->release_interface( readMeshIface ); 00039 00040 DMSLlib_finalize( dU.dmslLib ); 00041 } 00042 00043 ErrorCode ReadDamsel::init() 00044 { 00045 mbImpl->query_interface( readMeshIface ); 00046 assert( readMeshIface ); 00047 00048 return MB_SUCCESS; 00049 } 00050 00051 ErrorCode ReadDamsel::parse_options( const FileOptions& opts, bool& parallel ) 00052 { 00053 // Handle parallel options 00054 bool use_mpio = ( MB_SUCCESS == opts.get_null_option( "USE_MPIO" ) ); 00055 ErrorCode rval = opts.match_option( "PARALLEL", "READ_PART" ); 00056 parallel = ( rval != MB_ENTITY_NOT_FOUND ); 00057 nativeParallel = ( rval == MB_SUCCESS ); 00058 if( use_mpio && !parallel ) 00059 { 00060 MB_SET_ERR( MB_NOT_IMPLEMENTED, "'USE_MPIO' option specified w/out 'PARALLEL' option" ); 00061 } 00062 00063 return MB_SUCCESS; 00064 } 00065 00066 // ASSUMPTIONS: 00067 // Partition collection is a *flat* collection of handles for entities and other collections that 00068 // will be represented on a part 00069 00070 ErrorCode ReadDamsel::load_file( const char* filename, 00071 const EntityHandle* file_set, 00072 const FileOptions& opts, 00073 const ReaderIface::SubsetList* subset_list, 00074 const Tag* file_id_tag ) 00075 { 00076 ErrorCode rval; 00077 00078 rval = parse_options( opts, nativeParallel ); 00079 if( MB_SUCCESS != rval ) return rval; 00080 00081 // Initialize damsel 00082 dU.dmslLib = DMSLlib_init(); 00083 00084 // Create a damsel model 00085 dU.dmslModel = 00086 DMSLmodel_create( sizeof( EntityHandle ) == 8 ? DAMSEL_HANDLE_TYPE_HANDLE64 : DAMSEL_HANDLE_TYPE_HANDLE32 ); 00087 00088 // Model attach - need model id from make model, filename 00089 #ifdef MOAB_HAVE_MPI 00090 MPI_Comm comm = MPI_COMM_WORLD; 00091 if( nativeParallel ) 00092 { 00093 comm = myPcomm->proc_config().proc_comm(); 00094 } 00095 #endif 00096 00097 damsel_err_t err; 00098 err = DMSLmodel_attach( dU.dmslModel, filename, comm, NULL ); 00099 CHK_DMSL_ERR( err, "DMSLmodel_attach failed" ); 00100 err = DMSLmodel_populate( dU.dmslModel ); 00101 CHK_DMSL_ERR( err, "DMSLmodel_populate failed" ); 00102 00103 // STEP 0: GET COLLECTION, TAG, ENTITY INFOS FOR GLOBAL MODEL 00104 int num_containers = 0, num_tag_infos = 0, num_ent_infos = 0; 00105 DMSLmodel_get_tuple_count( dU.dmslModel, &num_containers, &num_tag_infos ); 00106 num_ent_infos = DMSLmodel_get_entity_count( dU.dmslModel ); 00107 int num_coll_infos = DMSLmodel_get_collection_count( dU.dmslModel ); 00108 CHK_DMSL_ERR( err, "DMSLmodel_get_collection_count failed" ); 00109 if( -1 == num_containers || -1 == num_tag_infos || -1 == num_ent_infos ) 00110 MB_SET_ERR( MB_FAILURE, "Bad count for containers/tags/ents" ); 00111 00112 std::vector< damsel_entity_buf_type > ent_infos( num_ent_infos ); 00113 std::vector< damsel_collection_buf_type > coll_infos( num_coll_infos ); 00114 std::vector< damsel_tag_buf_type > tag_infos( num_tag_infos ); 00115 std::vector< damsel_container_buf_type > cont_infos( num_containers ); 00116 err = DMSLmodel_get_entity_infos( dU.dmslModel, &ent_infos[0] ); 00117 CHK_DMSL_ERR( err, "Failure getting entity infos" ); 00118 err = DMSLmodel_get_collection_infos( dU.dmslModel, &coll_infos[0] ); 00119 CHK_DMSL_ERR( err, "Failure getting collection infos" ); 00120 err = DMSLmodel_get_tag_infos( dU.dmslModel, &tag_infos[0] ); 00121 CHK_DMSL_ERR( err, "Failure getting tag infos" ); 00122 err = DMSLmodel_get_container_infos( dU.dmslModel, &cont_infos[0] ); 00123 CHK_DMSL_ERR( err, "Failure getting container infos" ); 00124 00125 // Create MOAB-side tags for all damsel tags except pre-defined ones 00126 rval = process_tags( tag_infos );MB_CHK_SET_ERR( rval, "Error processing tags" ); 00127 00128 /* 00129 if (nativeParallel) { 00130 // STEP 1: GET COLLECTION(S) REPRESENTING PARTITION: 00131 // Input: tag name, optionally value; 00132 // Output: container with file-side handles of collections satisfying those criteria 00133 // - Get all handles/values for tag 00134 // - Select handles matching criteria for tag value (will be collection handles) 00135 std::string partn_tag_name("PARALLEL_PARTITION"); 00136 damsel_handle partn_tag = DMSLselect_tag_by_name(dU.dmslModel, partn_tag_name.c_str()); 00137 // Get all the parts with that tag regardless of value 00138 damsel_container part_handles = DMSLselect_handles_with_values(dU.dmslModel, partn_tag); 00139 00140 // STEP 2: GET HANDLES FOR TAGS WE NEED FOR THIS READER: 00141 // - "SET_CHARACTERISTIC" 00142 damsel_handle setchar_tag = DMSLselect_tag_by_name(dU.dmslModel, "SET_CHARACTERISTIC"); 00143 // - "PARENT_LIST" 00144 //damsel_handle plist_tag = DMSLselect_tag_by_name(dU.dmslModel, "PARENT_LIST"); 00145 // - "CHILD_LIST" 00146 //damsel_handle clist_tag = DMSLselect_tag_by_name(dU.dmslModel, "CHILD_LIST"); 00147 00148 // STEP 3: GET VALUES FOR "SET_CHARACTERISTIC" TAG ON PARTITION COLLECTIONS, 00149 // GET VECTOR- OR SET-TYPE FLAGS FOR PARTITION COLLECTIONS 00150 // (gives tracking flag for moab) 00151 int num_handles = DMSLcontainer_count(part_handles); 00152 std::vector<unsigned> char_tagvals(num_handles); 00153 // Map the set chars 00154 err = DMSLmodel_map_tag(&char_tagvals[0], part_handles, &setchar_tag);CHK_DMSL_ERR(err, 00155 "Problem calling DMSLmodel_map_tag"); 00156 00157 // Execute the transfer 00158 err = DMSLmodel_transfer_sync(dU.dmslModel, DAMSEL_TRANSFER_TYPE_READ);CHK_DMSL_ERR(err, 00159 "Problem calling DMSLmodel_transfer_sync"); 00160 00161 // STEP 4: READ/PROCESS PARTITION COLLECTION(S) 00162 // Decide the handles I am responsible using round-robin for now 00163 // - GET TYPE, CONTENTS OF COLLECTION CONTENTS CONTAINER 00164 // - Allocate moab-side container (using count from container) 00165 // - MAP storage TO CONTAINER 00166 // - EXECUTE 00167 // ==> have list of all handles (entities + collections) represented on this proc 00168 00169 int tmp_num = num_handles / proc_size, extra = num_handles % proc_size; 00170 if (extra) tmp_num++; 00171 int my_num_handles = tmp_num; 00172 if (proc_rank >= extra) my_num_handles--; 00173 int first_ind = std::min(proc_rank, extra) * tmp_num + 00174 std::max(proc_rank - extra, 0) * (tmp_num - 1); 00175 00176 // - Create moab entity sets for partition collection(s) 00177 EntityHandle start_handle; 00178 rval = readMeshIface->create_entity_sets(my_num_handles, &char_tagvals[first_ind], 0, 00179 start_handle);MB_CHK_SET_ERR(rval, "Problem creating entity sets"); 00180 } 00181 else { 00182 */ 00183 // Initialize just by entity; each call to process_ent_info will: 00184 // a. Create moab-side representation to read into 00185 // b. Map those handles to damsel handles 00186 // c. Map coords / connectivity storage to damsel equivalent 00187 // d. For each tag, map moab storage to damsel storage 00188 std::vector< damsel_entity_buf_type >::iterator eiit; 00189 00190 // Process verts info first 00191 for( eiit = ent_infos.begin(); eiit != ent_infos.end(); ++eiit ) 00192 { 00193 if( ( *eiit ).entity_type == DAMSEL_ENTITY_TYPE_VERTEX ) 00194 { 00195 rval = process_ent_info( *eiit );MB_CHK_ERR( rval ); 00196 } 00197 } 00198 00199 for( eiit = ent_infos.begin(); eiit != ent_infos.end(); ++eiit ) 00200 { 00201 if( ( *eiit ).entity_type != DAMSEL_ENTITY_TYPE_VERTEX ) 00202 { 00203 rval = process_ent_info( *eiit );MB_CHK_ERR( rval ); 00204 } 00205 } 00206 00207 /* 00208 } 00209 00210 // Process collections 00211 rval = process_coll_infos(coll_infos);MB_CHK_ERR(rval); 00212 00213 // STEP 5: Process into list of local info structs, each represents file-side struct and 00214 // portion of that struct 00215 // ASSUMPTION: Each local info struct represents single entity type & # vertices or collection 00216 00217 // STEP 6: For each local info struct: 00218 00219 // STEP 6b: READ CONTAINER INTO LOCAL BUFFER 00220 // STEP 6c: Create app representation of entities/vertices/collection, and damsel container 00221 for them, 00222 // and MAP APP HANDLE CONTAINER TO DAMSEL CONTAINER 00223 // STEP 6d: Process vertices/entities/collection 00224 // 6d1: If vertices, continue 00225 // 6d2: If entities: 00226 // - MAP LOCAL CONNECTIVITY REP'N TO DAMSEL (might be tag, don't know yet) 00227 // 6d3: If collection: 00228 // - (everything in STEP 4 for this collection except for EXECUTE) 00229 // - might need to filter out things not represented on this rank 00230 // 6d4: If sparse tag: 00231 // - Create app-side representation of sparse tag 00232 // - READ CONTAINER OF MODEL HANDLES INTO LOCAL BUFFER 00233 // - Allocate app-side storage for tag values 00234 // - MAP APP STORAGE TO MODEL TAG + (implicit?) CONTAINER 00235 00236 // STEP 6e: Process dense tags for the local info struct; for each dense tag: 00237 // - Get app tag handle for model tag handle 00238 // - Get app storage for app tag handle + container 00239 // - MAP APP STORAGE TO MODEL TAG + CONTAINER 00240 00241 // STEP 7: EXECUTE 00242 // - Assign all mapped data 00243 // - Translate all damsel handles to app handles 00244 // uninit damsel 00245 00246 */ 00247 00248 return MB_SUCCESS; 00249 } 00250 00251 ErrorCode ReadDamsel::read_tag_values( const char* file_name, 00252 const char* tag_name, 00253 const FileOptions& opts, 00254 std::vector< int >& tag_values_out, 00255 const SubsetList* subset_list ) 00256 { 00257 return MB_FAILURE; 00258 } 00259 00260 ErrorCode ReadDamsel::process_tags( std::vector< damsel_tag_buf_type >& tag_infos ) 00261 { 00262 Tag tagh; 00263 ErrorCode rval = MB_SUCCESS, tmp_rval; 00264 for( std::vector< damsel_tag_buf_type >::iterator tit = tag_infos.begin(); tit != tag_infos.end(); ++tit ) 00265 { 00266 if( DamselUtil::dtom_data_type[( *tit ).tag_datatype] == MB_TYPE_OPAQUE ) 00267 { 00268 std::cout << "Damsel reader encountered opaque tag." << std::endl; 00269 continue; 00270 } 00271 00272 tmp_rval = mbImpl->tag_get_handle( ( *tit ).name, 1, DamselUtil::dtom_data_type[( *tit ).tag_datatype], tagh, 00273 MB_TAG_CREAT | MB_TAG_DENSE ); 00274 if( MB_SUCCESS != tmp_rval ) 00275 rval = tmp_rval; 00276 else 00277 { 00278 dU.tagMap.push_back( DamselUtil::tinfo( tagh, 0, MB_TAG_DENSE ) ); 00279 // Also store predefined tags specially... 00280 if( !strncmp( ( *tit ).name, "mbdmsl_", 7 ) ) 00281 { 00282 // Predefined tag name, store the handle 00283 if( !strcmp( ( *tit ).name, "mbdmsl_XCOORDS" ) ) 00284 dU.xcoordsTag = dU.tagMap.back(); 00285 else if( !strcmp( ( *tit ).name, "mbdmsl_YCOORDS" ) ) 00286 { 00287 dU.ycoordsTag = dU.tagMap.back(); 00288 } 00289 else if( !strcmp( ( *tit ).name, "mbdmsl_ZCOORDS" ) ) 00290 { 00291 dU.zcoordsTag = dU.tagMap.back(); 00292 } 00293 else if( !strcmp( ( *tit ).name, "mbdmsl_COLL_FLAGS" ) ) 00294 { 00295 dU.collFlagsTag = dU.tagMap.back(); 00296 } 00297 else if( !strcmp( ( *tit ).name, "mbdmsl_PARENTS" ) ) 00298 { 00299 dU.parentsTag = dU.tagMap.back(); 00300 } 00301 else if( !strcmp( ( *tit ).name, "mbdmsl_CHILDREN" ) ) 00302 { 00303 dU.childrenTag = dU.tagMap.back(); 00304 } 00305 else 00306 { 00307 rval = MB_FAILURE; 00308 continue; 00309 } 00310 } 00311 } 00312 } 00313 00314 return rval; 00315 } 00316 00317 ErrorCode ReadDamsel::process_ent_info( const damsel_entity_buf_type& einfo ) 00318 { 00319 // Create this chunk of entities 00320 EntityHandle *connect, start_handle; 00321 ErrorCode rval; 00322 damsel_err_t err; 00323 damsel_container app_cont; 00324 Range these_ents; 00325 00326 // Check that there's only one contiguous run of file-side handles, fail if there isn't 00327 #ifndef NDEBUG 00328 Range fside_handles; 00329 rval = DamselUtil::container_to_range( dU.dmslModel, const_cast< damsel_container& >( einfo.entity_container ), 00330 fside_handles ); 00331 if( MB_SUCCESS != rval || fside_handles.size() != einfo.count || fside_handles.psize() != 1 ) return MB_FAILURE; 00332 #endif 00333 00334 if( einfo.entity_type != DAMSEL_ENTITY_TYPE_VERTEX ) 00335 { 00336 // Create the moab entities 00337 rval = readMeshIface->get_element_connect( einfo.count, einfo.vertices_per_entity, 00338 DamselUtil::dtom_entity_type[einfo.entity_type], 0, start_handle, 00339 connect );MB_CHK_ERR( rval ); 00340 these_ents.insert( start_handle, start_handle + einfo.count - 1 ); 00341 00342 // Create an app-side sequence and map to file-side container 00343 app_cont = DMSLcontainer_create_sequence( dU.dmslModel, einfo.count, start_handle, 1 ); 00344 err = DMSLmodel_map_handles( app_cont, einfo.entity_container ); 00345 CHK_DMSL_ERR( err, "Error returned mapping entity handles" ); 00346 00347 // Map connectivity 00348 assert( DMSLcontainer_count( einfo.vertex_container ) == (int)( einfo.vertices_per_entity * einfo.count ) ); 00349 rval = get_contents( dU.dmslModel, einfo.vertex_container, connect );MB_CHK_SET_ERR( rval, "Error returned mapping connectivity" ); 00350 } 00351 else 00352 { 00353 // Get the number of coordinate arrays 00354 int num_ctags = 0; 00355 damsel_handle xcoord_dtag = DMSLselect_tag_by_name( dU.dmslModel, "mbdmsl_XCOORDS" ); 00356 if( xcoord_dtag ) num_ctags++; 00357 damsel_handle ycoord_dtag = DMSLselect_tag_by_name( dU.dmslModel, "mbdmsl_YCOORDS" ); 00358 if( ycoord_dtag ) num_ctags++; 00359 damsel_handle zcoord_dtag = DMSLselect_tag_by_name( dU.dmslModel, "mbdmsl_ZCOORDS" ); 00360 if( zcoord_dtag ) num_ctags++; 00361 00362 // Should have one vertex per entity 00363 assert( einfo.vertices_per_entity == 1 ); 00364 std::vector< double* > coord_arrays; 00365 rval = readMeshIface->get_node_coords( num_ctags, einfo.count, 0, start_handle, coord_arrays );MB_CHK_ERR( rval ); 00366 00367 these_ents.insert( start_handle, start_handle + einfo.count - 1 ); 00368 00369 // Create an app-side sequence and map to file-side container 00370 app_cont = DMSLcontainer_create_sequence( dU.dmslModel, start_handle, einfo.count, 1 ); 00371 err = DMSLmodel_map_handles( app_cont, einfo.entity_container ); 00372 CHK_DMSL_ERR( err, "Trouble mapping entity handles" ); 00373 00374 // Map the coords storage 00375 if( xcoord_dtag != 0 ) 00376 { 00377 err = DMSLmodel_map_tag( coord_arrays[0], app_cont, (damsel_handle_ptr)&dU.xcoordsTag.mTagh ); 00378 CHK_DMSL_ERR( err, "Trouble mapping x coordinate tag" ); 00379 } 00380 if( ycoord_dtag != 0 ) 00381 { 00382 err = DMSLmodel_map_tag( coord_arrays[1], app_cont, (damsel_handle_ptr)&dU.ycoordsTag.mTagh ); 00383 CHK_DMSL_ERR( err, "Trouble mapping y coordinate tag" ); 00384 } 00385 if( zcoord_dtag != 0 ) 00386 { 00387 err = DMSLmodel_map_tag( coord_arrays[2], app_cont, (damsel_handle_ptr)&dU.zcoordsTag.mTagh ); 00388 CHK_DMSL_ERR( err, "Trouble mapping z coordinate tag" ); 00389 } 00390 } 00391 00392 // Save mapping from moab entity to einfo 00393 dmHandleRMap.insert( DMSLcontainer_handle_at_position( einfo.entity_container, 0 ), start_handle, einfo.count ); 00394 00395 rval = process_entity_tags( einfo.tag_count, einfo.tag_handle_container, app_cont, these_ents ); 00396 00397 return rval; 00398 } 00399 00400 ErrorCode ReadDamsel::process_entity_tags( int count, 00401 damsel_container tag_container, 00402 damsel_container app_cont, 00403 Range& these_ents ) 00404 { 00405 // Process tags on these entities 00406 ErrorCode rval = MB_SUCCESS; 00407 for( int i = 0; i < count; i++ ) 00408 { 00409 damsel_handle dtagh = DMSLcontainer_handle_at_position( tag_container, i ); 00410 00411 // Don't do conventional tags here 00412 std::vector< DamselUtil::tinfo >::iterator vit = 00413 std::find_if( dU.tagMap.begin(), dU.tagMap.end(), DamselUtil::DtagP< DamselUtil::tinfo >( dtagh ) ); 00414 00415 if( ( *vit ).tagType == MB_TAG_ANY ) 00416 continue; 00417 else if( vit == dU.tagMap.end() ) 00418 MB_SET_ERR( MB_FAILURE, "Failed to find tag" ); 00419 00420 Tag tagh = ( *vit ).mTagh; 00421 assert( tagh ); 00422 void* tag_data; 00423 int ecount = these_ents.size(); 00424 rval = mbImpl->tag_iterate( tagh, these_ents.begin(), these_ents.end(), ecount, tag_data );MB_CHK_SET_ERR( rval, "Problem getting tag iterator" ); 00425 assert( ecount == (int)these_ents.size() ); 00426 damsel_err_t err = DMSLmodel_map_tag( tag_data, app_cont, (damsel_handle_ptr)&tagh ); 00427 CHK_DMSL_ERR( err, "Problem calling DMSLmodel_map_tag" ); 00428 } 00429 00430 return rval; 00431 } 00432 00433 ErrorCode ReadDamsel::get_contents( damsel_model m, damsel_container c, Range& ents ) 00434 { 00435 EntityHandle eh; 00436 if( DMSLcontainer_get_type( c ) == DAMSEL_HANDLE_CONTAINER_TYPE_SEQUENCE ) 00437 { 00438 damsel_handle start; 00439 size_t count, stride; 00440 damsel_err_t err = DMSLcontainer_sequence_get_contents( m, c, &start, &count, &stride ); 00441 CHK_DMSL_ERR( err, "DMSLcontainer_sequence_get_contents" ); 00442 if( stride == 1 ) 00443 { 00444 while( count ) 00445 { 00446 // Get start in rangemap 00447 RangeMap< damsel_handle, EntityHandle, 0 >::iterator beg = dmHandleRMap.lower_bound( start ); 00448 if( beg == dmHandleRMap.end() ) return MB_SUCCESS; 00449 unsigned long diff = std::max( ( *beg ).begin - start, (damsel_handle)0 ); 00450 unsigned long num = std::min( count - diff, (size_t)( *beg ).count ); 00451 ents.insert( ( *beg ).begin + diff, ( *beg ).begin + diff + num - 1 ); 00452 count -= ( diff + num ); 00453 ++beg; 00454 } 00455 } 00456 else 00457 { 00458 for( int i = count - 1; i >= 0; i-- ) 00459 { 00460 if( dmHandleRMap.find( start + i, eh ) ) ents.insert( eh ); 00461 } 00462 } 00463 } 00464 else if( DMSLcontainer_get_type( c ) == DAMSEL_HANDLE_CONTAINER_TYPE_VECTOR ) 00465 { 00466 damsel_handle* handle_ptr; 00467 size_t count; 00468 damsel_err_t err = DMSLcontainer_vector_get_contents( m, c, &handle_ptr, &count ); 00469 CHK_DMSL_ERR( err, "Trouble getting vector contents" ); 00470 for( int i = count - 1; i >= 0; i-- ) 00471 { 00472 if( dmHandleRMap.find( handle_ptr[i], eh ) ) ents.insert( eh ); 00473 } 00474 } 00475 else if( DMSLcontainer_get_type( c ) == DAMSEL_HANDLE_CONTAINER_TYPE_TREE ) 00476 { 00477 damsel_handle_ptr node_ptr = NULL; 00478 damsel_container cont = NULL; 00479 while( DMSLcontainer_tree_get_contents( m, c, &node_ptr, &cont ) == DMSL_OK && cont ) 00480 { 00481 ErrorCode rval = get_contents( m, c, ents ); 00482 if( MB_SUCCESS != rval ) return rval; 00483 } 00484 } 00485 00486 return MB_SUCCESS; 00487 } 00488 00489 ErrorCode ReadDamsel::get_contents( damsel_model m, damsel_container c, EntityHandle* ents ) 00490 { 00491 EntityHandle eh; 00492 int ind = 0; 00493 00494 if( DMSLcontainer_get_type( c ) == DAMSEL_HANDLE_CONTAINER_TYPE_SEQUENCE ) 00495 { 00496 damsel_handle start; 00497 size_t count, stride; 00498 damsel_err_t err = DMSLcontainer_sequence_get_contents( m, c, &start, &count, &stride ); 00499 CHK_DMSL_ERR( err, "Problem calling DMSLcontainer_sequence_get_contents" ); 00500 if( stride == 1 ) 00501 { 00502 while( count ) 00503 { 00504 // Get start in rangemap 00505 RangeMap< damsel_handle, EntityHandle, 0 >::iterator beg = dmHandleRMap.lower_bound( start ); 00506 if( beg == dmHandleRMap.end() ) return MB_SUCCESS; 00507 unsigned int diff = std::max( ( *beg ).begin - start, (damsel_handle)0 ); 00508 unsigned int num = std::min( count - diff, (size_t)( *beg ).count ); 00509 for( EntityHandle hdl = ( *beg ).begin + diff; hdl <= (int)( *beg ).begin + diff + num - 1; hdl++ ) 00510 ents[ind++] = hdl; 00511 count -= ( diff + num ); 00512 ++beg; 00513 } 00514 } 00515 else 00516 { 00517 for( int i = count - 1; i >= 0; i-- ) 00518 { 00519 if( dmHandleRMap.find( start + i, eh ) ) ents[i] = eh; 00520 } 00521 } 00522 } 00523 else if( DMSLcontainer_get_type( c ) == DAMSEL_HANDLE_CONTAINER_TYPE_VECTOR ) 00524 { 00525 damsel_handle_ptr handle_ptr; 00526 size_t count; 00527 damsel_err_t err = DMSLcontainer_vector_get_contents( m, c, &handle_ptr, &count ); 00528 CHK_DMSL_ERR( err, "Failed to get vector contents" ); 00529 for( int i = count - 1; i >= 0; i-- ) 00530 { 00531 if( dmHandleRMap.find( handle_ptr[i], eh ) ) ents[i] = eh; 00532 } 00533 } 00534 else if( DMSLcontainer_get_type( c ) == DAMSEL_HANDLE_CONTAINER_TYPE_TREE ) 00535 { 00536 damsel_handle_ptr node_ptr = NULL; 00537 damsel_container cont = NULL; 00538 while( DMSLcontainer_tree_get_contents( m, c, &node_ptr, &cont ) == DMSL_OK && cont ) 00539 { 00540 ErrorCode rval = get_contents( m, cont, ents ); 00541 if( MB_SUCCESS != rval ) return rval; 00542 unsigned int num = DMSLcontainer_count( cont ); 00543 ents += num; 00544 } 00545 } 00546 00547 return MB_SUCCESS; 00548 } 00549 00550 /* 00551 ErrorCode ReadDamsel::process_coll_infos(std::vector<damsel_collection_buf_type> &coll_infos) 00552 { 00553 ErrorCode rval = MB_SUCCESS, tmp_rval; 00554 EntityHandle seth; 00555 std::vector<subrange> handle_subranges; 00556 for (std::vector<damsel_collection_buf_type>::iterator cit = coll_infos.begin(); cit != 00557 coll_infos.end(); ++cit) { 00558 // Make the set 00559 tmp_rval = mbImpl->create_meshset(((*cit).type == DAMSEL_HANDLE_COLLECTION_TYPE_SET ? 00560 MESHSET_SET : MESHSET_ORDERED), seth); if (MB_SUCCESS != tmp_rval) rval = tmp_rval; 00561 // Make datastructures to pass things to process_entity_tags 00562 Range tmp_range(seth, seth); 00563 damsel_container ch = DMSLcontainer_create_sequence(dU.dmslModel, seth, 1, 1); 00564 00565 // Get the tags on this set 00566 tmp_rval = process_entity_tags((*cit).tag_count, (*cit).tag_handle_container, ch, tmp_range); 00567 if (MB_SUCCESS != tmp_rval) 00568 rval = tmp_rval; 00569 00570 // Process the set contents 00571 if ((*cit).type == DAMSEL_HANDLE_COLLECTION_TYPE_SET) { 00572 Range ents; 00573 tmp_rval = get_contents(dU.dmslModel, (*cit).contents, ents); 00574 if (MB_SUCCESS != tmp_rval) 00575 rval = tmp_rval; 00576 else if (!ents.empty()) { 00577 tmp_rval = mbImpl->add_entities(seth, ents); 00578 if (MB_SUCCESS != tmp_rval) 00579 rval = tmp_rval; 00580 } 00581 } 00582 else { 00583 std::vector<EntityHandle> ents(DMSLcontainer_count((*cit).contents)); 00584 tmp_rval = get_contents(dU.dmslModel, (*cit).contents, &ents[0]); 00585 if (MB_SUCCESS != tmp_rval) 00586 rval = tmp_rval; 00587 else if (!ents.empty()) { 00588 tmp_rval = mbImpl->add_entities(seth, &ents[0], ents.size()); 00589 if (MB_SUCCESS != tmp_rval) 00590 rval = tmp_rval; 00591 } 00592 } 00593 00594 // Get the file handle for this collection, and map it to moab's set handle 00595 damsel_handle collh = (damsel_handle)(*((*cit).collection_handle)); 00596 if (handle_subranges.empty() || seth != (*handle_subranges.rbegin()).seth + 1 || 00597 collh != (*handle_subranges.rbegin()).collh + 1) { 00598 handle_subranges.push_back(subrange(collh, seth, 1)); 00599 } 00600 else (*handle_subranges.rbegin()).count++; 00601 } 00602 00603 for (std::vector<subrange>::iterator vit = handle_subranges.begin(); vit != 00604 handle_subranges.end(); ++vit) dmHandleRMap.insert((*vit).collh, (*vit).seth, (*vit).count); 00605 00606 return rval; 00607 } 00608 */ 00609 00610 } // namespace moab