main.cpp

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/* *****************************************************************
    MESQUITE -- The Mesh Quality Improvement Toolkit

    Copyright 2004 Sandia Corporation and Argonne National
    Laboratory.  Under the terms of Contract DE-AC04-94AL85000
    with Sandia Corporation, the U.S. Government retains certain
    rights in this software.

    This library is free software; you can redistribute it and/or
    modify it under the terms of the GNU Lesser General Public
    License as published by the Free Software Foundation; either
    version 2.1 of the License, or (at your option) any later version.

    This library is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
    Lesser General Public License for more details.

    You should have received a copy of the GNU Lesser General Public License
    (lgpl.txt) along with this library; if not, write to the Free Software
    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

    diachin2@llnl.gov, djmelan@sandia.gov, mbrewer@sandia.gov,
    pknupp@sandia.gov, tleurent@mcs.anl.gov, tmunson@mcs.anl.gov

  ***************************************************************** */
// -*- Mode : c++; tab-width: 3; c-tab-always-indent: t; indent-tabs-mode: nil; c-basic-offset: 3
// -*-
//
//   SUMMARY:
//     USAGE:
//
// ORIG-DATE: 19-Feb-02 at 10:57:52
//  LAST-MOD: 23-Jul-03 at 18:09:51 by Thomas Leurent
//
//
// DESCRIPTION:
// ============
/*! \file main.cpp

describe main.cpp here

 */
// DESCRIP-END.
//

#include <iostream>
using std::cout;
using std::endl;
#include <cstdlib>

#include "TestUtil.hpp"
#include "Mesquite.hpp"
#include "MeshImpl.hpp"
#include "MsqError.hpp"
#include "Vector3D.hpp"
#include "InstructionQueue.hpp"
#include "PatchData.hpp"
#include "TerminationCriterion.hpp"
#include "QualityAssessor.hpp"
//#include "QuadLagrangeShape.hpp"

// algorithms
#include "IdealShapeTarget.hpp"
#include "TQualityMetric.hpp"
#include "TInverseMeanRatio.hpp"
#include "ConditionNumberQualityMetric.hpp"
#include "LPtoPTemplate.hpp"
#include "LInfTemplate.hpp"
#include "SteepestDescent.hpp"
#include "ConjugateGradient.hpp"

#include "PlanarDomain.hpp"
using namespace MBMesquite;

/* This is the input mesh topology
     (0)------(16)-----(1)------(17)-----(2)------(18)-----(3)
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
     (19)      0       (20)      1       (21)      2       (22)
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
     (4)------(23)-----(5)------(24)-----(6)------(25)-----(7)
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
     (26)      3       (27)      4       (28)      5       (29)
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
     (8)------(30)-----(9)------(31)-----(10)-----(32)-----(11)
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
     (33)      6       (34)      7       (35)      8       (36)
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
      |                 |                 |                 |
     (12)-----(37)-----(13)-----(38)-----(14)-----(39)-----(15)
*/

std::string LINEAR_INPUT_FILE_NAME       = std::string( STRINGIFY( SRCDIR ) ) + "/linear_input.vtk";
std::string QUADRATIC_INPUT_FILE_NAME    = std::string( STRINGIFY( SRCDIR ) ) + "/quadratic_input.vtk";
std::string EXPECTED_LINAR_FILE_NAME     = std::string( STRINGIFY( SRCDIR ) ) + "/expected_linear_output.vtk";
std::string EXPECTED_QUADRATIC_FILE_NAME = std::string( STRINGIFY( SRCDIR ) ) + "/expected_quadratic_output.vtk";
std::string HOUR_INPUT_FILE_NAME         = std::string( STRINGIFY( SRCDIR ) ) + "/hour-quad8.vtk";
std::string OUTPUT_FILE_NAME             = "smoothed_qudratic_mesh.vtk";
const unsigned NUM_CORNER_VERTICES       = 16;
const unsigned NUM_MID_NODES             = 24;
const double SPATIAL_COMPARE_TOLERANCE   = 4e-6;

void compare_nodes( size_t start_index, size_t end_index, Mesh* mesh1, Mesh* mesh2, MsqError& err )
{
    size_t i, num_verts = end_index - start_index;
    std::vector< MsqVertex > verts1( num_verts ), verts2( num_verts );
    std::vector< Mesh::VertexHandle > handles1( num_verts ), handles2( num_verts );

    /* VertexIterator skips higher-order nodes.
       For now, just assume index == handle

      std::vector<Mesh::VertexHandle>::iterator handle_iter1, handle_iter2;

        // Skip start_index vertices
      VertexIterator* iter1 = mesh1->vertex_iterator( err ); MSQ_ERRRTN(err);
      VertexIterator* iter2 = mesh2->vertex_iterator( err ); MSQ_ERRRTN(err);
      for (i = 0; i < start_index; ++i)
      {
        if (iter1->is_at_end())
        {
          MSQ_SETERR(err)("start index out of range for first mesh set", MsqError::INVALID_ARG);
          return;
        }
        if (iter2->is_at_end())
        {
          MSQ_SETERR(err)("start index out of range for second mesh set", MsqError::INVALID_ARG);
          return;
        }
        iter1->operator++();
        iter2->operator++();
      }

        // Get handles for vertices
      handle_iter1 = handles1.begin();
      handle_iter2 = handles2.begin();
      for (i = start_index; i < end_index; ++i)
      {
        if (iter1->is_at_end())
        {
          MSQ_SETERR(err)("end index out of range for first mesh set", MsqError::INVALID_ARG);
          return;
        }
        *handle_iter1 = iter1->operator*();
        iter1->operator++();
        ++handle_iter1;

        if (iter2->is_at_end())
        {
          MSQ_SETERR(err)("end index out of range for second mesh set", MsqError::INVALID_ARG);
          return;
        }
        *handle_iter2 = iter2->operator*();
        iter2->operator++();
        ++handle_iter2;
      }
    */
    for( i = start_index; i < end_index; ++i )
        handles1[i - start_index] = handles2[i - start_index] = (void*)i;

    // Get coordinates from handles
    mesh1->vertices_get_coordinates( arrptr( handles1 ), arrptr( verts1 ), num_verts, err );MSQ_ERRRTN( err );
    mesh2->vertices_get_coordinates( arrptr( handles2 ), arrptr( verts2 ), num_verts, err );MSQ_ERRRTN( err );

    // Compare coordinates
    for( i = 0; i < num_verts; ++i )
    {
        const double diff = ( verts1[i] - verts2[i] ).length();
        if( diff > SPATIAL_COMPARE_TOLERANCE )
        {
            MSQ_SETERR( err )
            ( MsqError::INTERNAL_ERROR, "%u%s vertices differ. (%f,%f,%f) vs (%f,%f,%f)", (unsigned)( 1 + i ),
              i % 10 == 0   ? "st"
              : i % 10 == 1 ? "nd"
              : i % 10 == 2 ? "rd"
                            : "th",
              verts1[i][0], verts1[i][1], verts1[i][2], verts2[i][0], verts2[i][1], verts2[i][2] );
            return;
        }
    }
}

// code copied from testSuite/algorithm_test/main.cpp
InstructionQueue* create_instruction_queue( MsqError& err )
{
    // creates an intruction queue
    InstructionQueue* queue1 = new InstructionQueue;

    // creates a mean ratio quality metric ...
    // IdealWeightInverseMeanRatio* mean = new IdealWeightInverseMeanRatio(err); MSQ_ERRZERO(err);
    TargetCalculator* tc = new IdealShapeTarget;
    TQualityMetric* mean = new TQualityMetric( tc, 0, new TInverseMeanRatio );

    LPtoPTemplate* obj_func = new LPtoPTemplate( mean, 1, err );
    MSQ_ERRZERO( err );

    // creates the optimization procedures
    //   ConjugateGradient* pass1 = new ConjugateGradient( obj_func, err );
    SteepestDescent* pass1 = new SteepestDescent( obj_func );

    // perform optimization globally
    pass1->use_global_patch();

    // QualityAssessor* mean_qa = new QualityAssessor(mean);

    //**************Set termination criterion****************

    // perform 1 pass of the outer loop (this line isn't essential as it is
    // the default behavior).
    TerminationCriterion* tc_outer = new TerminationCriterion;
    tc_outer->add_iteration_limit( 1 );
    pass1->set_outer_termination_criterion( tc_outer );

    // perform the inner loop until a certain objective function value is
    // reached.  The exact value needs to be determined (about 18095).
    // As a safety, also stop if the time exceeds 10 minutes (600 seconds).
    TerminationCriterion* tc_inner = new TerminationCriterion;
    tc_inner->add_absolute_vertex_movement( 1e-6 );
    pass1->set_inner_termination_criterion( tc_inner );

    // adds 1 pass of pass1 to mesh_set1
    // queue1->add_quality_assessor(mean_qa,err); MSQ_ERRZERO(err);
    queue1->set_master_quality_improver( pass1, err );
    MSQ_ERRZERO( err );
    // queue1->add_quality_assessor(mean_qa,err); MSQ_ERRZERO(err);

    return queue1;
}

int do_test( bool slave )
{
    MsqPrintError err( cout );
    //  QuadLagrangeShape quad9;

    // Create geometry
    Vector3D z( 0, 0, 1 ), o( 0, 0, 0 );
    PlanarDomain geom( z, o );

    // Read in linear input mesh
    cout << "Reading " << LINEAR_INPUT_FILE_NAME << endl;
    MeshImpl* linear_in = new MeshImpl;
    linear_in->read_vtk( LINEAR_INPUT_FILE_NAME.c_str(), err );
    if( MSQ_CHKERR( err ) ) return 1;

    // Read in expected linear results
    cout << "Reading " << EXPECTED_LINAR_FILE_NAME << endl;
    MeshImpl* linear_ex = new MeshImpl;
    linear_ex->read_vtk( EXPECTED_LINAR_FILE_NAME.c_str(), err );
    if( MSQ_CHKERR( err ) ) return 1;

    // Read in second copy of quadratic input mesh
    cout << "Reading " << QUADRATIC_INPUT_FILE_NAME << " again" << endl;
    MeshImpl* quadratic_in_2 = new MeshImpl;
    quadratic_in_2->read_vtk( QUADRATIC_INPUT_FILE_NAME.c_str(), err );
    if( MSQ_CHKERR( err ) ) return 1;

    // Read in expected quadratic results
    cout << "Reading " << EXPECTED_QUADRATIC_FILE_NAME << endl;
    MeshImpl* quadratic_ex = new MeshImpl;
    quadratic_ex->read_vtk( EXPECTED_QUADRATIC_FILE_NAME.c_str(), err );
    if( MSQ_CHKERR( err ) ) return 1;

    // Smooth linear mesh and check results
    cout << "Smoothing linear elements" << endl;
    InstructionQueue* q1 = create_instruction_queue( err );
    if( MSQ_CHKERR( err ) ) return 1;
    MeshDomainAssoc* mesh_and_domain = new MeshDomainAssoc( linear_in, &geom );
    q1->run_instructions( mesh_and_domain, err );
    if( MSQ_CHKERR( err ) ) return 1;
    delete mesh_and_domain;
    cout << "Checking results" << endl;
    compare_nodes( 0, NUM_CORNER_VERTICES, linear_in, linear_ex, err );
    if( MSQ_CHKERR( err ) )
    {
        MsqError tmperr;
        linear_in->write_vtk( "bad_mesh.vtk", tmperr );
        return 1;
    }
    delete q1;
    delete linear_in;

    // Smooth corner vertices and adjust mid-side nodes
    cout << "Smoothing quadratic elements" << endl;
    InstructionQueue* q3 = create_instruction_queue( err );
    if( MSQ_CHKERR( err ) ) return 1;
    if( !slave ) q3->set_slaved_ho_node_mode( Settings::SLAVE_NONE );
    //  q3->set_mapping_function( &quad9 );
    MeshDomainAssoc* mesh_and_domain2 = new MeshDomainAssoc( quadratic_in_2, &geom );
    q3->run_instructions( mesh_and_domain2, err );
    if( MSQ_CHKERR( err ) ) return 1;
    delete mesh_and_domain2;
    // Make sure corner vertices are the same as in the linear case
    cout << "Checking results" << endl;
    compare_nodes( 0, NUM_CORNER_VERTICES, quadratic_in_2, linear_ex, err );
    if( MSQ_CHKERR( err ) ) return 1;
    delete linear_ex;

    // Make sure mid-side vertices are updated correctly
    compare_nodes( NUM_CORNER_VERTICES, NUM_CORNER_VERTICES + NUM_MID_NODES, quadratic_in_2, quadratic_ex, err );
    if( MSQ_CHKERR( err ) )
    {
        MsqError tmperr;
        quadratic_in_2->write_vtk( "bad_mesh.vtk", tmperr );
        return 1;
    }
    delete q3;
    delete quadratic_in_2;
    delete quadratic_ex;

    if( MSQ_CHKERR( err ) ) return 1;
    return 0;
}

int do_smooth_ho()
{
    MsqPrintError err( cout );
    //  QuadLagrangeShape quad9;

    // Create geometry
    PlanarDomain geom( PlanarDomain::XY );

    // Read in one copy of quadratic input mesh
    cout << "Reading " << HOUR_INPUT_FILE_NAME << endl;
    MeshImpl* quadratic_in = new MeshImpl;
    quadratic_in->read_vtk( HOUR_INPUT_FILE_NAME.c_str(), err );
    if( MSQ_CHKERR( err ) ) return 1;

    // Read in expected results
    // cout << "Reading " << HOUR_EXPECTED_FILE_NAME << endl;
    // MeshImpl* quadratic_ex = new MeshImpl;
    // quadratic_ex->read_vtk( results, err );
    // if (MSQ_CHKERR(err)) return 1;

    // Smooth linear mesh and check results
    cout << "Smoothing higher-order nodes" << endl;
    InstructionQueue* q1 = create_instruction_queue( err );
    if( MSQ_CHKERR( err ) ) return 1;
    q1->set_slaved_ho_node_mode( Settings::SLAVE_NONE );
    //  q1->set_mapping_function( &quad9 );
    MeshDomainAssoc mesh_and_domain = MeshDomainAssoc( quadratic_in, &geom );
    q1->run_instructions( &mesh_and_domain, err );
    if( MSQ_CHKERR( err ) ) return 1;
    cout << "Checking results" << endl;
    // compare_nodes( 0, NUM_CORNER_VERTICES + NUM_MID_NODES,
    //               quadratic_in, quadratic_ex, err );
    if( MSQ_CHKERR( err ) )
    {
        MsqError tmperr;
        quadratic_in->write_vtk( "bad_mesh.vtk", tmperr );
        return 1;
    }
    delete q1;
    quadratic_in->write_vtk( "smooth_ho.vtk", err );
    delete quadratic_in;

    if( MSQ_CHKERR( err ) ) return 1;
    return 0;
}

int main()
{
    cout << "Running test with all higher-order nodes slaved." << endl;
    int result1 = do_test( true );
    cout << "Running test with no higher-order nodes slaved." << endl;
    int result2 = do_test( false );
    cout << "Running test with only ho-nodes free." << endl;
    int result3 = do_smooth_ho();
    return result1 + result2 + result3;
}