MOAB: Mesh Oriented datABase  (version 5.3.0)
size.cpp File Reference
#include <iostream>
#include <cstdlib>
#include <vector>
#include <set>
#include <string>
#include <cstdio>
#include <iomanip>
#include "moab/MOABConfig.h"
#include <sys/times.h>
#include <climits>
#include <unistd.h>
#include <ctime>
#include <termios.h>
#include <sys/ioctl.h>
#include <cmath>
#include <cassert>
#include <cfloat>
#include "moab/Core.hpp"
#include "moab/Range.hpp"
#include "MBTagConventions.hpp"
#include "moab/Interface.hpp"
#include "moab/ReaderWriterSet.hpp"
#include "measure.hpp"
+ Include dependency graph for size.cpp:

Go to the source code of this file.

Classes

struct  stat_set
struct  set_stats
struct  TagCounts

Defines

#define USAGE_ERROR   1
#define READ_ERROR   2
#define WRITE_ERROR   3
#define OTHER_ERROR   4
#define ENT_NOT_FOUND   5

Functions

static void print_usage (const char *name, std::ostream &stream)
static ErrorCode gather_set_stats (EntityHandle set, set_stats &stats)
static ErrorCode gather_tag_counts (EntityHandle set, std::vector< TagCounts > &counts)
void add_tag_counts (std::vector< TagCounts > &counts, const std::vector< TagCounts > &add)
static const char * dashes (unsigned count)
static void print_tag_counts (const std::vector< TagCounts > &counts)
static void print_stats (set_stats &stats)
bool parse_id_list (const char *string, std::set< int > &results)
bool make_opts_string (std::vector< std::string > options, std::string &opts)
void list_formats (Interface *gMB)
static void usage_error (const char *name)
static void print_time (int clk_per_sec, const char *prefix, clock_t ticks, std::ostream &stream)
void reset_times ()
void write_times (std::ostream &stream)
int main (int argc, char *argv[])

Variables

Core mb
clock_t usr_time
clock_t sys_time
clock_t abs_time
const char * geom_type_names [] = { "Vertex", "Curve", "Surface", "Volume" }
const char * mesh_type_names [] = { "Dirichlet Set", "Neumann Set", "Material Set" }
const char * mesh_type_tags [] = { DIRICHLET_SET_TAG_NAME, NEUMANN_SET_TAG_NAME, MATERIAL_SET_TAG_NAME }

Define Documentation

#define ENT_NOT_FOUND   5

Definition at line 37 of file size.cpp.

#define OTHER_ERROR   4

Definition at line 36 of file size.cpp.

Referenced by list_formats().

#define READ_ERROR   2

Definition at line 34 of file size.cpp.

#define USAGE_ERROR   1

Definition at line 33 of file size.cpp.

#define WRITE_ERROR   3

Definition at line 35 of file size.cpp.


Function Documentation

void add_tag_counts ( std::vector< TagCounts > &  counts,
const std::vector< TagCounts > &  add 
)

Definition at line 206 of file size.cpp.

References MBMAXTYPE, MBVERTEX, and t.

Referenced by main().

{
    for( size_t i = 0; i < add.size(); ++i )
    {
        size_t j;
        for( j = 0; j < counts.size(); ++j )
            if( add[i].name == counts[j].name ) break;
        if( j == counts.size() )
        {
            counts.push_back( add[i] );
            continue;
        }
        for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
            counts[j].counts[t] += add[i].counts[t];
    }
}
static const char* dashes ( unsigned  count) [static]

Definition at line 223 of file size.cpp.

Referenced by MBMesquite::print(), moab::Core::print_database(), print_stats(), and print_tag_counts().

{
    static std::vector< char > dashes;
    dashes.clear();
    dashes.resize( count + 1, '-' );
    dashes[count] = '\0';
    return &dashes[0];
}
static ErrorCode gather_set_stats ( EntityHandle  set,
set_stats stats 
) [static]

Definition at line 124 of file size.cpp.

References stat_set::add(), moab::Range::begin(), conn, edge_length(), set_stats::edge_uses, moab::Range::end(), ErrorCode, moab::Core::get_adjacencies(), moab::Core::get_connectivity(), moab::Core::get_coords(), moab::Core::get_entities_by_type(), moab::Core::get_number_entities_by_type(), mb, MB_SUCCESS, MBEDGE, MBENTITYSET, MBPOLYGON, MBPOLYHEDRON, MBVERTEX, moab::measure(), set_stats::nodes, moab::CN::NumSubEntities(), set_stats::stats, moab::CN::SubEntityVertexIndices(), and moab::Interface::UNION.

Referenced by main().

{
    int count;
    ErrorCode rval = mb.get_number_entities_by_type( set, MBVERTEX, count );
    if( MB_SUCCESS != rval ) return rval;
    stats.nodes = count;

    int edge_vtx_idx[2];
    std::vector< EntityHandle > conn;
    std::vector< double > coords;
    for( EntityType type = MBEDGE; type < MBENTITYSET; ++type )
    {
        int num_edges = CN::NumSubEntities( type, 1 );

        Range range;
        rval = mb.get_entities_by_type( set, type, range, true );
        if( MB_SUCCESS != rval ) return rval;
        for( Range::iterator i = range.begin(); i != range.end(); ++i )
        {
            rval = mb.get_connectivity( &*i, 1, conn, true );
            if( MB_SUCCESS != rval ) return rval;
            if( type == MBPOLYHEDRON )
            {
                std::vector< EntityHandle > dum_conn( conn );
                conn.clear();
                rval = mb.get_adjacencies( &dum_conn[0], dum_conn.size(), 0, false, conn, Interface::UNION );
                if( MB_SUCCESS != rval ) return rval;
            }
            coords.resize( 3 * conn.size() );
            rval = mb.get_coords( &conn[0], conn.size(), &coords[0] );
            if( MB_SUCCESS != rval ) return rval;
            stats.stats[type].add( measure( type, conn.size(), &coords[0] ) );

            if( type != MBEDGE )
            {
                if( type == MBPOLYGON ) num_edges = conn.size();

                for( int e = 0; e < num_edges; ++e )
                {
                    if( type == MBPOLYGON )
                    {
                        edge_vtx_idx[0] = e;
                        edge_vtx_idx[1] = ( e + 1 ) % num_edges;
                    }
                    else
                        CN::SubEntityVertexIndices( type, 1, e, edge_vtx_idx );
                    stats.edge_uses.add( edge_length( &coords[3 * edge_vtx_idx[0]], &coords[3 * edge_vtx_idx[1]] ) );
                }
            }
        }
    }
    return MB_SUCCESS;
}
static ErrorCode gather_tag_counts ( EntityHandle  set,
std::vector< TagCounts > &  counts 
) [static]

Definition at line 188 of file size.cpp.

References ErrorCode, moab::Core::get_number_entities_by_type_and_tag(), mb, MB_SUCCESS, MBMAXTYPE, MBVERTEX, t, moab::Core::tag_get_name(), and moab::Core::tag_get_tags().

Referenced by main().

{
    std::vector< Tag > tags;
    mb.tag_get_tags( tags );
    for( size_t i = 0; i < tags.size(); ++i )
    {
        std::string name;
        ErrorCode rval = mb.tag_get_name( tags[i], name );
        if( MB_SUCCESS != rval || name.empty() ) continue;

        counts.push_back( name );
        for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
            mb.get_number_entities_by_type_and_tag( set, t, &tags[i], 0, 1, counts.back().counts[t] );
    }

    return MB_SUCCESS;
}
void list_formats ( Interface gMB)

Definition at line 486 of file size.cpp.

References ErrorCode, MB_SUCCESS, OTHER_ERROR, moab::Interface::query_interface(), and moab::Interface::release_interface().

Referenced by main().

{
    const char iface_name[] = "ReaderWriterSet";
    ErrorCode err;
    ReaderWriterSet* set = 0;
    ReaderWriterSet::iterator i;
    std::ostream& str = std::cout;

    // get ReaderWriterSet
    err = gMB->query_interface( set );
    if( err != MB_SUCCESS || !set )
    {
        std::cerr << "Internal error:  Interface \"" << iface_name << "\" not available.\n";
        exit( OTHER_ERROR );
    }

    // get field width for format description
    size_t w = 0;
    for( i = set->begin(); i != set->end(); ++i )
        if( i->description().length() > w ) w = i->description().length();

    // write table header
    str << "Format  " << std::setw( w ) << std::left << "Description"
        << "  Read  Write  File Name Suffixes\n"
        << "------  " << std::setw( w ) << std::setfill( '-' ) << "" << std::setfill( ' ' )
        << "  ----  -----  ------------------\n";

    // write table data
    for( i = set->begin(); i != set->end(); ++i )
    {
        std::vector< std::string > ext;
        i->get_extensions( ext );
        str << std::setw( 6 ) << i->name() << "  " << std::setw( w ) << std::left << i->description() << "  "
            << ( i->have_reader() ? " yes" : "  no" ) << "  " << ( i->have_writer() ? "  yes" : "   no" ) << " ";
        for( std::vector< std::string >::iterator j = ext.begin(); j != ext.end(); ++j )
            str << " " << *j;
        str << std::endl;
    }
    str << std::endl;

    gMB->release_interface( set );
    exit( 0 );
}
int main ( int  argc,
char *  argv[] 
)

Definition at line 605 of file size.cpp.

References set_stats::add(), add_tag_counts(), moab::Range::begin(), set_stats::clear(), moab::Core::delete_mesh(), dim, dim_tag, moab::Range::empty(), moab::Range::end(), entities, ErrorCode, gather_set_stats(), gather_tag_counts(), GEOM_DIMENSION_TAG_NAME, geom_type_names, moab::Core::get_entities_by_type_and_tag(), moab::Core::globalId_tag(), id_tag, moab::Core::list_entities(), list_formats(), moab::Core::load_file(), make_opts_string(), mb, MB_SUCCESS, MB_TAG_NOT_FOUND, MB_TYPE_INTEGER, MBENTITYSET, mesh_type_names, mesh_type_tags, MPI_COMM_WORLD, print_stats(), print_tag_counts(), print_usage(), read_options, reset_times(), t, moab::Core::tag_get_data(), moab::Core::tag_get_handle(), USAGE_ERROR, usage_error(), and write_times().

{
    bool geom_owners     = false;
    bool mesh_owners     = false;
    bool just_list       = false;
    bool just_list_basic = false;
    bool tag_count       = false;
    std::vector< std::string > file_list;
    set_stats total_stats, file_stats;
    std::vector< TagCounts > total_counts, file_counts;
    ErrorCode rval;

    Range range;

    int i;
    std::vector< std::string > read_opts;

    int proc_id = 0;
#ifdef MOAB_HAVE_MPI
    MPI_Init( &argc, &argv );
    MPI_Comm_rank( MPI_COMM_WORLD, &proc_id );
#endif

    // scan arguments
    bool do_flag     = true;
    bool print_times = false;
    bool parallel = false, resolve_shared = false, exchange_ghosts = false;
    bool printed_usage = false;
    for( i = 1; i < argc; i++ )
    {
        if( !argv[i][0] ) usage_error( argv[0] );

        if( do_flag && argv[i][0] == '-' )
        {
            switch( argv[i][1] )
            {
                    // do flag arguments:
                case '-':
                    do_flag = false;
                    break;
                case 'T':
                    print_times = true;
                    break;
                case 'h':
                case 'H':
                    print_usage( argv[0], std::cerr );
                    printed_usage = true;
                    break;
                case 'f':
                    list_formats( &mb );
                    break;
                case 'l':
                    if( strlen( argv[i] ) == 2 )
                        just_list_basic = true;
                    else if( strlen( argv[i] ) == 3 && argv[i][2] == 'l' )
                        just_list = true;
                    break;
#ifdef MOAB_HAVE_MPI
                case 'p':
                    parallel = true;
                    if( argv[i][2] == '1' || argv[i][2] == '2' ) resolve_shared = true;
                    if( argv[i][2] == '2' ) exchange_ghosts = true;
                    break;
#endif
                case 'g':
                    geom_owners = true;
                    break;
                case 'm':
                    mesh_owners = true;
                    break;
                case 't':
                    tag_count = true;
                    break;
                default:
                    ++i;
                    switch( argv[i - 1][1] )
                    {
                        case 'O':
                            read_opts.push_back( argv[i] );
                            break;
                        default:
                            std::cerr << "Invalid option: " << argv[i] << std::endl;
                    }
            }
        }
        // do file names
        else
        {
            file_list.push_back( argv[i] );
        }
    }

    // construct options string from individual options
    std::string read_options;
    if( parallel )
    {
        read_opts.push_back( "PARALLEL=READ_PART" );
        read_opts.push_back( "PARTITION=PARALLEL_PARTITION" );
    }
    if( resolve_shared ) read_opts.push_back( "PARALLEL_RESOLVE_SHARED_ENTS" );
    if( exchange_ghosts ) read_opts.push_back( "PARALLEL_GHOSTS=3.0.1" );

    if( !make_opts_string( read_opts, read_options ) )
    {
#ifdef MOAB_HAVE_MPI
        MPI_Finalize();
#endif
        return USAGE_ERROR;
    }

    if( file_list.empty() && !printed_usage ) print_usage( argv[0], std::cerr );

    for( std::vector< std::string >::iterator f = file_list.begin(); f != file_list.end(); ++f )
    {
        reset_times();
        printf( "File %s:\n", f->c_str() );
        if( MB_SUCCESS != mb.load_file( f->c_str(), NULL, read_options.c_str() ) )
        {
            fprintf( stderr, "Error reading file: %s\n", f->c_str() );
            return 1;
        }

        if( tag_count )
            rval = gather_tag_counts( 0, file_counts );
        else if( !just_list )
            rval = gather_set_stats( 0, file_stats );
        else
            rval = MB_SUCCESS;

        if( MB_SUCCESS != rval )
        {
            fprintf( stderr, "Error processing mesh from file: %s\n", f->c_str() );
            return 1;
        }

        if( tag_count )
        {
            add_tag_counts( total_counts, file_counts );
            print_tag_counts( file_counts );
            file_counts.clear();
        }
        else if( just_list )
        {
            mb.list_entities( 0, -1 );
        }
        else
        {
            total_stats.add( file_stats );
            print_stats( file_stats );
            file_stats.clear();
        }

        if( geom_owners )
        {
            Range entities;
            Tag dim_tag = 0, id_tag = 0;
            rval = mb.tag_get_handle( GEOM_DIMENSION_TAG_NAME, 1, MB_TYPE_INTEGER, dim_tag );
            if( MB_TAG_NOT_FOUND == rval ) { fprintf( stderr, "No geometry tag defined.\n" ); }
            else if( MB_SUCCESS != rval )
            {
                fprintf( stderr, "Error retreiving geometry tag.\n" );
                return 2;
            }

            id_tag = mb.globalId_tag();

            if( dim_tag && id_tag )
            {
                if( MB_SUCCESS != mb.get_entities_by_type_and_tag( 0, MBENTITYSET, &dim_tag, 0, 1, entities ) )
                {
                    fprintf( stderr, "Error retreiving geometry entitities.\n" );
                }
            }

            if( entities.empty() ) { fprintf( stderr, "No geometry entities defined in file.\n" ); }

            for( Range::iterator rit = entities.begin(); rit != entities.end(); ++rit )
            {
                int id = 0, dim = 0;
                if( MB_SUCCESS != mb.tag_get_data( dim_tag, &*rit, 1, &dim ) ||
                    MB_SUCCESS != mb.tag_get_data( id_tag, &*rit, 1, &id ) )
                {
                    fprintf( stderr, "Error retreiving tag data for geometry entity.\n" );
                    continue;
                }

                printf( "%s %d:\n", geom_type_names[dim], id );
                if( tag_count )
                    rval = gather_tag_counts( *rit, file_counts );
                else if( !just_list && !just_list_basic )
                    rval = gather_set_stats( *rit, file_stats );

                if( MB_SUCCESS != rval )
                    fprintf( stderr, "Error processing mesh from file: %s\n", f->c_str() );
                else if( tag_count )
                    print_tag_counts( file_counts );
                else if( just_list )
                    mb.list_entities( 0, 1 );
                else if( just_list_basic )
                    mb.list_entities( 0, 0 );
                else
                    print_stats( file_stats );

                file_stats.clear();
                file_counts.clear();
            }
        }

        if( mesh_owners )
        {
            for( int t = 0; t < 3; ++t )
            {
                Range entities;
                Tag tag = 0;
                rval    = mb.tag_get_handle( mesh_type_tags[t], 1, MB_TYPE_INTEGER, tag );
                if( MB_TAG_NOT_FOUND == rval ) { continue; }
                else if( MB_SUCCESS != rval )
                {
                    fprintf( stderr, "Error retreiving %s tag.\n", mesh_type_tags[t] );
                    return 2;
                }

                if( MB_SUCCESS != mb.get_entities_by_type_and_tag( 0, MBENTITYSET, &tag, 0, 1, entities ) )
                {
                    fprintf( stderr, "Error retreiving %s entitities.\n", mesh_type_names[t] );
                    continue;
                }

                for( Range::iterator rit = entities.begin(); rit != entities.end(); ++rit )
                {
                    int id = 0;
                    if( MB_SUCCESS != mb.tag_get_data( tag, &*rit, 1, &id ) )
                    {
                        fprintf( stderr, "Error retreiving tag data for %s entity.\n", mesh_type_names[t] );
                        continue;
                    }

                    printf( "%s %d:\n", mesh_type_names[t], id );
                    if( tag_count )
                    {
                        rval = gather_tag_counts( *rit, file_counts );
                        if( MB_SUCCESS != rval )
                            fprintf( stderr, "Error processing tags from file: %s\n", f->c_str() );
                        else
                            print_tag_counts( file_counts );
                    }
                    else if( just_list )
                        mb.list_entities( 0, 1 );
                    else if( just_list_basic )
                        mb.list_entities( 0, 0 );
                    else if( !just_list && !just_list_basic )
                    {
                        rval = gather_set_stats( *rit, file_stats );

                        if( rval != MB_SUCCESS )
                            fprintf( stderr, "Error processing mesh from file: %s\n", f->c_str() );
                        else
                            print_stats( file_stats );
                    }
                    file_stats.clear();
                    file_counts.clear();
                }
            }
        }

        if( print_times && !proc_id ) write_times( std::cout );
        mb.delete_mesh();
    }

    if( file_list.size() > 1 && !just_list && !just_list_basic )
    {
        printf( "Total for all files:\n" );
        if( tag_count )
            print_tag_counts( total_counts );
        else
            print_stats( total_stats );
    }
#ifdef MOAB_HAVE_MPI
    MPI_Finalize();
#endif
    return 0;
}
bool make_opts_string ( std::vector< std::string >  options,
std::string &  opts 
)

Definition at line 439 of file size.cpp.

{
    opts.clear();
    if( options.empty() ) return true;

    // choose a separator character
    std::vector< std::string >::const_iterator i;
    char separator             = '\0';
    const char* alt_separators = ";+,:\t\n";
    for( const char* sep_ptr = alt_separators; *sep_ptr; ++sep_ptr )
    {
        bool seen = false;
        for( i = options.begin(); i != options.end(); ++i )
            if( i->find( *sep_ptr, 0 ) != std::string::npos )
            {
                seen = true;
                break;
            }
        if( !seen )
        {
            separator = *sep_ptr;
            break;
        }
    }
    if( !separator )
    {
        std::cerr << "Error: cannot find separator character for options string" << std::endl;
        return false;
    }
    if( separator != ';' )
    {
        opts = ";";
        opts += separator;
    }

    // concatenate options
    i = options.begin();
    opts += *i;
    for( ++i; i != options.end(); ++i )
    {
        opts += separator;
        opts += *i;
    }

    return true;
}
bool parse_id_list ( const char *  string,
std::set< int > &  results 
)

Definition at line 390 of file size.cpp.

{
    bool okay   = true;
    char* mystr = strdup( string );
    for( const char* ptr = strtok( mystr, "," ); ptr; ptr = strtok( 0, "," ) )
    {
        char* endptr;
        long val = strtol( ptr, &endptr, 0 );
        if( endptr == ptr || val <= 0 )
        {
            std::cerr << "Not a valid id: " << ptr << std::endl;
            okay = false;
            break;
        }

        long val2 = val;
        if( *endptr == '-' )
        {
            const char* sptr = endptr + 1;
            val2             = strtol( sptr, &endptr, 0 );
            if( endptr == sptr || val2 <= 0 )
            {
                std::cerr << "Not a valid id: " << sptr << std::endl;
                okay = false;
                break;
            }
            if( val2 < val )
            {
                std::cerr << "Invalid id range: " << ptr << std::endl;
                okay = false;
                break;
            }
        }

        if( *endptr )
        {
            std::cerr << "Unexpected character: " << *endptr << std::endl;
            okay = false;
            break;
        }

        for( ; val <= val2; ++val )
            if( !results.insert( (int)val ).second ) std::cerr << "Warning: duplicate Id: " << val << std::endl;
    }

    free( mystr );
    return okay;
}
static void print_stats ( set_stats stats) [static]

Definition at line 276 of file size.cpp.

References stat_set::count, dashes(), set_stats::edge_uses, moab::CN::EntityTypeName(), stat_set::max, MBEDGE, MBMAXTYPE, stat_set::min, set_stats::nodes, stat_set::sqr, set_stats::stats, and stat_set::sum.

Referenced by main().

{
    const char* edge_use_name = "1D Side";
    const char* vertex_name   = "Vertex";

    bool have_some = stats.edge_uses.count > 0 || stats.nodes > 0;
    for( int i = 0; i < MBMAXTYPE; ++i )
        if( stats.stats[i].count > 0 ) have_some = true;

    if( !have_some )
    {
        std::cout << "NO MESH" << std::endl;
        return;
    }

    // get field widths
    unsigned type_width  = std::max( strlen( vertex_name ), strlen( edge_use_name ) );
    unsigned count_width = 5;
    unsigned total_width = 5;
    unsigned total_prec  = 2;
    unsigned precision   = 5;
    int total_log        = -10000;

    unsigned node_count_width = (unsigned)( ceil( log10( (double)stats.nodes ) ) ) + 1;
    if( count_width < node_count_width ) count_width = node_count_width;

    for( EntityType i = MBEDGE; i < MBMAXTYPE; ++i )
    {
        stat_set& s = stats.stats[i];

        if( s.count == 0 ) continue;

        unsigned len = strlen( CN::EntityTypeName( i ) );
        if( len > type_width ) type_width = len;

        unsigned cw = (unsigned)( ceil( log10( (double)s.count ) ) ) + 1;
        if( cw > count_width ) count_width = cw;

        int tl = (unsigned)( ceil( log10( fabs( s.sum ) ) ) ) + 1;
        if( tl > total_log ) total_log = tl;
    }

    if( total_log > (int)total_width || total_log == -10000 )
    {
        total_width = 8;
        total_prec  = 2;
    }
    else if( total_log <= -(int)total_width )
    {
        total_width = -total_log + 5;
        total_prec  = 2;
    }
    else if( total_log < 1 )
    {
        total_width = -total_log + 4;
        total_prec  = -total_log + 1;
    }
    else
    {
        total_width += 2;
    }

    // get terminal width
    unsigned term_width = 80;
#if !defined( _MSC_VER ) && !defined( __MINGW32__ )
    struct winsize size;
    if( ioctl( fileno( stdout ), TIOCGWINSZ, (char*)&size ) == 0 ) term_width = size.ws_col;
    if( !term_width ) term_width = 80;
#endif
    assert( term_width > 7 + type_width + count_width + total_width );

    term_width -= 7;  // spaces
    term_width -= type_width;
    term_width -= count_width;
    term_width -= total_width;
    unsigned val_width = term_width / 5;
    if( val_width < 8 ) val_width = 8;

    printf( "%*s %*s %*s %*s %*s %*s %*s %*s\n", type_width, "type", count_width, "count", total_width, "total",
            val_width, "minimum", val_width, "average", val_width, "rms", val_width, "maximum", val_width, "std.dev." );

    printf( "%*s ", type_width, dashes( type_width ) );
    printf( "%*s ", count_width, dashes( count_width ) );
    printf( "%*s ", total_width, dashes( total_width ) );
    printf( "%*s ", val_width, dashes( val_width ) );
    printf( "%*s ", val_width, dashes( val_width ) );
    printf( "%*s ", val_width, dashes( val_width ) );
    printf( "%*s ", val_width, dashes( val_width ) );
    printf( "%*s\n", val_width, dashes( val_width ) );

    for( EntityType i = MBEDGE; i <= MBMAXTYPE; ++i )
    {
        stat_set& s = ( i == MBMAXTYPE ) ? stats.edge_uses : stats.stats[i];

        if( s.count == 0 ) continue;

        double tmp_dbl = s.sqr / s.count - s.sum * s.sum / (double)s.count / (double)s.count;
        if( tmp_dbl < 0.0 )
        {
            if( tmp_dbl < -100.0 * DBL_EPSILON )
                std::cout << "WARNING: stat values dubious, s^2 - sig_s = " << tmp_dbl << std::endl;
            tmp_dbl = 0.0;
        }

        printf( "%*s %*ld %*.*g %*.*g %*.*g %*.*g %*.*g %*.*g\n", type_width,
                i == MBMAXTYPE ? edge_use_name : CN::EntityTypeName( i ), count_width, s.count, total_width, total_prec,
                s.sum, val_width, precision, s.min, val_width, precision, s.sum / s.count, val_width, precision,
                sqrt( s.sqr / s.count ), val_width, precision, s.max, val_width, precision, sqrt( tmp_dbl ) );
    }
    printf( "%*s %*lu\n", type_width, vertex_name, count_width, (unsigned long)stats.nodes );

    puts( "" );
}
static void print_tag_counts ( const std::vector< TagCounts > &  counts) [static]

Definition at line 232 of file size.cpp.

References dashes(), moab::CN::EntityTypeName(), MBMAXTYPE, MBVERTEX, and t.

Referenced by main().

{
    if( counts.empty() )
    {
        printf( "<No tags>\n" );
        return;
    }

    int widths[MBMAXTYPE] = { 0 };
    int name_width        = 0;
    for( size_t i = 0; i < counts.size(); ++i )
    {
        if( counts[i].name.length() > (unsigned)name_width ) name_width = counts[i].name.length();
        for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
            if( counts[i].counts[t] != 0 ) widths[t] = std::max( 8, (int)strlen( CN::EntityTypeName( t ) ) );
    }

    if( 0 == std::min_element( widths, widths + MBMAXTYPE ) )
    {
        printf( "<No Tagged Entities>\n" );
        return;
    }

    // Print header line
    const char* name_title = "Tag Name";
    if( (unsigned)name_width < strlen( name_title ) ) name_width = strlen( name_title );
    printf( "%*s", name_width, name_title );
    for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
        if( widths[t] ) printf( " %*s", widths[t], CN::EntityTypeName( t ) );
    printf( "\n%s", dashes( name_width ) );
    for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
        if( widths[t] ) printf( " %s", dashes( widths[t] ) );
    printf( "\n" );

    // print data
    for( size_t i = 0; i < counts.size(); ++i )
    {
        printf( "%*s", name_width, counts[i].name.c_str() );
        for( EntityType t = MBVERTEX; t != MBMAXTYPE; ++t )
            if( widths[t] ) printf( " %*d", widths[t], counts[i].counts[t] );
        printf( "\n" );
    }
}
static void print_time ( int  clk_per_sec,
const char *  prefix,
clock_t  ticks,
std::ostream &  stream 
) [static]

Definition at line 539 of file size.cpp.

{
    ticks *= clk_per_sec / 100;
    clock_t centi   = ticks % 100;
    clock_t seconds = ticks / 100;
    stream << prefix;
    if( seconds < 120 ) { stream << ( ticks / 100 ) << "." << centi << "s" << std::endl; }
    else
    {
        clock_t minutes = ( seconds / 60 ) % 60;
        clock_t hours   = ( seconds / 3600 );
        seconds %= 60;
        if( hours ) stream << hours << "h";
        if( minutes ) stream << minutes << "m";
        if( seconds || centi ) stream << seconds << "." << centi << "s";
        stream << " (" << ( ticks / 100 ) << "." << centi << "s)" << std::endl;
    }
}
static void print_usage ( const char *  name,
std::ostream &  stream 
) [static]

Definition at line 43 of file size.cpp.

{
    stream << "Usage: " << name << " <options> <input_file> [<input_file2> ...]" << std::endl
           << "Options: " << std::endl
           << "\t-f             - List available file formats and exit." << std::endl
           << "\t-g             - print counts by geometric owner" << std::endl
           << "\t-h             - Print this help text and exit." << std::endl
           << "\t-l             - Print counts of mesh" << std::endl
           << "\t-ll            - Verbose listing of every entity" << std::endl
           << "\t-m             - Print counts per block/boundary" << std::endl
           << "\t-O option      - Specify read option." << std::endl
#ifdef MOAB_HAVE_MPI
           << "\t-p[0|1|2]      - Read in parallel[0], optionally also doing resolve_shared_ents "
              "(1) and exchange_ghosts (2)"
           << std::endl
#endif
           << "\t-t             - Print counts by tag" << std::endl
           << "\t-T             - Time read of files." << std::endl
           << "\t--             - treat all subsequent options as file names" << std::endl
           << "\t                 (allows file names beginning with '-')" << std::endl;
}
void reset_times ( )

Definition at line 576 of file size.cpp.

References abs_time, sys_time, and usr_time.

Referenced by main().

{
    tms timebuf;
    abs_time = times( &timebuf );
    usr_time = timebuf.tms_utime;
    sys_time = timebuf.tms_stime;
}
static void usage_error ( const char *  name) [static]

Definition at line 530 of file size.cpp.

References print_usage(), and USAGE_ERROR.

Referenced by main().

{
    print_usage( name, std::cerr );
#ifdef MOAB_HAVE_MPI
    MPI_Finalize();
#endif
    exit( USAGE_ERROR );
}
void write_times ( std::ostream &  stream)

Definition at line 584 of file size.cpp.

References abs_time, print_time(), sys_time, and usr_time.

Referenced by main().

{
    clock_t usr_tm, sys_tm, abs_tm;
    tms timebuf;
    abs_tm = times( &timebuf );
    usr_tm = timebuf.tms_utime;
    sys_tm = timebuf.tms_stime;
    print_time( sysconf( _SC_CLK_TCK ), "  real:   ", abs_tm - abs_time, stream );
    print_time( sysconf( _SC_CLK_TCK ), "  user:   ", usr_tm - usr_time, stream );
    print_time( sysconf( _SC_CLK_TCK ), "  system: ", sys_tm - sys_time, stream );
    abs_time = abs_tm;
    usr_time = usr_tm;
    sys_time = sys_tm;
}

Variable Documentation

clock_t abs_time

Definition at line 558 of file size.cpp.

const char* geom_type_names[] = { "Vertex", "Curve", "Surface", "Volume" }

Definition at line 601 of file size.cpp.

Referenced by main().

Definition at line 65 of file size.cpp.

const char* mesh_type_names[] = { "Dirichlet Set", "Neumann Set", "Material Set" }

Definition at line 602 of file size.cpp.

Referenced by main().

Definition at line 603 of file size.cpp.

Referenced by main().

clock_t sys_time

Definition at line 558 of file size.cpp.

clock_t usr_time

Definition at line 558 of file size.cpp.

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