Mesh Oriented datABase
(version 5.4.1)
Array-based unstructured mesh datastructure
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00001 /** \mainpage The Mesh-Oriented datABase (MOAB) 00002 * 00003 * MOAB is a component for representing and evaluating mesh data. MOAB can store 00004 * structured and unstructured mesh, consisting of elements in the finite element “zoo”, 00005 * along with polygons and polyhedra. The functional interface to MOAB is simple, consisting 00006 * of only four fundamental data types. This data is quite powerful, allowing the representation 00007 * of most types of metadata commonly found on the mesh. MOAB is optimized for efficiency in 00008 * space and time, based on access to mesh in chunks rather than through individual entities, 00009 * while also versatile enough to support individual entity access. 00010 * 00011 * The MOAB data model consists of the following four fundamental types: mesh interface instance, 00012 * mesh entities (vertex, edge, tri, etc.), sets, and tags. Entities are addressed through handles 00013 * rather than pointers, to allow the underlying representation of an entity to change without 00014 * changing the handle to that entity. Sets are arbitrary groupings of mesh entities and other 00015 * sets. Sets also support parent/child relationships as a relation distinct from sets containing 00016 * other sets. The directed-graph provided by set parent/child relationships is useful for modeling 00017 * topological relations from a geometric model and other metadata. Tags are named data which can 00018 * be assigned to the mesh as a whole, individual entities, or sets. Tags are a mechanism for 00019 * attaching data to individual entities and sets are a mechanism for describing relations between 00020 * entities; the combination of these two mechanisms is a powerful yet simple interface for 00021 * representing metadata or application-specific data. For example, sets and tags can be used 00022 * together to describe geometric topology, boundary condition, and inter-processor interface 00023 * groupings in a mesh. 00024 * 00025 * MOAB's API is documented in the moab::Interface class. Questions and comments should be sent to 00026 * moab-dev _at_ mcs.anl.gov. 00027 * 00028 * \ref userguide "User's Guide" 00029 * 00030 * \ref developerguide "Developer's Guide" 00031 * 00032 * \ref metadata "I/O and Meta-Data Storage Conventions in MOAB" 00033 * 00034 * <a href="pages.html">Full List of Documents</a> 00035 */ 00036 00037 #ifndef MOAB_INTERFACE_HPP 00038 #define MOAB_INTERFACE_HPP 00039 00040 #include "win32_config.h" 00041 00042 #define MOAB_API_VERSION 1.01 00043 #define MOAB_API_VERSION_STRING "1.01" 00044 00045 #include "moab/MOABConfig.h" 00046 #include "moab/Forward.hpp" 00047 #include "moab/Range.hpp" 00048 #include "moab/Compiler.hpp" 00049 #include "moab/ErrorHandler.hpp" 00050 00051 // include files 00052 #include <string> 00053 #include <functional> 00054 #include <typeinfo> 00055 00056 //! component architecture definitions 00057 #ifdef XPCOM_MB 00058 00059 #ifndef __gen_nsISupports_h__ 00060 #include "nsISupports.h" 00061 #endif 00062 00063 #ifndef NS_NO_VTABLE 00064 #define NS_NO_VTABLE 00065 #endif 00066 00067 #define MBINTERFACE_IID_STR "f728830e-1dd1-11b2-9598-fb9f414f2465" 00068 00069 #define MBINTERFACE_IID \ 00070 { \ 00071 0xf728830e, 0x1dd1, 0x11b2, \ 00072 { \ 00073 0x95, 0x98, 0xfb, 0x9f, 0x41, 0x4f, 0x24, 0x65 \ 00074 } \ 00075 } 00076 00077 #endif 00078 00079 #include "moab/UnknownInterface.hpp" 00080 #define MB_INTERFACE_VERSION "2.0.0" 00081 namespace moab 00082 { 00083 00084 static const MBuuid IDD_MBCore = MBuuid( 0x8956e0a, 0xc300, 0x4005, 0xbd, 0xf6, 0xc3, 0x4e, 0xf7, 0x1f, 0x5a, 0x52 ); 00085 00086 /** 00087 * \class Interface Interface.hpp "moab/Interface.hpp" 00088 * \brief Main interface class to MOAB 00089 * \nosubgrouping 00090 */ 00091 #if defined( XPCOM_MB ) 00092 class NS_NO_VTABLE Interface : public nsISupports 00093 { 00094 #else 00095 class MOAB_EXPORT Interface : public UnknownInterface 00096 { 00097 #endif 00098 00099 public: 00100 #ifdef XPCOM_MB 00101 NS_DEFINE_STATIC_IID_ACCESSOR( MBINTERFACE_IID ) 00102 #endif 00103 00104 /** \name Interface */ 00105 00106 /**@{*/ 00107 00108 //! constructor 00109 Interface() {} 00110 00111 //! destructor 00112 virtual ~Interface() {} 00113 00114 //! return the entity set representing the whole mesh 00115 virtual EntityHandle get_root_set() = 0; 00116 00117 //! Get a pointer to an internal MOAB interface 00118 //!\return NULL if not found, iterface pointer otherwise 00119 virtual ErrorCode query_interface_type( const std::type_info& iface_type, void*& iface ) = 0; 00120 00121 //! Get a pointer to an internal MOAB interface 00122 //!\return NULL if not found, iterface pointer otherwise 00123 template < class IFace > 00124 ErrorCode query_interface( IFace*& ptr ) 00125 { 00126 void* tmp_ptr; 00127 ErrorCode result = query_interface_type( typeid( IFace ), tmp_ptr ); 00128 ptr = reinterpret_cast< IFace* >( tmp_ptr ); 00129 return result; 00130 } 00131 00132 //! Release reference to MB interface 00133 virtual ErrorCode release_interface_type( const std::type_info& iface_type, void* iface ) = 0; 00134 00135 template < class IFace > 00136 ErrorCode release_interface( IFace* interface ) 00137 { 00138 return release_interface_type( typeid( IFace ), interface ); 00139 } 00140 00141 //! Release reference to MB interface 00142 00143 //! Returns the major.minor version number of the interface 00144 /** 00145 \param version_string If non-NULL, will be filled in with a string, possibly 00146 containing implementation-specific information 00147 */ 00148 virtual float api_version( std::string* version_string = NULL ); 00149 00150 //! Returns the major.minor version number of the implementation 00151 /** 00152 \param version_string If non-NULL, will be filled in with a string, possibly 00153 containing implementation-specific information 00154 */ 00155 virtual float impl_version( std::string* version_string = NULL ) = 0; 00156 00157 /**@}*/ 00158 00159 /** \name Type and id */ 00160 00161 /**@{*/ 00162 00163 //! Returns the entity type of an EntityHandle. 00164 /** Returns the EntityType (ie, MBVERTEX, MBQUAD, MBHEX ) of <em>handle</em>. 00165 \param handle The EntityHandle you want to find the entity type of. 00166 \return type The entity type of <em>handle</em>. 00167 00168 Example: \code 00169 EntityType type = type_from_handle( handle); 00170 if( type == MBHEX ) ... \endcode 00171 */ 00172 virtual EntityType type_from_handle( const EntityHandle handle ) const = 0; 00173 00174 //! Returns the id from an EntityHandle. 00175 /** \param handle The EntityHandle you want to find the id of. 00176 \return id Id of <em>handle</em> 00177 00178 Example: \code 00179 int id = id_from_handle(handle); \endcode 00180 */ 00181 virtual EntityID id_from_handle( const EntityHandle handle ) const = 0; 00182 00183 //! Returns the topological dimension of an entity 00184 /** Returns the topological dimension of an entity. 00185 \param handle The EntityHandle you want to find the dimension of. 00186 \return type The topological dimension of <em>handle</em>. 00187 00188 Example: \code 00189 int dim = dimension_from_handle( handle); 00190 if( dim == 0 ) ... \endcode 00191 */ 00192 virtual int dimension_from_handle( const EntityHandle handle ) const = 0; 00193 00194 //! Gets an entity handle from the data base, if it exists, according to type and id. 00195 /** Given an EntiyType and an id, this function gets the existent EntityHandle. 00196 If no such EntityHandle exits, it returns MB_ENTITY_NOT_FOUND 00197 and sets handle to zero. 00198 \param type The type of the EntityHandle to retrieve from the database. 00199 \param id The id of the EntityHandle to retrieve from the database. 00200 \param handle An EntityHandle of type <em>type</em> and <em>id</em>. 00201 00202 Example: \code 00203 EntityType handle; 00204 ErrorCode error_code = handle_from_id(MBTRI, 204, handle ); 00205 if( error_code == MB_ENTITY_NOT_FOUND ) ... \endcode 00206 */ 00207 virtual ErrorCode handle_from_id( const EntityType type, const EntityID, EntityHandle& handle ) const = 0; 00208 00209 /**@}*/ 00210 00211 /** \name Mesh input/output */ 00212 00213 /**@{*/ 00214 00215 //! Loads a mesh file into the database. 00216 /** Loads the file 'file_name'; types of mesh which can be loaded 00217 depend on modules available at MB compile time. If 00218 active_block_id_list is NULL, all material sets (blocks in the 00219 ExodusII jargon) are loaded. Individual material sets can be 00220 loaded by specifying their ids in 'active_block_id_list'. All 00221 nodes are loaded on first call for a given file. Subsequent 00222 calls for a file load any material sets not loaded in previous 00223 calls. 00224 \param file_name Name of file to load into database. 00225 \param active_block_id_list Material set/block ids to load. 00226 If NULL, ALL blocks of <em>file_name</em> are loaded. 00227 \param num_blocks Number of blocks in active_block_id_list 00228 00229 Example: \code 00230 std::vector<int> active_block_id_list; 00231 int active_block_id_list[] = {1, 4, 10}; 00232 load_mesh( "temp.gen", active_block_id_list, 3 ); //load blocks 1, 4, 10 00233 \endcode 00234 */ 00235 virtual ErrorCode load_mesh( const char* file_name, 00236 const int* active_block_id_list = NULL, 00237 const int num_blocks = 0 ) = 0; 00238 00239 /**\brief Load or import a file. 00240 * 00241 * Load a MOAB-native file or import data from some other supported 00242 * file format. 00243 * 00244 *\param file_name The location of the file to read. 00245 *\param file_set If non-null, this argument must be a pointer to 00246 * a valid entity set handle. All entities read from 00247 * the file will be added to this set. File metadata 00248 * will be added to tags on the set. 00249 *\param options A list of string options, separated by semicolons (;). 00250 * See README.IO for more information. Options are typically 00251 * format-specific options or parallel options. If an 00252 * option value is unrecognized but the file read otherwise 00253 * succeeded, MB_UNHANDLED_OPTION will be returned. 00254 *\param set_tag_name The name of a tag used to designate the subset 00255 * of the file to read. The name must correspond to 00256 * data in the file that will be instantiated in MOAB 00257 * as a tag. 00258 *\param set_tag_values If the name specified in 'set_tag_name' 00259 * corresponds to a tag with a single integer value, 00260 * the values in this tag can be used to further 00261 * limit the subset of data written from the file to 00262 * only those entities or sets that have a value for 00263 * the tag that is one of the values in this array. 00264 *\param num_set_tag_values The length of set_tag_values. 00265 * 00266 *\Note file_set is passed by pointer rather than by value (where a 00267 * zero handle value would indicate no set) so as to intentionally 00268 * break compatibility with the previous version of this function 00269 * because the behavior with respect to the file set was changed. 00270 * The file_set is now an input-only argument. The previous 00271 * version of this function unconditionally created a set and 00272 * passed it back to the caller via a non-const reference argument. 00273 */ 00274 virtual ErrorCode load_file( const char* file_name, 00275 const EntityHandle* file_set = 0, 00276 const char* options = 0, 00277 const char* set_tag_name = 0, 00278 const int* set_tag_values = 0, 00279 int num_set_tag_values = 0 ) = 0; 00280 00281 //! Writes mesh to a file. 00282 /** Write mesh to file 'file_name'; if output_list is non-NULL, only 00283 material sets contained in that list will be written. 00284 \param file_name Name of file to write. 00285 \param output_list 1d array of material set handles to write; if 00286 NULL, all sets are written 00287 \param num_sets Number of sets in output_list array 00288 00289 Example: \code 00290 EntityHandle output_list[] = {meshset1, meshset2, meshset3}; 00291 write_mesh( "output_file.gen", output_list, 3 ); \endcode 00292 */ 00293 virtual ErrorCode write_mesh( const char* file_name, 00294 const EntityHandle* output_list = NULL, 00295 const int num_sets = 0 ) = 0; 00296 00297 /**\brief Write or export a file. 00298 * 00299 * Write a MOAB-native file or export data to some other supported 00300 * file format. 00301 * 00302 *\param file_name The location of the file to write. 00303 *\param file_type The type of the file. If this value is NULL, 00304 * then file type will be determined using the 00305 * file name suffix. 00306 *\param options A semicolon-separated list of options. 00307 * See README.IO for more information. Typical options 00308 * include the file type, parallel options, and options 00309 * specific to certain file formats. 00310 *\param output_sets A list of entity sets to write to the file. If 00311 * no sets are sepcified, the default behavior is to 00312 * write all data that is supported by the target file 00313 * type. 00314 *\param num_output_sets The length of the output_sets array. 00315 *\param tag_list A list of tags for which to write the tag data. The 00316 * write may fail if a tag list is specified but the 00317 * target file type is not capable of representing the 00318 * data. If no tags are specified, the default is to 00319 * write whatever data the target file format supports. 00320 *\param num_tags The length of tag_list. 00321 */ 00322 virtual ErrorCode write_file( const char* file_name, 00323 const char* file_type = 0, 00324 const char* options = 0, 00325 const EntityHandle* output_sets = 0, 00326 int num_output_sets = 0, 00327 const Tag* tag_list = 0, 00328 int num_tags = 0 ) = 0; 00329 00330 /**\brief Write or export a file. 00331 * 00332 * Write a MOAB-native file or export data to some other supported 00333 * file format. 00334 * 00335 *\param file_name The location of the file to write. 00336 *\param file_type The type of the file. If this value is NULL, 00337 * then file type will be determined using the 00338 * file name suffix. 00339 *\param options A semicolon-separated list of options. 00340 * See README.IO for more information. Typical options 00341 * include the file type, parallel options, and options 00342 * specific to certain file formats. 00343 *\param output_sets A list of entity sets to write to the file. If 00344 * no sets are sepcified, the default behavior is to 00345 * write all data that is supported by the target file 00346 * type. 00347 *\param tag_list A list of tags for which to write the tag data. The 00348 * write may fail if a tag list is specified but the 00349 * target file type is not capable of representing the 00350 * data. If no tags are specified, the default is to 00351 * write whatever data the target file format supports. 00352 *\param num_tags The length of tag_list. 00353 */ 00354 virtual ErrorCode write_file( const char* file_name, 00355 const char* file_type, 00356 const char* options, 00357 const Range& output_sets, 00358 const Tag* tag_list = 0, 00359 int num_tags = 0 ) = 0; 00360 00361 //! Deletes all mesh entities from this MB instance 00362 virtual ErrorCode delete_mesh() = 0; 00363 00364 /**@}*/ 00365 00366 /** \name Coordinates and dimensions */ 00367 00368 /**@{*/ 00369 00370 //! Get blocked vertex coordinates for all vertices 00371 /** Blocked = all x, then all y, etc. 00372 00373 Example: \code 00374 std::vector<double> coords; 00375 get_vertex_coordinates(coords); 00376 double xavg = 0; 00377 for (int i = 0; i < coords.size()/3; i++) xavg += coords[i]; \endcode 00378 */ 00379 virtual ErrorCode get_vertex_coordinates( std::vector< double >& coords ) const = 0; 00380 00381 //! get pointers to coordinate data 00382 /** BEWARE, THIS GIVES ACCESS TO MOAB'S INTERNAL STORAGE, USE WITH CAUTION! 00383 * This function returns pointers to MOAB's internal storage for vertex coordinates. 00384 * Access is similar to tag_iterate, see documentation for that function for details 00385 * about arguments and a coding example. 00386 */ 00387 virtual ErrorCode coords_iterate( Range::const_iterator iter, 00388 /**< Iterator to first entity you want coordinates for */ 00389 Range::const_iterator end, 00390 /**< Iterator to last entity you want coordinates for */ 00391 double*& xcoords_ptr, 00392 /**< Pointer to x coordinate storage for these entities */ 00393 double*& ycoords_ptr, 00394 /**< Pointer to y coordinate storage for these entities */ 00395 double*& zcoords_ptr, 00396 /**< Pointer to z coordinate storage for these entities */ 00397 int& count 00398 /**< Number of entities for which returned pointers are valid/contiguous */ 00399 ) = 0; 00400 00401 //! Gets xyz coordinate information for range of vertices 00402 /** Length of 'coords' should be at least 3*<em>entity_handles.size()</em> before making call. 00403 \param entity_handles Range of vertex handles (error if not of type MBVERTEX) 00404 \param coords Array used to return x, y, and z coordinates. 00405 00406 Example: \code 00407 double coords[3]; 00408 get_coords( vertex_handle, coords ); 00409 std::cout<<"x = "<<coords[0]<<std::endl; 00410 std::cout<<"y = "<<coords[1]<<std::endl; 00411 std::cout<<"z = "<<coords[2]<<std::endl; \endcode 00412 */ 00413 virtual ErrorCode get_coords( const Range& entity_handles, double* coords ) const = 0; 00414 00415 //! Gets xyz coordinate information for vector of vertices 00416 /** Identical to range-based function, except entity handles are specified using a 1d vector 00417 and vector length. 00418 */ 00419 virtual ErrorCode get_coords( const EntityHandle* entity_handles, 00420 const int num_entities, 00421 double* coords ) const = 0; 00422 00423 /**\brief Get vertex coordinates in blocks by dimension. 00424 * 00425 * Get the X, Y, and Z coordinates of a group of vertices. 00426 * Coordinates are returned in separate arrays, one for each 00427 * dimension. Each coordinate array must be of sufficient 00428 * length to hold the coordinate value for each vertex. Array 00429 * pointers may be NULL if coordinates in the the respective 00430 * dimension are not desired. 00431 *\param entity_handles The group of vertex handles for which to get the coordiantes. 00432 *\param x_coords Output: the X coordinate of each vertex. May be NULL. 00433 *\param y_coords Output: the Y coordinate of each vertex. May be NULL. 00434 *\param z_coords Output: the Z coordinate of each vertex. May be NULL. 00435 */ 00436 virtual ErrorCode get_coords( const Range& entity_handles, 00437 double* x_coords, 00438 double* y_coords, 00439 double* z_coords ) const = 0; 00440 00441 //! Sets the xyz coordinates for a vector of vertices 00442 /** An error is returned if any entities in the vector are not vertices. 00443 \param entity_handles EntityHandle's to set coordinates of. (Must be of type MBVERTEX) 00444 \param num_entities Number of entities in entity_handles 00445 \param coords Array containing new xyz coordinates. 00446 00447 Example: \code 00448 double coords[3] = {0.234, -2.52, 12.023}; 00449 set_coords( entity_handle, 1, coords ); \endcode 00450 */ 00451 virtual ErrorCode set_coords( const EntityHandle* entity_handles, 00452 const int num_entities, 00453 const double* coords ) = 0; 00454 00455 //! Sets the xyz coordinates for a vector of vertices 00456 /** An error is returned if any entities in the vector are not vertices. 00457 \param entity_handles EntityHandle's to set coordinates of. (Must be of type MBVERTEX) 00458 \param num_entities Number of entities in entity_handles 00459 \param coords Array containing new xyz coordinates. 00460 00461 Example: \code 00462 double coords[3] = {0.234, -2.52, 12.023}; 00463 set_coords( entity_handle, 1, coords ); \endcode 00464 */ 00465 virtual ErrorCode set_coords( Range entity_handles, const double* coords ) = 0; 00466 00467 //! Get overall geometric dimension 00468 virtual ErrorCode get_dimension( int& dim ) const = 0; 00469 00470 //! Set overall geometric dimension 00471 /** Returns error if setting to 3 dimensions, mesh has been created, and 00472 * there are only 2 dimensions on that mesh 00473 */ 00474 virtual ErrorCode set_dimension( const int dim ) = 0; 00475 00476 /**@}*/ 00477 00478 /** \name Connectivity */ 00479 00480 /**@{*/ 00481 00482 //! get pointers to connectivity data 00483 /** BEWARE, THIS GIVES ACCESS TO MOAB'S INTERNAL STORAGE, USE WITH CAUTION! 00484 * This function returns a pointer to MOAB's internal storage for entity connectivity. 00485 * For each contiguous sub-range of entities, those entities are guaranteed to have 00486 * the same number of vertices (since they're in the same ElementSequence). Count 00487 * is given in terms of entities, not elements of the connectivity array. 00488 * Access is similar to tag_iterate, see documentation for that function for details 00489 * about arguments and a coding example. 00490 */ 00491 virtual ErrorCode connect_iterate( Range::const_iterator iter, 00492 /**< Iterator to first entity you want coordinates for */ 00493 Range::const_iterator end, 00494 /**< Iterator to last entity you want coordinates for */ 00495 EntityHandle*& connect, 00496 /**< Pointer to connectivity storage for these entities */ 00497 int& verts_per_entity, 00498 /**< Number of vertices per entity in this block of entities */ 00499 int& count 00500 /**< Number of entities for which returned pointers are valid/contiguous */ 00501 ) = 0; 00502 00503 //! Get the connectivity array for all entities of the specified entity type 00504 /** This function returns the connectivity of just the corner vertices, no higher order nodes 00505 \param type The entity type of elements whose connectivity is to be returned 00506 \param connect an STL vector used to return connectivity array (in the form of entity 00507 handles) 00508 */ 00509 virtual ErrorCode get_connectivity_by_type( const EntityType type, std::vector< EntityHandle >& connect ) const = 0; 00510 00511 //! Gets the connectivity for a vector of elements 00512 /** Same as vector-based version except range is returned (unordered!) 00513 */ 00514 virtual ErrorCode get_connectivity( const EntityHandle* entity_handles, 00515 const int num_handles, 00516 Range& connectivity, 00517 bool corners_only = false ) const = 0; 00518 00519 //! Gets the connectivity for elements 00520 /** Same as vector-based version except range is returned (unordered!) 00521 */ 00522 virtual ErrorCode get_connectivity( const Range& entity_handles, 00523 Range& connectivity, 00524 bool corners_only = false ) const = 0; 00525 00526 //! Gets the connectivity for a vector of elements 00527 /** Corner vertices or all vertices (including higher-order nodes, if any) are returned. 00528 For non-element handles (ie, MB_MeshSets), returns an error. Connectivity data is copied 00529 from the database into the vector. Connectivity of a vertex is the same vertex. 00530 The nodes in <em>connectivity</em> are properly ordered according to that element's 00531 canonical ordering. 00532 \param entity_handles Vector of element handles to get connectivity of. 00533 \param num_handles Number of entity handles in <em>entity_handles</em> 00534 \param connectivity Vector in which connectivity of <em>entity_handles</em> is returned. 00535 \param corners_only If true, returns only corner vertices, otherwise returns all of them 00536 (including any higher-order vertices) \param offsets If non-NULL, offsets->[i] stores the 00537 index of the start of entity i's connectivity, with the last value in offsets one beyond the 00538 last entry 00539 */ 00540 virtual ErrorCode get_connectivity( const EntityHandle* entity_handles, 00541 const int num_handles, 00542 std::vector< EntityHandle >& connectivity, 00543 bool corners_only = false, 00544 std::vector< int >* offsets = NULL ) const = 0; 00545 00546 //! Gets a pointer to constant connectivity data of <em>entity_handle</em> 00547 /** Sets <em>number_nodes</em> equal to the number of nodes of the <em> 00548 entity_handle </em>. Faster then the other <em>get_connectivity</em> function because no 00549 data is copied. The nodes in 'connectivity' are properly ordered according to the 00550 element's canonical ordering. 00551 00552 00553 Example: \code 00554 const EntityHandle* conn; 00555 int number_nodes = 0; 00556 get_connectivity( entity_handle, conn, number_nodes ); \endcode 00557 00558 Example2: \code 00559 std::vector<EntityHandle> sm_storage; 00560 const EntityHandle* conn; 00561 int number_nodes; 00562 get_connectivity( handle, conn, number_nodes, false, &sm_storage ); 00563 if (conn == &sm_storage[0]) 00564 std::cout << "Structured mesh element" << std::endl; 00565 \endcode 00566 00567 \param entity_handle EntityHandle to get connectivity of. 00568 \param connectivity Array in which connectivity of <em>entity_handle</em> is returned. 00569 \param num_nodes Number of MeshVertices in array <em>connectivity</em>. 00570 \param corners_only If true, returns only corner vertices, otherwise returns all of them 00571 (including any higher-order vertices) \param storage Some elements (e.g. structured mesh) may 00572 not have an explicit connectivity list. This function will normally return 00573 MB_NOT_IMPLEMENTED for such elements. However, if the caller passes in a non-null value for 00574 this argument, space will be allocated in this vector for the connectivity data and the 00575 connectivity pointer will be set to the data in this vector. 00576 */ 00577 virtual ErrorCode get_connectivity( const EntityHandle entity_handle, 00578 const EntityHandle*& connectivity, 00579 int& num_nodes, 00580 bool corners_only = false, 00581 std::vector< EntityHandle >* storage = 0 ) const = 0; 00582 00583 //! Sets the connectivity for an EntityHandle. For non-element handles, return an error. 00584 /** Connectivity is stored exactly as it is ordered in vector <em>connectivity</em>. 00585 \param entity_handle EntityHandle to set connectivity of. 00586 \param connect Vector containing new connectivity of <em>entity_handle</em>. 00587 \param num_connect Number of vertices in <em>connect</em> 00588 00589 Example: \code 00590 EntityHandle conn[] = {node1, node2, node3}; 00591 set_connectivity( tri_element, conn, 3 ); \endcode 00592 */ 00593 virtual ErrorCode set_connectivity( const EntityHandle entity_handle, 00594 EntityHandle* connect, 00595 const int num_connect ) = 0; 00596 00597 /**@}*/ 00598 00599 /** \name Adjacencies */ 00600 00601 /**@{*/ 00602 00603 //! Get the adjacencies associated with a vector of entities to entities of a specfied 00604 //! dimension. 00605 /** \param from_entities Vector of EntityHandle to get adjacencies of. 00606 \param num_entities Number of entities in <em>from_entities</em> 00607 \param to_dimension Dimension of desired adjacencies 00608 \param create_if_missing If true, MB will create any entities of the specfied dimension 00609 which have not yet been created (only useful when <em>to_dimension < 00610 dim(*from_entities)</em>) \param adj_entities STL vector to which adjacent entities are 00611 appended. \param operation_type Enum of INTERSECT or UNION. Defines whether to take the 00612 intersection or union of the set of adjacencies recovered for the from_entities. 00613 00614 The adjacent entities in vector <em>adjacencies</em> are not in any particular 00615 order. 00616 00617 Example: \code 00618 std::vector<EntityHandle> adjacencies, from_entities = {hex1, hex2}; 00619 // generate all edges for these two hexes 00620 get_adjacencies( from_entities, 2, 1, true, adjacencies, Interface::UNION); 00621 adjacencies.clear(); 00622 // now find the edges common to both hexes 00623 get_adjacencies( from_entities, 2, 1, false, adjacencies, Interface::INTERSECT); 00624 \endcode 00625 */ 00626 00627 virtual ErrorCode get_adjacencies( const EntityHandle* from_entities, 00628 const int num_entities, 00629 const int to_dimension, 00630 const bool create_if_missing, 00631 std::vector< EntityHandle >& adj_entities, 00632 const int operation_type = Interface::INTERSECT ) = 0; 00633 00634 //! Get the adjacencies associated with a vector of entities to entities of a specfied 00635 //! dimension. 00636 /** Identical to vector-based get_adjacencies function, except results are returned in a 00637 range instead of a vector. 00638 */ 00639 virtual ErrorCode get_adjacencies( const EntityHandle* from_entities, 00640 const int num_entities, 00641 const int to_dimension, 00642 const bool create_if_missing, 00643 Range& adj_entities, 00644 const int operation_type = Interface::INTERSECT ) = 0; 00645 00646 //! Get the adjacencies associated with a range of entities to entities of a specfied dimension. 00647 /** Identical to vector-based get_adjacencies function, except "from" entities specified in a 00648 range instead of a vector. 00649 */ 00650 virtual ErrorCode get_adjacencies( const Range& from_entities, 00651 const int to_dimension, 00652 const bool create_if_missing, 00653 Range& adj_entities, 00654 const int operation_type = Interface::INTERSECT ) = 0; 00655 00656 //! Adds adjacencies between "from" and "to" entities. 00657 /** \param from_handle Entities on which the adjacencies are placed 00658 \param to_handles Vector of entities referenced by new adjacencies added to 00659 <em>from_handle</em> \param num_handles Number of entities in <em>to_handles</em> \param 00660 both_ways If true, add the adjacency information in both directions; if false, adjacencies 00661 are added only to <em>from_handle</em> 00662 */ 00663 virtual ErrorCode add_adjacencies( const EntityHandle from_handle, 00664 const EntityHandle* to_handles, 00665 const int num_handles, 00666 bool both_ways ) = 0; 00667 00668 //! Adds adjacencies; same as vector-based, but with range instead 00669 virtual ErrorCode add_adjacencies( const EntityHandle from_handle, Range& adjacencies, bool both_ways ) = 0; 00670 00671 //! Removes adjacencies between handles. 00672 /** Adjacencies in both directions are removed. 00673 \param from_handle Entity from which adjacencies are being removed. 00674 \param to_handles Entities to which adjacencies are being removed. 00675 \param num_handles Number of handles in <em>to_handles</em> 00676 */ 00677 virtual ErrorCode remove_adjacencies( const EntityHandle from_handle, 00678 const EntityHandle* to_handles, 00679 const int num_handles ) = 0; 00680 00681 /**\brief Get a ptr to adjacency lists 00682 * Get a pointer to adjacency lists. These lists are std::vector<EntityHandle>, which are 00683 * pointed to by adjs[i]. Adjacencies are not guaranteed to be in order of increasing 00684 * dimension. Only a const version of this function is given, because adjacency data is managed 00685 * more carefully in MOAB and should be treated as read-only by applications. If adjacencies 00686 * have not yet been initialized, adjs_ptr will be NULL (i.e. adjs_ptr == NULL). There may also 00687 * be NULL entries for individual entities, i.e. adjs_ptr[i] == NULL. \param iter Iterator to 00688 * beginning of entity range desired \param end End iterator for which adjacencies are requested 00689 * \param adjs_ptr Pointer to pointer to const std::vector<EntityHandle>; each member of that 00690 * array is the vector of adjacencies for this entity \param count Number of entities in the 00691 * contiguous chunk starting from *iter 00692 */ 00693 virtual ErrorCode adjacencies_iterate( Range::const_iterator iter, 00694 Range::const_iterator end, 00695 const std::vector< EntityHandle >**& adjs_ptr, 00696 int& count ) = 0; 00697 /**@}*/ 00698 00699 //! Enumerated type used in get_adjacencies() and other functions 00700 enum 00701 { 00702 INTERSECT, 00703 UNION 00704 }; 00705 00706 /** \name Getting entities */ 00707 00708 /**@{*/ 00709 00710 //! Retrieves all entities of a given topological dimension in the database or meshset. 00711 /** Appends entities to list passed in. 00712 \param meshset Meshset whose entities are being queried (zero if query is for entire mesh). 00713 \param dimension Topological dimension of entities desired. 00714 \param entities Range in which entities of dimension <em>dimension</em> are returned. 00715 \param recursive If true, meshsets containing meshsets are queried recursively. Returns 00716 the contents of meshsets, but not the meshsets themselves if true. 00717 00718 Example: \code 00719 // get 1d (edge) elements in the entire mesh 00720 Range edges; 00721 get_entities_by_dimension( 0, 1, edges ); 00722 \endcode 00723 */ 00724 virtual ErrorCode get_entities_by_dimension( const EntityHandle meshset, 00725 const int dimension, 00726 Range& entities, 00727 const bool recursive = false ) const = 0; 00728 00729 //! Retrieves all entities of a given topological dimension in the database or meshset. 00730 /** Appends entities to list passed in. 00731 \param meshset Meshset whose entities are being queried (zero if query is for entire mesh). 00732 \param dimension Topological dimension of entities desired. 00733 \param entities Range in which entities of dimension <em>dimension</em> are returned. 00734 \param recursive If true, meshsets containing meshsets are queried recursively. Returns 00735 the contents of meshsets, but not the meshsets themselves if true. 00736 00737 Example: \code 00738 // get 1d (edge) elements in the entire mesh 00739 Range edges; 00740 get_entities_by_dimension( 0, 1, edges ); 00741 \endcode 00742 */ 00743 virtual ErrorCode get_entities_by_dimension( const EntityHandle meshset, 00744 const int dimension, 00745 std::vector< EntityHandle >& entities, 00746 const bool recursive = false ) const = 0; 00747 00748 //! Retrieve all entities of a given type in the database or meshset. 00749 /** Appends entities to list passed in. 00750 \param meshset Meshset whose entities are being queried (zero if query is for entire mesh). 00751 \param type Type of entities to be returned 00752 \param entities Range in which entities of type <em>type</em> are returned. 00753 \param recursive If true, meshsets containing meshsets are queried recursively. Returns 00754 the contents of meshsets, but not the meshsets themselves. Specifying 00755 both recursive=true and type=MBENTITYSET is an error, as it would always 00756 result in an empty list. 00757 00758 Example: \code 00759 // get the quadrilateral elements in meshset 00760 Range quads; 00761 get_entities_by_type( meshset, MBQUAD, quads ); 00762 \endcode 00763 */ 00764 virtual ErrorCode get_entities_by_type( const EntityHandle meshset, 00765 const EntityType type, 00766 Range& entities, 00767 const bool recursive = false ) const = 0; 00768 00769 //! Retrieve all entities of a given type in the database or meshset. 00770 /** Appends entities to list passed in. 00771 \param meshset Meshset whose entities are being queried (zero if query is for entire mesh). 00772 \param type Type of entities to be returned 00773 \param entities Range in which entities of type <em>type</em> are returned. 00774 \param recursive If true, meshsets containing meshsets are queried recursively. Returns 00775 the contents of meshsets, but not the meshsets themselves. Specifying 00776 both recursive=true and type=MBENTITYSET is an error, as it would always 00777 result in an empty list. 00778 00779 Example: \code 00780 // get the quadrilateral elements in meshset 00781 Range quads; 00782 get_entities_by_type( meshset, MBQUAD, quads ); 00783 \endcode 00784 */ 00785 virtual ErrorCode get_entities_by_type( const EntityHandle meshset, 00786 const EntityType type, 00787 std::vector< EntityHandle >& entities, 00788 const bool recursive = false ) const = 0; 00789 00790 //! Retrieve entities in the database or meshset which have any or all of the tag(s) and 00791 //! (optionally) value(s) specified. 00792 /** \param meshset Meshset whose entities are being queried (zero if query is for entire mesh). 00793 \param type Type of entities to be returned 00794 \param tag_handles Vector of tag handles entities must have 00795 \param values Vector of pointers to values of tags in <em>tag_handles</em> 00796 \param num_tags Number of tags and values in <em>tag_handles</em> and <em>values</em> 00797 \param entities Range in which entities are returned. 00798 \param condition Boolean condition, either Interface::UNION or Interface::INTERSECT 00799 \param recursive If true, meshsets containing meshsets are queried recursively. Returns 00800 the contents of meshsets, but not the meshsets themselves. Specifying 00801 both recursive=true and type=MBENTITYSET is an error, as it would always 00802 result in an empty list. 00803 00804 If Interface::UNION is specified as the condition, entities with <em>any</em> of the tags 00805 and values specified are returned. If Interface::INTERSECT is specified, only entities with 00806 <em>all</em> of the tags/values are returned. 00807 00808 If <em>values</em> is NULL, entities with the specified tags and any corresponding values 00809 are returned. Note that if <em>values</em> is non-NULL, it is a vector of <em>pointers</em> 00810 to tag values. 00811 00812 Example: \code 00813 // get the dirichlet sets in a mesh 00814 Range dir_sets; 00815 Tag dir_tag; 00816 tag_get_handle(DIRICHLET_SET_TAG_NAME, dir_tag, 1, MB_TYPE_INTEGER); 00817 get_entities_by_type_and_tag(0, MBENTITYSET, &dir_tag, NULL, 1, dir_sets, 00818 Interface::UNION); 00819 \endcode 00820 */ 00821 virtual ErrorCode get_entities_by_type_and_tag( const EntityHandle meshset, 00822 const EntityType type, 00823 const Tag* tag_handles, 00824 const void* const* values, 00825 const int num_tags, 00826 Range& entities, 00827 const int condition = Interface::INTERSECT, 00828 const bool recursive = false ) const = 0; 00829 00830 //! Returns all entities in the data base or meshset, in a range (order not preserved) 00831 /** Appends entities to list passed in. 00832 \param meshset Meshset whose entities are being queried (zero if query is for the entire 00833 mesh). \param entities Range in which entities are returned. \param recursive If true, 00834 meshsets containing meshsets are queried recursively. Returns the contents of meshsets, but 00835 not the meshsets themselves if true. 00836 00837 Example: \code 00838 Range entities; 00839 // get all non-meshset entities in meshset, including in contained meshsets 00840 get_entities_by_handle(meshset, entities, true); 00841 \endcode 00842 */ 00843 virtual ErrorCode get_entities_by_handle( const EntityHandle meshset, 00844 Range& entities, 00845 const bool recursive = false ) const = 0; 00846 00847 //! Returns all entities in the data base or meshset, in a vector (order preserved) 00848 /** Appends entities to list passed in. 00849 \param meshset Meshset whose entities are being queried (zero if query is for the entire 00850 mesh). \param entities STL vector in which entities are returned. \param recursive If true, 00851 meshsets containing meshsets are queried recursively. Returns the contents of meshsets, but 00852 not the meshsets themselves if true. 00853 00854 Example: \code 00855 std::vector<EntityHandle> entities; 00856 // get all non-meshset entities in meshset, including in contained meshsets 00857 get_entities_by_handle(meshset, entities, true); 00858 \endcode 00859 */ 00860 virtual ErrorCode get_entities_by_handle( const EntityHandle meshset, 00861 std::vector< EntityHandle >& entities, 00862 const bool recursive = false ) const = 0; 00863 00864 //! Return the number of entities of given dimension in the database or meshset 00865 /** \param meshset Meshset whose entities are being queried (zero if query is for the entire 00866 mesh). \param dimension Dimension of entities desired. \param num_entities Number of entities 00867 of the given dimension \param recursive If true, meshsets containing meshsets are queried 00868 recursively. Returns the contents of meshsets, but not the meshsets themselves if true. 00869 */ 00870 virtual ErrorCode get_number_entities_by_dimension( const EntityHandle meshset, 00871 const int dimension, 00872 int& num_entities, 00873 const bool recursive = false ) const = 0; 00874 00875 //! Retrieve the number of entities of a given type in the database or meshset. 00876 /** Identical to get_entities_by_dimension, except returns number instead of entities 00877 \param meshset Meshset whose entities are being queried (zero if query is for entire mesh). 00878 \param type Type of entities to be returned 00879 \param num_entities Number of entities of type <em>type</em> 00880 \param recursive If true, meshsets containing meshsets are queried recursively. Returns 00881 the contents of meshsets, but not the meshsets themselves. Specifying 00882 both recursive=true and type=MBENTITYSET is an error, as it would always 00883 result in an empty list. 00884 */ 00885 virtual ErrorCode get_number_entities_by_type( const EntityHandle meshset, 00886 const EntityType type, 00887 int& num_entities, 00888 const bool recursive = false ) const = 0; 00889 00890 //! Retrieve number of entities in the database or meshset which have any or all of the 00891 //! tag(s) and (optionally) value(s) specified. 00892 /** Identical to get_entities_by_type_and_tag, except number instead of entities are returned 00893 \param meshset Meshset whose entities are being queried (zero if query is for entire mesh). 00894 \param type Type of entities to be returned 00895 \param tag_handles Vector of tag handles entities must have 00896 \param values Vector of pointers to values of tags in <em>tag_handles</em> 00897 \param num_tags Number of tags and values in <em>tag_handles</em> and <em>values</em> 00898 \param num_entities Range in which number of entities are returned. 00899 \param recursive If true, meshsets containing meshsets are queried recursively. Returns 00900 the contents of meshsets, but not the meshsets themselves. Specifying 00901 both recursive=true and type=MBENTITYSET is an error, as it would always 00902 result in an empty list. 00903 */ 00904 virtual ErrorCode get_number_entities_by_type_and_tag( const EntityHandle meshset, 00905 const EntityType type, 00906 const Tag* tag_handles, 00907 const void* const* values, 00908 const int num_tags, 00909 int& num_entities, 00910 const int condition = Interface::INTERSECT, 00911 const bool recursive = false ) const = 0; 00912 00913 //! Returns number of entities in the data base or meshset 00914 /** Identical to get-entities_by_handle, except number instead of entities are returned 00915 \param meshset Meshset whose entities are being queried (zero if query is for the entire 00916 mesh). \param num_entities Range in which num_entities are returned. \param recursive If 00917 true, meshsets containing meshsets are queried recursively. Returns the contents of 00918 meshsets, but not the meshsets themselves if true. 00919 */ 00920 virtual ErrorCode get_number_entities_by_handle( const EntityHandle meshset, 00921 int& num_entities, 00922 const bool recursive = false ) const = 0; 00923 00924 /**@}*/ 00925 00926 /** \name Mesh modification */ 00927 00928 /**@{*/ 00929 00930 //! Create an element based on the type and connectivity. 00931 /** Create a new element in the database. Vertices composing this element must already exist, 00932 and connectivity must be specified in canonical order for the given element type. If 00933 connectivity vector is not correct for EntityType <em>type</em> (ie, a vector with 00934 3 vertices is passed in to make an MBQUAD), the function returns MB_FAILURE. 00935 \param type Type of element to create. (MBTET, MBTRI, MBKNIFE, etc.) 00936 \param connectivity 1d vector containing connectivity of element to create. 00937 \param num_vertices Number of vertices in element 00938 \param element_handle Handle representing the newly created element in the database. 00939 00940 Example: \code 00941 EntityHandle quad_conn[] = {vertex0, vertex1, vertex2, vertex3}; 00942 EntityHandle quad_handle = 0; 00943 create_element( MBQUAD, quad_conn, 4, quad_handle ); \endcode 00944 */ 00945 virtual ErrorCode create_element( const EntityType type, 00946 const EntityHandle* connectivity, 00947 const int num_vertices, 00948 EntityHandle& element_handle ) = 0; 00949 00950 //! Creates a vertex with the specified coordinates. 00951 /** 00952 \param coordinates Array that has 3 doubles in it. 00953 \param entity_handle EntityHandle representing the newly created vertex in the database. 00954 00955 Example: \code 00956 double coordinates[] = {1.034, 23.23, -0.432}; 00957 EntityHandle new_handle = 0; 00958 create_vertex( coordinates, entity_handle ); \endcode 00959 */ 00960 virtual ErrorCode create_vertex( const double coordinates[3], EntityHandle& entity_handle ) = 0; 00961 00962 //! Create a set of vertices with the specified coordinates 00963 /** 00964 \param coordinates Array that has 3*n doubles in it. 00965 \param nverts Number of vertices to create 00966 \param entity_handles Range passed back with new vertex handles 00967 */ 00968 virtual ErrorCode create_vertices( const double* coordinates, const int nverts, Range& entity_handles ) = 0; 00969 00970 //! Merge two entities into a single entity 00971 /** Merge two entities into a single entities, with <em>entity_to_keep</em> receiving 00972 adjacencies that were on <em>entity_to_remove</em>. 00973 \param entity_to_keep Entity to be kept after merge 00974 \param entity_to_remove Entity to be merged into <em>entity_to_keep</em> 00975 \param auto_merge If false, <em>entity_to_keep</em> and <em>entity_to_remove</em> must share 00976 the same lower-dimensional entities; if true, MB tries to merge those entities automatically 00977 \param delete_removed_entity If true, <em>entity_to_remove</em> is deleted after merge is 00978 complete 00979 */ 00980 virtual ErrorCode merge_entities( EntityHandle entity_to_keep, 00981 EntityHandle entity_to_remove, 00982 bool auto_merge, 00983 bool delete_removed_entity ) = 0; 00984 00985 //! Removes entities in a vector from the data base. 00986 /** If any of the entities are contained in any meshsets, it is removed from those meshsets 00987 which were created with MESHSET_TRACK_OWNER option bit set. Tags for <em>entity</em> are 00988 removed as part of this function. 00989 \param entities 1d vector of entities to delete 00990 \param num_entities Number of entities in 1d vector 00991 */ 00992 virtual ErrorCode delete_entities( const EntityHandle* entities, const int num_entities ) = 0; 00993 00994 //! Removes entities in a range from the data base. 00995 /** If any of the entities are contained in any meshsets, it is removed from those meshsets 00996 which were created with MESHSET_TRACK_OWNER option bit set. Tags for <em>entity</em> are 00997 removed as part of this function. 00998 \param entities Range of entities to delete 00999 */ 01000 virtual ErrorCode delete_entities( const Range& entities ) = 0; 01001 01002 /**@}*/ 01003 01004 /** \name Information */ 01005 01006 /**@{*/ 01007 01008 //! List entities to standard output 01009 /** Lists all data pertaining to entities (i.e. vertex coordinates if vertices, connectivity if 01010 elements, set membership if set). Useful for debugging, but output can become quite long 01011 for large databases. 01012 */ 01013 virtual ErrorCode list_entities( const Range& entities ) const = 0; 01014 01015 //! List entities, or number of entities in database, to standard output 01016 /** Lists data pertaining to entities to standard output. If <em>entities</em> is NULL and 01017 <em>num_entities</em> is zero, lists only the number of entities of each type in the 01018 database. If <em>entities</em> is NULL and <em>num_entities</em> is non-zero, lists all 01019 information for all entities in the database. 01020 \param entities 1d vector of entities to list 01021 \param num_entities Number of entities in 1d vector 01022 */ 01023 virtual ErrorCode list_entities( const EntityHandle* entities, const int num_entities ) const = 0; 01024 01025 //! List a single entity; no header printed 01026 /** Lists a single entity, including its connectivity and its adjacencies. 01027 * No header is printed, because calling function might print information between header 01028 * and information printed by this function. 01029 * \param entity The entity to be listed. 01030 */ 01031 virtual ErrorCode list_entity( const EntityHandle entity ) const = 0; 01032 01033 //! Return information about the last error 01034 /** \param info std::string into which information on the last error is written. 01035 */ 01036 virtual ErrorCode get_last_error( std::string& info ) const = 0; 01037 01038 //! Return string representation of given error code 01039 /** \param code Error code for which string is wanted 01040 */ 01041 virtual std::string get_error_string( const ErrorCode code ) const = 0; 01042 01043 /**\brief Calculate amount of memory used to store MOAB data 01044 * 01045 * This function calculates the amount of memory used to store 01046 * MOAB data. 01047 * 01048 * There are two possible values for each catagory of memory use. 01049 * The exact value and the amortized value. The exact value is the 01050 * amount of memory used to store the data for the specified entities. 01051 * The amortized value includes the exact value and an amortized 01052 * estimate of the memory consumed in overhead for storing the values 01053 * (indexing structures, access structures, etc.) 01054 * 01055 * Note: If ent_array is NULL and total_amortized_storage is *not* NULL, 01056 * the total memory used by MOAB for storing data all will be 01057 * returned in the address pointed to by total_amortized_storage. 01058 * 01059 *\param ent_array Array of entities for which to estimate the memory use. 01060 * If NULL, estimate is done for all entities. 01061 *\param num_ents The length of ent_array. Not used if ent_rray is NULL. 01062 *\param total_(amortized_)storage The sum of the memory entity, adjacency, 01063 * and all tag storage. 01064 *\param (amortized_)entity_storage The storage for the entity definitions 01065 * (connectivity arrays for elements, coordinates for 01066 * vertices, list storage within sets, etc.) 01067 *\param (amortized_)adjacency_storage The storage for adjacency data. 01068 *\param tag_array An array of tags for which to calculate the memory use. 01069 *\param num_tags The lenght of tag_array 01070 *\param (amortized_)tag_storage If tag_array is not NULL, then one value 01071 * for each tag specifying the memory used for storing 01072 * that tag. If tag_array is NULL and this value is not, 01073 * the location at which to store the total memory used 01074 * for all tags. 01075 */ 01076 virtual void estimated_memory_use( const EntityHandle* ent_array = 0, 01077 unsigned long num_ents = 0, 01078 unsigned long long* total_storage = 0, 01079 unsigned long long* total_amortized_storage = 0, 01080 unsigned long long* entity_storage = 0, 01081 unsigned long long* amortized_entity_storage = 0, 01082 unsigned long long* adjacency_storage = 0, 01083 unsigned long long* amortized_adjacency_storage = 0, 01084 const Tag* tag_array = 0, 01085 unsigned num_tags = 0, 01086 unsigned long long* tag_storage = 0, 01087 unsigned long long* amortized_tag_storage = 0 ) = 0; 01088 01089 /**\brief Calculate amount of memory used to store MOAB data 01090 * 01091 * This function calculates the amount of memory used to store 01092 * MOAB data. 01093 * 01094 * There are two possible values for each catagory of memory use. 01095 * The exact value and the amortized value. The exact value is the 01096 * amount of memory used to store the data for the specified entities. 01097 * The amortized value includes the exact value and an amortized 01098 * estimate of the memory consumed in overhead for storing the values 01099 * (indexing structures, access structures, etc.) 01100 * 01101 *\param ents Entities for which to estimate the memory use. 01102 *\param total_(amortized_)storage The sum of the memory entity, adjacency, 01103 * and all tag storage. 01104 *\param (amortized_)entity_storage The storage for the entity definitions 01105 * (connectivity arrays for elements, coordinates for 01106 * vertices, list storage within sets, etc.) 01107 *\param (amortized_)adjacency_storage The storage for adjacency data. 01108 *\param tag_array An array of tags for which to calculate the memory use. 01109 *\param num_tags The lenght of tag_array 01110 *\param (amortized_)tag_storage If tag_array is not NULL, then one value 01111 * for each tag specifying the memory used for storing 01112 * that tag. If tag_array is NULL and this value is not, 01113 * the location at which to store the total memory used 01114 * for all tags. 01115 */ 01116 virtual void estimated_memory_use( const Range& ents, 01117 unsigned long long* total_storage = 0, 01118 unsigned long long* total_amortized_storage = 0, 01119 unsigned long long* entity_storage = 0, 01120 unsigned long long* amortized_entity_storage = 0, 01121 unsigned long long* adjacency_storage = 0, 01122 unsigned long long* amortized_adjacency_storage = 0, 01123 const Tag* tag_array = 0, 01124 unsigned num_tags = 0, 01125 unsigned long long* tag_storage = 0, 01126 unsigned long long* amortized_tag_storage = 0 ) = 0; 01127 /**@}*/ 01128 01129 /** \name Higher-order elements */ 01130 01131 /**@{*/ 01132 01133 //! function object for recieving events from MB of higher order nodes added to entities 01134 class MOAB_EXPORT HONodeAddedRemoved 01135 { 01136 public: 01137 //! Constructor 01138 HONodeAddedRemoved() {} 01139 01140 //! Destructor 01141 virtual ~HONodeAddedRemoved() {} 01142 01143 //! node_added called when a node was added to an element's connectivity array 01144 //! note: connectivity array of element may be incomplete (corner nodes will exist always) 01145 /** 01146 * \param node Node being added 01147 * \param element Element node is being added to 01148 */ 01149 virtual void node_added( EntityHandle node, EntityHandle element ) = 0; 01150 01151 //! node_added called when a node was added to an element's connectivity array 01152 //! note: connectivity array of element may be incomplete (corner nodes will exist always) 01153 /** 01154 * \param node Node being removed. 01155 */ 01156 virtual void node_removed( EntityHandle node ) = 0; 01157 }; 01158 01159 //! Convert entities to higher-order elements by adding mid nodes 01160 /** This function causes MB to create mid-nodes on all edges, faces, and element interiors 01161 for all entities in <em>meshset</em>. Higher order nodes appear in an element's 01162 connectivity array according to the algorithm described in the documentation for Mesh. If 01163 <em>HONodeAddedRemoved</em> function is input, this function is called to notify the 01164 application of nodes being added/removed from the mesh. \param meshset The set of entities 01165 being converted \param mid_edge If true, mid-edge nodes are created \param mid_face If true, 01166 mid-face nodes are created \param mid_region If true, mid-element nodes are created \param 01167 function_object If non-NULL, the node_added or node_removed functions on this object are 01168 called when nodes are added or removed from an entity, respectively 01169 */ 01170 virtual ErrorCode convert_entities( const EntityHandle meshset, 01171 const bool mid_edge, 01172 const bool mid_face, 01173 const bool mid_region, 01174 HONodeAddedRemoved* function_object = 0 ) = 0; 01175 01176 //! Returns the side number, in canonical ordering, of <em>child</em> with respect to 01177 //! <em>parent</em> 01178 /** Given a parent and child entity, returns the canonical ordering information side number, 01179 sense, and offset of <em>child</em> with respect to <em>parent</em>. This function returns 01180 MB_FAILURE if <em>child</em> is not related to <em>parent</em>. This function does *not* 01181 create adjacencies between <em>parent</em> and <em>child</em>. 01182 \param parent Parent entity to be compared 01183 \param child Child entity to be compared 01184 \param side_number Side number in canonical ordering of <em>child</em> with respect to 01185 <em>parent</em> 01186 \param sense Sense of <em>child</em> with respect to <em>parent</em>, assuming ordering of 01187 <em>child</em> as given by get_connectivity called on <em>child</em>; sense is 1, -1 01188 for forward/reverse sense, resp. 01189 \param offset Offset between first vertex of <em>child</em> and first vertex of side 01190 <em>side_number</em> on <em>parent</em> 01191 */ 01192 virtual ErrorCode side_number( const EntityHandle parent, 01193 const EntityHandle child, 01194 int& side_number, 01195 int& sense, 01196 int& offset ) const = 0; 01197 01198 //! Find the higher-order node on a subfacet of an entity 01199 /** Given an entity and the connectivity and type of one of its subfacets, find the 01200 high order node on that subfacet, if any. The number of vertices in <em>subfacet_conn</em> 01201 is derived from <em>subfacet_type</em> and the canonical numbering for that type. 01202 \param parent_handle The element whose subfacet is being queried 01203 \param subfacet_conn The connectivity of the subfacet being queried 01204 \param subfacet_type The type of subfacet being queried 01205 \param high_order_node If the subfacet has a high-order node defined on 01206 <em>parent_handle</em>, the handle for that node. 01207 */ 01208 virtual ErrorCode high_order_node( const EntityHandle parent_handle, 01209 const EntityHandle* subfacet_conn, 01210 const EntityType subfacet_type, 01211 EntityHandle& high_order_node ) const = 0; 01212 01213 //! Return the handle of the side element of a given dimension and index 01214 /** Given a parent entity and a target dimension and side number, return the handle of 01215 the entity corresponding to that side. If an entity has not been created to represent 01216 that side, one is not created by this function, and zero is returned in 01217 <em>target_entity</em>. \param source_entity The entity whose side is being queried. \param 01218 dim The topological dimension of the side being queried. \param side_number The canonical 01219 index of the side being queried. \param target_entity The handle of the entity representing 01220 this side, if any. 01221 */ 01222 virtual ErrorCode side_element( const EntityHandle source_entity, 01223 const int dim, 01224 const int side_number, 01225 EntityHandle& target_entity ) const = 0; 01226 01227 /**@}*/ 01228 01229 /** \name Tags */ 01230 01231 /**@{*/ 01232 01233 /**\brief Get a tag handle, possibly creating the tag 01234 * 01235 * Get a handle used to associate application-defined values 01236 * with MOAB entities. If the tag does not already exist then 01237 * \c flags should contain exactly one of \c MB_TAG_SPARSE, 01238 * \c MB_TAG_DENSE, \c MB_TAG_MESH unless \c type is MB_TYPE_BIT, 01239 * which implies \c MB_TAG_BIT storage. 01240 * . 01241 *\param name The tag name 01242 *\param size Tag size as number of values of of data type per entity 01243 * (or number of bytes if \c MB_TAG_BYTES is passed in flags). If \c 01244 *MB_TAG_VARLEN is specified, this value is taken to be the size of the default value if one is 01245 *specified and is otherwise ignored. \param type The type of the data (used for IO) 01246 *\param tag_handle Output: the resulting tag handle. 01247 *\param flags Bitwise OR of values from TagType 01248 *\param default_value Optional default value for tag. 01249 *\param created Optional returned boolean indicating that the tag 01250 * was created. 01251 *\return - \c MB_ALREADY_ALLOCATED if tag exists and \c MB_TAG_EXCL is specified, or 01252 *default values do not match (and \c MB_TAG_ANY or \c MB_TAG_DFTOK not specified). 01253 * - \c MB_TAG_NOT_FOUND if tag does not exist and \c MB_TAG_CREAT is not 01254 *specified 01255 * - \c MB_INVALID_SIZE if tag value size is not a multiple of the size of the 01256 *data type (and \c MB_TAG_ANY not specified). 01257 * - \c MB_TYPE_OUT_OF_RANGE invalid or inconsistent parameter 01258 * - \c MB_VARIABLE_DATA_LENGTH if \c MB_TAG_VARLEN and \c default_value is non-null and 01259 * \c default_value_size is not specified. 01260 * 01261 *\NOTE A call to tag_get_handle that includes a default value will fail 01262 * if the tag already exists with a different default value. A call without 01263 * a default value will succeed if the tag already exists, regardless of 01264 * whether or not the existing tag has a default value. 01265 * 01266 * Examples: 01267 * 01268 * Retrieve a handle for an existing tag, returning a non-success error 01269 * code if the tag does not exist or does not store 1 integer value per 01270 * entity: 01271 *\code 01272 * Tag git_tag; 01273 * mb.tag_get_handle( GLOBAL_ID_TAG_NAME, 1, MB_TYPE_INTEGER, gid_tag ); 01274 * \endcode 01275 * Get the tag handle, or create it as a dense tag if it does not already 01276 * exist: 01277 *\code 01278 * Tag gid_tag; 01279 * mb.tag_get_handle( GLOBAL_ID_TAG_NAME, 1, MB_TYPE_INTEGER, gid_tag, MB_TAG_CREAT|MB_TAG_BIT 01280 *); \endcode Create the tag or *fail* if it already exists: \code Tag gid_tag; 01281 * mb.tag_get_handle( GLOBAL_ID_TAG_NAME, 1, MB_TYPE_INTEGER, gid_tag, MB_TAG_EXCL|MB_TAG_DENSE 01282 *); \endcode Get an existing variable length tag, failing if it does not exist or is not 01283 *variable-length or does not contain double values. \code Tag vtag; mb.tag_get_handle( 01284 *tag_name, 0, MB_TYPE_DOUBLE, vtag ); \endcode Get the same variable-length tag, but create it 01285 *with a default value if it doesn't exist. Note that if the tag already exists this call will 01286 *return a non-success error code if the existing tag has a different default value. \code Tag 01287 *vtag; const double default_val = M_PI; const int def_val_len = 1; mb.tag_get_handle( tag_name, 01288 *def_val_len, MB_TYPE_DOUBLE, vtag, MB_TAG_SPARSE|MB_TAG_VARLEN|MB_TAG_CREAT, &default_val ); 01289 * \endcode 01290 */ 01291 virtual ErrorCode tag_get_handle( const char* name, 01292 int size, 01293 DataType type, 01294 Tag& tag_handle, 01295 unsigned flags = 0, 01296 const void* default_value = 0, 01297 bool* created = 0 ) = 0; 01298 01299 /**\brief same as non-const version, except that MB_TAG_CREAT flag is ignored. */ 01300 virtual ErrorCode tag_get_handle( const char* name, 01301 int size, 01302 DataType type, 01303 Tag& tag_handle, 01304 unsigned flags = 0, 01305 const void* default_value = 0 ) const = 0; 01306 01307 //! Get the name of a tag corresponding to a handle 01308 /** \param tag_handle Tag you want the name of. 01309 \param tag_name Name string for <em>tag_handle</em>. 01310 */ 01311 virtual ErrorCode tag_get_name( const Tag tag_handle, std::string& tag_name ) const = 0; 01312 01313 /**\brief Gets the tag handle corresponding to a name 01314 01315 If a tag of that name does not exist, returns MB_TAG_NOT_FOUND 01316 \param tag_name Name of the desired tag. 01317 \param tag_handle Tag handle corresponding to <em>tag_name</em> 01318 */ 01319 virtual ErrorCode tag_get_handle( const char* tag_name, Tag& tag_handle ) const = 0; 01320 01321 //! Get the size of the specified tag in bytes 01322 /** Get the size of the specified tag, in bytes (MB_TAG_SPARSE, MB_TAG_DENSE, MB_TAG_MESH) 01323 \note always returns 1 for bit tags. 01324 \param tag Handle of the desired tag. 01325 \param bytes_per_tag Size of the specified tag 01326 \return - MB_TAG_NOT_FOUND for invalid tag handles 01327 - MB_VARIABLE_DATA_LENGTH for variable-length tags 01328 - MB_SUCCESS otherwise 01329 */ 01330 virtual ErrorCode tag_get_bytes( const Tag tag, int& bytes_per_tag ) const = 0; 01331 01332 //! Get the array length of a tag 01333 /** Get the size of the specified tag, in as the number of values of 01334 the basic type (e.g. number of integer values for each tag value if 01335 the data type is MB_TYPE_INTEGER). Gives number of bits for bit tags 01336 and is the same as \c tag_get_bytes for MB_TYPE_OPAQUE tags. 01337 \param tag Handle of the desired tag. 01338 \param length Size of the specified tag 01339 \return - MB_TAG_NOT_FOUND for invalid tag handles 01340 - MB_VARIABLE_DATA_LENGTH for variable-length tags 01341 - MB_SUCCESS otherwise 01342 */ 01343 virtual ErrorCode tag_get_length( const Tag tag, int& length ) const = 0; 01344 01345 //! Get the type of the specified tag 01346 /** Get the type of the specified tag 01347 \param tag Handle of the desired tag. 01348 \param tag_type Type of the specified tag 01349 */ 01350 virtual ErrorCode tag_get_type( const Tag tag, TagType& tag_type ) const = 0; 01351 01352 /** \brief Get data type of tag. 01353 * 01354 * Get the type of the tag data. The tag is data is assumed to 01355 * be a vector of this type. If the tag data vetcor contains 01356 * more than one value, then the tag size must be a multiple of 01357 * the size of this type. 01358 * \param tag The tag 01359 * \param type The type of the specified tag (output). 01360 */ 01361 virtual ErrorCode tag_get_data_type( const Tag tag, DataType& type ) const = 0; 01362 01363 //! Get the default value of the specified tag 01364 /** Get the default value of the specified tag 01365 \param tag Handle of the desired tag. 01366 \param def_value Pointer to memory where default value of the specified tag is written 01367 \return - MB_ENTITY_NOT_FOUND If no default value is set for tag. 01368 - MB_SUCCESS If success. 01369 - MB_FAILURE If <code>def_val</code> is NULL. 01370 - MB_TAG_NOT_FOUND If <code>tag_handle</code> is invalid. 01371 */ 01372 virtual ErrorCode tag_get_default_value( const Tag tag, void* def_val ) const = 0; 01373 virtual ErrorCode tag_get_default_value( Tag tag, const void*& def_val, int& size ) const = 0; 01374 01375 //! Get handles for all tags defined in the mesh instance 01376 /** Get handles for all tags defined on the mesh instance. 01377 \param tag_handles STL vector of all tags 01378 */ 01379 virtual ErrorCode tag_get_tags( std::vector< Tag >& tag_handles ) const = 0; 01380 01381 //! Get handles for all tags defined on this entity 01382 /** Get handles for all tags defined on this entity; if zero, get all tags defined 01383 on mesh instance 01384 \param entity Entity for which you want tags 01385 \param tag_handles STL vector of all tags defined on <em>entity</em> 01386 */ 01387 virtual ErrorCode tag_get_tags_on_entity( const EntityHandle entity, std::vector< Tag >& tag_handles ) const = 0; 01388 01389 //! Get the value of the indicated tag on the specified entities in the specified vector 01390 /** Get the value of the indicated tag on the specified entities; <em>tag_data</em> must contain 01391 enough space (i.e. tag_size*num_entities bytes) to hold all tag data. MOAB does 01392 <em>not</em> check whether this space is available before writing to it. \note For bit tags, 01393 tag_data must contain one byte per entity. For each entity, the corresponding byte will 01394 contain the tag bits in the lower bit positions and zero bits in the higher. \param 01395 tag_handle Tag whose values are being queried. \param entity_handles 1d vector of entity 01396 handles whose tag values are being queried \param num_entities Number of entities in 1d 01397 vector of entity handles \param tag_data Pointer to memory into which tag data will be 01398 written 01399 */ 01400 virtual ErrorCode tag_get_data( const Tag tag_handle, 01401 const EntityHandle* entity_handles, 01402 int num_entities, 01403 void* tag_data ) const = 0; 01404 01405 //! Get the value of the indicated tag on the specified entities in the specified range 01406 /** Identical to previous function, except entities are specified using a range instead of a 1d 01407 vector. \param tag_handle Tag whose values are being queried. \param entity_handles Range of 01408 entity handles whose tag values are being queried \param tag_data Pointer to memory into 01409 which tag data will be written 01410 */ 01411 virtual ErrorCode tag_get_data( const Tag tag_handle, const Range& entity_handles, void* tag_data ) const = 0; 01412 01413 //! Set the value of the indicated tag on the specified entities in the specified vector 01414 /** Set the value of the indicated tag on the specified entities; <em>tag_data</em> contains the 01415 values, <em>one value per entity in <em>entity_handles</em></em>. 01416 \note For bit tags, tag_data must contain one byte per entity. For each 01417 entity, the tag bits will be read from the lower bits of the 01418 corresponding byte. 01419 \param tag_handle Tag whose values are being set 01420 \param entity_handles 1d vector of entity handles whose tag values are being set 01421 \param num_entities Number of entities in 1d vector of entity handles 01422 \param tag_data Pointer to memory holding tag values to be set, <em>one entry per entity 01423 handle</em> 01424 */ 01425 virtual ErrorCode tag_set_data( Tag tag_handle, 01426 const EntityHandle* entity_handles, 01427 int num_entities, 01428 const void* tag_data ) = 0; 01429 01430 //! Set the value of the indicated tag on the specified entities in the specified range 01431 /** Identical to previous function, except entities are specified using a range instead of a 1d 01432 vector. \param tag_handle Tag whose values are being set \param entity_handles Range of 01433 entity handles whose tag values are being set \param tag_data Pointer to memory holding tag 01434 values to be set, <em>one entry per entity handle</em> 01435 */ 01436 virtual ErrorCode tag_set_data( Tag tag_handle, const Range& entity_handles, const void* tag_data ) = 0; 01437 01438 /**\brief Get pointers to tag data 01439 * 01440 * For a tag, get the values for a list of passed entity handles. 01441 *\note This function may not be used for bit tags. 01442 *\param tag_handle The tag 01443 *\param entity_handles An array of entity handles for which to retreive tag values. 01444 *\param num_entities The length of the 'entity_handles' array. 01445 *\param tag_data An array of 'const void*'. Array must be at least 01446 * 'num_entitities' long. Array is populated (output) 01447 * with pointers to the internal storage for the 01448 * tag value corresponding to each entity handle. 01449 *\param tag_sizes The length of each tag value. Optional for 01450 * fixed-length tags. Required for variable-length tags. 01451 */ 01452 virtual ErrorCode tag_get_by_ptr( const Tag tag_handle, 01453 const EntityHandle* entity_handles, 01454 int num_entities, 01455 const void** tag_data, 01456 int* tag_sizes = 0 ) const = 0; 01457 01458 /**\brief Get pointers to tag data 01459 * 01460 * For a tag, get the values for a list of passed entity handles. 01461 *\note This function may not be used for bit tags. 01462 *\param tag_handle The tag 01463 *\param entity_handles The entity handles for which to retreive tag values. 01464 *\param tag_data An array of 'const void*'. Array is populated (output) 01465 * with pointers to the internal storage for the 01466 * tag value corresponding to each entity handle. 01467 *\param tag_sizes The length of each tag value. Optional for 01468 * fixed-length tags. Required for variable-length tags. 01469 */ 01470 virtual ErrorCode tag_get_by_ptr( const Tag tag_handle, 01471 const Range& entity_handles, 01472 const void** tag_data, 01473 int* tag_sizes = 0 ) const = 0; 01474 01475 /**\brief Set tag data given an array of pointers to tag values. 01476 * 01477 * For a tag, set the values for a list of passed entity handles. 01478 *\note This function may not be used for bit tags. 01479 *\param tag_handle The tag 01480 *\param entity_handles An array of entity handles for which to set tag values. 01481 *\param num_entities The length of the 'entity_handles' array. 01482 *\param tag_data An array of 'const void*'. Array must be at least 01483 * 'num_entitities' long. Array is expected to 01484 * contain pointers to tag values for the corresponding 01485 * EntityHandle in 'entity_handles'. 01486 *\param tag_sizes The length of each tag value. Optional for 01487 * fixed-length tags. Required for variable-length tags. 01488 */ 01489 virtual ErrorCode tag_set_by_ptr( Tag tag_handle, 01490 const EntityHandle* entity_handles, 01491 int num_entities, 01492 void const* const* tag_data, 01493 const int* tag_sizes = 0 ) = 0; 01494 01495 /**\brief Set tag data given an array of pointers to tag values. 01496 * 01497 * For a tag, set the values for a list of passed entity handles. 01498 *\note This function may not be used for bit tags. 01499 *\param tag_handle The tag 01500 *\param entity_handles The entity handles for which to set tag values. 01501 *\param tag_data An array of 'const void*'. Array is expected to 01502 * contain pointers to tag values for the corresponding 01503 * EntityHandle in 'entity_handles'. 01504 *\param tag_sizes The length of each tag value. Optional for 01505 * fixed-length tags. Required for variable-length tags. 01506 */ 01507 virtual ErrorCode tag_set_by_ptr( Tag tag_handle, 01508 const Range& entity_handles, 01509 void const* const* tag_data, 01510 const int* tag_sizes = 0 ) = 0; 01511 01512 /**\brief Set tag data given value. 01513 * 01514 * For a tag, set the values for a list of passed entity handles to 01515 * the same, specified value. 01516 * 01517 *\param tag_handle The tag 01518 *\param entity_handles The entity handles for which to set tag values. 01519 *\param tag_data A pointer to the tag value. 01520 *\param tag_sizes For variable-length tags, the length of the 01521 * tag value. This argument will be ignored for 01522 * fixed-length tags. 01523 */ 01524 virtual ErrorCode tag_clear_data( Tag tag_handle, 01525 const Range& entity_handles, 01526 const void* value, 01527 int value_size = 0 ) = 0; 01528 01529 /**\brief Set tag data given value. 01530 * 01531 * For a tag, set the values for a list of passed entity handles to 01532 * the same, specified value. 01533 * 01534 *\param tag_handle The tag 01535 *\param entity_handles The entity handles for which to set tag values. 01536 *\param tag_data A pointer to the tag value. 01537 *\param tag_sizes For variable-length tags, the length of the 01538 * tag value. This argument will be ignored for 01539 * fixed-length tags. 01540 */ 01541 virtual ErrorCode tag_clear_data( Tag tag_handle, 01542 const EntityHandle* entity_handles, 01543 int num_entity_handles, 01544 const void* value, 01545 int value_size = 0 ) = 0; 01546 01547 //! Delete the data of a vector of entity handles and sparse tag 01548 /** Delete the data of a tag on a vector of entity handles. Only sparse tag data are deleted 01549 with this function; dense tags are deleted by deleting the tag itself using tag_delete. 01550 \param tag_handle Handle of the (sparse) tag being deleted from entity 01551 \param entity_handles 1d vector of entity handles from which the tag is being deleted 01552 \param num_handles Number of entity handles in 1d vector 01553 */ 01554 virtual ErrorCode tag_delete_data( Tag tag_handle, const EntityHandle* entity_handles, int num_handles ) = 0; 01555 01556 //! Delete the data of a range of entity handles and sparse tag 01557 /** Delete the data of a tag on a range of entity handles. Only sparse tag data are deleted 01558 with this function; dense tags are deleted by deleting the tag itself using tag_delete. 01559 \param tag_handle Handle of the (sparse) tag being deleted from entity 01560 \param entity_range Range of entities from which the tag is being deleted 01561 */ 01562 virtual ErrorCode tag_delete_data( Tag tag_handle, const Range& entity_range ) = 0; 01563 01564 /**\brief Access tag data via direct pointer into contiguous blocks 01565 * 01566 * Iteratively obtain direct access to contiguous blocks of tag 01567 * storage. This function cannot be used with bit tags because 01568 * of the compressed bit storage. This function cannot be used 01569 * with variable length tags because it does not provide a mechanism 01570 * to determine the length of the value for each entity. This 01571 * function may be used with sparse tags, but if it is used, it 01572 * will return data for a single entity at a time. 01573 * 01574 *\param tag_handle The handle of the tag for which to access data 01575 *\param iter The first entity for which to return data. 01576 *\param end One past the last entity for which data is desired. 01577 *\param count The number of entities for which data was returned 01578 *\param data_ptr Output: pointer to tag storage. 01579 *\param allocate If true, space for this tag will be allocated, if not it wont 01580 * 01581 *\Note If this function is called for entities for which no tag value 01582 * has been set, but for which a default value exists, it will 01583 * force the allocation of explicit storage for each such entity 01584 * even though MOAB would normally not explicitly store tag values 01585 * for such entities. 01586 * 01587 *\Example: 01588 *\code 01589 * Range ents; // range to iterate over 01590 * Tag tag; // tag for which to access data 01591 * int bytes; 01592 * ErrorCode err = mb.tag_get_size( tag, bytes ); 01593 * if (err) { ... } 01594 * 01595 * ... 01596 * Range::iterator iter = ents.begin(); 01597 * while (iter != ents.end()) { 01598 * int count; 01599 * // get contiguous block of tag dat 01600 * void* ptr; 01601 * err = mb.tag_iterate( tag, iter, ents.end(), count, ptr ); 01602 * if (err) { ... } 01603 * // do something with tag data 01604 * process_Data( ptr, count ); 01605 * // advance to next block of data 01606 * iter += count; 01607 * } 01608 *\endcode 01609 */ 01610 virtual ErrorCode tag_iterate( Tag tag_handle, 01611 Range::const_iterator begin, 01612 Range::const_iterator end, 01613 int& count, 01614 void*& data_ptr, 01615 bool allocate = true ) = 0; 01616 01617 //! Remove a tag from the database and delete all of its associated data 01618 /** Deletes a tag and all associated data. 01619 */ 01620 virtual ErrorCode tag_delete( Tag tag_handle ) = 0; 01621 01622 /**@}*/ 01623 01624 /** \name Sets */ 01625 01626 /**@{*/ 01627 01628 //! Create a new mesh set 01629 /** Create a new mesh set. Meshsets can store entities ordered or unordered. A set can include 01630 entities at most once (MESHSET_SET) or more than once. Meshsets can optionally track its 01631 members using adjacencies (MESHSET_TRACK_OWNER); if set, entities are deleted from tracking 01632 meshsets before being deleted. This adds data to mesh entities, which can be expensive. 01633 \param options Options bitmask for the new meshset, possible values defined above 01634 \param ms_handle Handle for the meshset created 01635 */ 01636 virtual ErrorCode create_meshset( const unsigned int options, EntityHandle& ms_handle, int start_id = 0 ) = 0; 01637 01638 //! Empty a vector of mesh set 01639 /** Empty a mesh set. 01640 \param ms_handles 1d vector of handles of sets being emptied 01641 \param num_meshsets Number of entities in 1d vector 01642 */ 01643 virtual ErrorCode clear_meshset( const EntityHandle* ms_handles, const int num_meshsets ) = 0; 01644 01645 //! Empty a range of mesh set 01646 /** Empty a mesh set. 01647 \param ms_handles Range of handles of sets being emptied 01648 */ 01649 virtual ErrorCode clear_meshset( const Range& ms_handles ) = 0; 01650 01651 //! Get the options of a mesh set 01652 /** Get the options of a mesh set. 01653 \param ms_handle Handle for mesh set being queried 01654 \param options Bit mask in which mesh set options are returned 01655 */ 01656 virtual ErrorCode get_meshset_options( const EntityHandle ms_handle, unsigned int& options ) const = 0; 01657 01658 //! Set the options of a mesh set 01659 /** Set the options of a mesh set. 01660 \param ms_handle Handle for meshset whose options are being changed 01661 \param options Bit mask of options to be used 01662 */ 01663 virtual ErrorCode set_meshset_options( const EntityHandle ms_handle, const unsigned int options ) = 0; 01664 01665 //! Subtract meshsets 01666 /** Subtract <em>meshset2</em> from <em>meshset1</em>, placing the results in meshset1. 01667 \param meshset1 Mesh set being subtracted from, also used to pass back result 01668 \param meshset2 Mesh set being subtracted from <em>meshset1</em> 01669 */ 01670 virtual ErrorCode subtract_meshset( EntityHandle meshset1, const EntityHandle meshset2 ) = 0; 01671 01672 //! Intersect meshsets 01673 /** Intersect <em>meshset1</em> with <em>meshset2</em>, placing the results in meshset1. 01674 \param meshset1 Mesh set being intersected, also used to pass back result 01675 \param meshset2 Mesh set being intersected with <em>meshset1</em> 01676 */ 01677 virtual ErrorCode intersect_meshset( EntityHandle meshset1, const EntityHandle meshset2 ) = 0; 01678 01679 //! Unite meshsets 01680 /** Unite <em>meshset1</em> with <em>meshset2</em>, placing the results in meshset1. 01681 \param meshset1 Mesh set being united, also used to pass back result 01682 \param meshset2 Mesh set being united with <em>meshset1</em> 01683 */ 01684 virtual ErrorCode unite_meshset( EntityHandle meshset1, const EntityHandle meshset2 ) = 0; 01685 01686 //! Add to a meshset entities in specified range 01687 /** Add to a meshset entities in specified range. If <em>meshset</em> has MESHSET_TRACK_OWNER 01688 option set, adjacencies are also added to entities in <em>entities</em>. 01689 \param meshset Mesh set being added to 01690 \param entities Range of entities being added to meshset 01691 */ 01692 virtual ErrorCode add_entities( EntityHandle meshset, const Range& entities ) = 0; 01693 01694 //! Add to a meshset entities in specified vector 01695 /** Add to a meshset entities in specified vector. If <em>meshset</em> has MESHSET_TRACK_OWNER 01696 option set, adjacencies are also added to entities in <em>entities</em>. 01697 \param meshset Mesh set being added to 01698 \param entities 1d vector of entities being added to meshset 01699 \param num_entities Number of entities in 1d vector 01700 */ 01701 virtual ErrorCode add_entities( EntityHandle meshset, const EntityHandle* entities, const int num_entities ) = 0; 01702 01703 //! Remove from a meshset entities in specified range 01704 /** Remove from a meshset entities in specified range. If <em>meshset</em> has 01705 MESHSET_TRACK_OWNER option set, adjacencies in entities in <em>entities</em> are updated. 01706 \param meshset Mesh set being removed from 01707 \param entities Range of entities being removed from meshset 01708 */ 01709 virtual ErrorCode remove_entities( EntityHandle meshset, const Range& entities ) = 0; 01710 01711 //! Remove from a meshset entities in specified vector 01712 /** Remove from a meshset entities in specified vector. If <em>meshset</em> has 01713 MESHSET_TRACK_OWNER option set, adjacencies in entities in <em>entities</em> are updated. 01714 \param meshset Mesh set being removed from 01715 \param entities 1d vector of entities being removed from meshset 01716 \param num_entities Number of entities in 1d vector 01717 */ 01718 virtual ErrorCode remove_entities( EntityHandle meshset, const EntityHandle* entities, const int num_entities ) = 0; 01719 01720 //! Return whether a set contains entities 01721 /** Return whether a set contains entities. Returns true only 01722 * if ALL entities are contained 01723 * \param meshset Mesh set being queried 01724 * \param entities Entities being queried 01725 * \param num_entities Number of entities 01726 * \return bool If true, all entities are contained in set 01727 */ 01728 virtual bool contains_entities( EntityHandle meshset, 01729 const EntityHandle* entities, 01730 int num_entities, 01731 const int operation_type = Interface::INTERSECT ) = 0; 01732 01733 //! Replace entities in a set with other entities 01734 /** Replace entities in a set with other entities 01735 * 01736 * \note Behavior is undefined if an entity handle exists in both the 01737 * old_entities and the new_entities arrays or old_entities 01738 * contains multiple copies of an entity. 01739 * \note If an entity occurs multiple times in an ordered set, all 01740 * occurances will be replaced. 01741 * \note For list-based sets, if not all handles in old_entities 01742 * occcur in the set, the corresponding new_entities will not 01743 * be added and MB_ENTITY_NOT_FOUND will be returned. 01744 * For set-based sets, all entities in new_entities wll be 01745 * added and any contained entities in old_entities will be 01746 * removed, and the return value will be MB_SUCCESS. 01747 * \param meshset Mesh set being modified 01748 * \param old_entities Entities to replace 01749 * \param new_entities New entities to add 01750 * \param num_entities Number of entities in input arrays 01751 * \return - MB_SUCCESS : all entities in old_entities replaced 01752 * - MB_ENTITY_NOT_FOUND : one or more entities in new_entities 01753 * not added to set because corresponding entity 01754 * in old_entities did not occur in the ordered 01755 * set. 01756 * - MB_FAILURE : internal error 01757 */ 01758 virtual ErrorCode replace_entities( EntityHandle meshset, 01759 const EntityHandle* old_entities, 01760 const EntityHandle* new_entities, 01761 int num_entities ) = 0; 01762 /**@}*/ 01763 01764 /** \name Set parents/children */ 01765 01766 /**@{*/ 01767 01768 //! Get parent mesh sets of a mesh set 01769 /** If <em>num_hops</em> is 1, only immediate parents are returned. If <em>num_hops</em> is 01770 zero, all ancenstors are returned. Otherwise, <em>num_hops</em> specifies the maximum number 01771 of generations to traverse. \param meshset The mesh set whose parents are being queried 01772 \param parents STL vector holding the parents returned by this function 01773 \param num_hops Number of generations to traverse (0 = all) 01774 */ 01775 virtual ErrorCode get_parent_meshsets( const EntityHandle meshset, 01776 std::vector< EntityHandle >& parents, 01777 const int num_hops = 1 ) const = 0; 01778 01779 //! Get parent mesh sets of a mesh set 01780 /** If <em>num_hops</em> is 1, only immediate parents are returned. If <em>num_hops</em> is 01781 zero, all ancenstors are returned. Otherwise, <em>num_hops</em> specifies the maximum number 01782 of generations to traverse. \param meshset The mesh set whose parents are being queried 01783 \param parents Range holding the parents returned by this function 01784 \param num_hops Number of generations to traverse (0 = all) 01785 */ 01786 virtual ErrorCode get_parent_meshsets( const EntityHandle meshset, 01787 Range& parents, 01788 const int num_hops = 1 ) const = 0; 01789 01790 //! Get child mesh sets of a mesh set 01791 /** If <em>num_hops</em> is 1, only immediate children are returned. If <em>num_hops</em> is 01792 zero, all ancenstors are returned. Otherwise, <em>num_hops</em> specifies the maximum number 01793 of generations to traverse. \param meshset The mesh set whose children are being queried 01794 \param children STL vector holding the children returned by this function 01795 \param num_hops Number of generations to traverse (0 = all) 01796 */ 01797 virtual ErrorCode get_child_meshsets( const EntityHandle meshset, 01798 std::vector< EntityHandle >& children, 01799 const int num_hops = 1 ) const = 0; 01800 01801 //! Get child mesh sets of a mesh set 01802 /** If <em>num_hops</em> is 1, only immediate children are returned. If <em>num_hops</em> is 01803 zero, all ancenstors are returned. Otherwise, <em>num_hops</em> specifies the maximum number 01804 of generations to traverse. \param meshset The mesh set whose children are being queried 01805 \param children Range holding the children returned by this function 01806 \param num_hops Number of generations to traverse (0 = all) 01807 */ 01808 virtual ErrorCode get_child_meshsets( const EntityHandle meshset, 01809 Range& children, 01810 const int num_hops = 1 ) const = 0; 01811 01812 /**\brief Get mesh sets contained in a mesh set 01813 * 01814 * If <em>num_hops</em> is 1, only immediate contents are returned. 01815 * Otherwise a recursive query of all contained sets is performed, 01816 * returning every visted set. The value of num_hops limites the 01817 * depth of the search, with zero indicating no depth limit. 01818 * 01819 *\param meshset The mesh set whose contents are being queried 01820 *\param contained The result list. 01821 *\param num_hops Number of generations to traverse (0 = all) 01822 */ 01823 virtual ErrorCode get_contained_meshsets( const EntityHandle meshset, 01824 std::vector< EntityHandle >& contained, 01825 const int num_hops = 1 ) const = 0; 01826 01827 /**\brief Get mesh sets contained in a mesh set 01828 * 01829 * If <em>num_hops</em> is 1, only immediate contents are returned. 01830 * Otherwise a recursive query of all contained sets is performed, 01831 * returning every visted set. The value of num_hops limites the 01832 * depth of the search, with zero indicating no depth limit. 01833 * 01834 *\param meshset The mesh set whose contents are being queried 01835 *\param contained The result list. 01836 *\param num_hops Number of generations to traverse (0 = all) 01837 */ 01838 virtual ErrorCode get_contained_meshsets( const EntityHandle meshset, 01839 Range& contained, 01840 const int num_hops = 1 ) const = 0; 01841 01842 //! Get the number of parent mesh sets of a mesh set 01843 /** Identical to get_parent_meshsets, only number is returned instead of actual parents. 01844 \param meshset The mesh set whose parents are being queried 01845 \param number Number of parents 01846 */ 01847 virtual ErrorCode num_parent_meshsets( const EntityHandle meshset, int* number, const int num_hops = 1 ) const = 0; 01848 01849 //! Get the number of child mesh sets of a mesh set 01850 /** Identical to get_child_meshsets, only number is returned instead of actual children. 01851 \param meshset The mesh set whose children are being queried 01852 \param number Number of children 01853 */ 01854 virtual ErrorCode num_child_meshsets( const EntityHandle meshset, int* number, const int num_hops = 1 ) const = 0; 01855 01856 /**\brief Get the number of mesh sets contained in a mesh set 01857 * 01858 * Return the number of sets that would be returned by get_contained_meshsets 01859 * 01860 *\param meshset The initial set to begin the query from. 01861 *\param number (Output) The result count. 01862 *\param num_hops Search depth (0 => unbounded). 01863 */ 01864 virtual ErrorCode num_contained_meshsets( const EntityHandle meshset, 01865 int* number, 01866 const int num_hops = 1 ) const = 0; 01867 01868 //! Add a parent mesh set to a mesh set 01869 /** Make <em>parent_meshset</em> a new parent of <em>child_meshset</em>. This function does 01870 <em>not</em> add a corresponding child link to <em>parent_meshset</em>. 01871 \param child_meshset The child mesh set being given a new parent. 01872 \param parent_meshset The parent being added to <em>child_meshset</em> 01873 */ 01874 virtual ErrorCode add_parent_meshset( EntityHandle child_meshset, const EntityHandle parent_meshset ) = 0; 01875 01876 //! Add a parent mesh sets to a mesh set 01877 /** Make <em>parent_meshset</em> a new parent of <em>child_meshset</em>. This function does 01878 <em>not</em> add a corresponding child link to <em>parent_meshset</em>. 01879 \param child_meshset The child mesh set being given a new parent. 01880 \param parent_meshset The parent being added to <em>child_meshset</em> 01881 */ 01882 virtual ErrorCode add_parent_meshsets( EntityHandle child_meshset, 01883 const EntityHandle* parent_meshsets, 01884 int num_parent_meshsets ) = 0; 01885 01886 //! Add a child mesh set to a mesh set 01887 /** Make <em>child_meshset</em> a new child of <em>parent_meshset</em>. This function does 01888 <em>not</em> add a corresponding parent link to <em>child_meshset</em>. 01889 \param parent_meshset The parent mesh set being given a new child. 01890 \param child_meshset The child being added to <em>parent_meshset</em> 01891 */ 01892 virtual ErrorCode add_child_meshset( EntityHandle parent_meshset, const EntityHandle child_meshset ) = 0; 01893 01894 //! Add a child mesh sets to a mesh set 01895 /** Make <em>child_meshset</em> a new child of <em>parent_meshset</em>. This function does 01896 <em>not</em> add a corresponding parent link to <em>child_meshset</em>. 01897 \param parent_meshset The parent mesh set being given a new child. 01898 \param child_meshset The child being added to <em>parent_meshset</em> 01899 */ 01900 virtual ErrorCode add_child_meshsets( EntityHandle parent_meshset, 01901 const EntityHandle* child_meshsets, 01902 int num_child_meshsets ) = 0; 01903 01904 //! Add parent and child links between mesh sets 01905 /** Makes <em>child_meshset</em> a new child of <em>parent_meshset</em>, and vica versa. 01906 \param parent The parent mesh set being given a new child, and the new parent 01907 \param child The child being given a new parent, and the new child 01908 */ 01909 virtual ErrorCode add_parent_child( EntityHandle parent, EntityHandle child ) = 0; 01910 01911 //! Remove parent and child links between mesh sets 01912 /** Removes parent/child links between <em>child_meshset</em> and <em>parent_meshset</em>. 01913 \param parent The parent mesh set being removed from <em>child</em> 01914 \param child The child mesh set being removed from <em>parent</em> 01915 */ 01916 virtual ErrorCode remove_parent_child( EntityHandle parent, EntityHandle child ) = 0; 01917 01918 //! Remove a parent mesh set from a mesh set 01919 /** Removes <em>parent_meshset</em> from the parents of <em>child_meshset</em>. This function 01920 does <em>not</em> remove a corresponding child link from <em>parent_meshset</em>. \param 01921 child_meshset The child mesh whose parent is being removed \param parent_meshset The parent 01922 being removed from <em>meshset</em> 01923 */ 01924 virtual ErrorCode remove_parent_meshset( EntityHandle child_meshset, const EntityHandle parent_meshset ) = 0; 01925 01926 //! Remove a child mesh set from a mesh set 01927 /** Removes <em>child_meshset</em> from the children of <em>parent_meshset</em>. This function 01928 does <em>not</em> remove a corresponding parent link from <em>child_meshset</em>. \param 01929 parent_meshset The parent mesh set whose child is being removed \param child_meshset The 01930 child being removed from <em>parent_meshset</em> 01931 */ 01932 virtual ErrorCode remove_child_meshset( EntityHandle parent_meshset, const EntityHandle child_meshset ) = 0; 01933 01934 // ! Returns the global id tag; default value is -1 01935 virtual Tag globalId_tag() = 0; 01936 01937 /**@}*/ 01938 01939 /** \name Set iterators */ 01940 01941 /**@{*/ 01942 01943 /** \brief Create an iterator over the set 01944 * Create a new iterator that iterates over entities with the specified type or dimension. 01945 * Only one of ent_type or dim can be set; use dim=-1 or ent_type=MBMAXTYPE for the other. 01946 * Iterators for list-type (ordered) sets are stable over set modification, unless entity 01947 * removed or deleted is the one at the current position of the iterator. If the check_valid 01948 * parameter is passed as true, entities are checked for validity before being passed back by 01949 * get_next_entities function (checking entity validity can have a non-negligible cost). 01950 * 01951 * Iterators returned by this function can be deleted using the normal C++ delete function. 01952 * After creating the iterator through this function, further interactions are through methods 01953 * on the SetIterator class. 01954 * \param meshset The entity set associated with this iterator (use 0 for whole instance) 01955 * \param ent_type Entity type associated with this iterator 01956 * \param ent_dim Dimension associated with this iterator 01957 * \param chunk_size Chunk size of the iterator 01958 * \param check_valid If true, entities are checked for validity before being returned 01959 */ 01960 01961 virtual ErrorCode create_set_iterator( EntityHandle meshset, 01962 EntityType ent_type, 01963 int ent_dim, 01964 int chunk_size, 01965 bool check_valid, 01966 SetIterator*& set_iter ) = 0; 01967 /**@}*/ 01968 01969 // ************************ Interface options controllable by user *************** 01970 01971 /** \name Sequence Option controllers */ 01972 01973 /**@{*/ 01974 01975 /** \brief Interface to control memory allocation for sequences 01976 * Provide a factor that controls the size of the sequence that gets allocated. 01977 * This is typically useful in the parallel setting when a-priori, the number of ghost entities 01978 * and the memory required for them within the same sequence as the owned entities are unknown. 01979 * The default factor is 1.0 but this can be appropriately updated at runtime so that we do not 01980 * have broken sequences. 01981 */ 01982 virtual double get_sequence_multiplier() const = 0; 01983 01984 /** \brief Interface to control memory allocation for sequences 01985 * Provide a factor that controls the size of the sequence that gets allocated. 01986 * This is typically useful in the parallel setting when a-priori, the number of ghost entities 01987 * and the memory required for them within the same sequence as the owned entities are unknown. 01988 * The default factor is 1.0 but this can be appropriately updated at runtime so that we do not 01989 * have broken sequences. 01990 * 01991 * \param meshset User specified multiplier (should be greater than 1.0) 01992 */ 01993 virtual void set_sequence_multiplier( double factor ) = 0; 01994 01995 /**@}*/ 01996 }; 01997 01998 //! predicate for STL algorithms. Returns true if the entity handle is 01999 //! of the specified type. For example, to remove all the tris out of a list 02000 //! of 2D entities retrieved using get_adjacencies you could do 02001 //! std::remove_if(list.begin(), list.end(), type_equals(gMB, MBTRI)); 02002 class type_equals 02003 { 02004 // deprecation of unary_function 02005 typedef EntityHandle argument_type; 02006 typedef bool result_type; 02007 02008 public: 02009 //! interface object 02010 Interface* meshDB; 02011 02012 //! type corresponding to this predicate 02013 const EntityType test_type; 02014 02015 //! Constructor 02016 type_equals( Interface* mdb, const EntityType type ) : meshDB( mdb ), test_type( type ) {} 02017 02018 //! operator predicate 02019 bool operator()( EntityHandle handle ) const 02020 { 02021 return ( meshDB->type_from_handle( handle ) == test_type ); 02022 } 02023 }; 02024 02025 //! predicate for STL algorithms. Returns true if the entity handle is not 02026 //! of the specified type. For example, to remove all but the tris out of a list 02027 //! of 2D entities retrieved using get_adjacencies you could do 02028 //! std::remove_if(list.begin(), list.end(), type_not_equals(gMB, MBTRI)); 02029 class type_not_equals 02030 { 02031 // deprecation of unary_function 02032 typedef EntityHandle argument_type; 02033 typedef bool result_type; 02034 02035 public: 02036 //! interface object 02037 Interface* meshDB; 02038 02039 //! type corresponding to this predicate 02040 const EntityType test_type; 02041 02042 //! Constructor 02043 type_not_equals( Interface* mdb, const EntityType type ) : meshDB( mdb ), test_type( type ) {} 02044 02045 //! operator predicate 02046 bool operator()( EntityHandle handle ) const 02047 { 02048 return ( meshDB->type_from_handle( handle ) != test_type ); 02049 } 02050 }; 02051 02052 inline float Interface::api_version( std::string* version_string ) 02053 { 02054 if( NULL != version_string ) 02055 *version_string = std::string( "MOAB API version " ) + std::string( MOAB_API_VERSION_STRING ); 02056 return MOAB_API_VERSION; 02057 } 02058 02059 } // namespace moab 02060 02061 #endif // MB_INTERFACE_HPP