Mesh Oriented datABase
(version 5.4.1)
Array-based unstructured mesh datastructure
|
#include "mhdf.h"
#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include <sys/stat.h>
#include <H5Tpublic.h>
Go to the source code of this file.
Functions | |
static int | check_valid_file_ids (struct mhdf_FileDesc *desc) |
static int | check_file_contains_holes (const char *filename) |
static int | check_valid_connectivity (mhdf_FileHandle file, struct mhdf_FileDesc *desc) |
static int | check_valid_adjacencies (mhdf_FileHandle file, struct mhdf_FileDesc *desc) |
static int | check_valid_sets (mhdf_FileHandle file, struct mhdf_FileDesc *desc) |
static int | check_valid_tags (mhdf_FileHandle file, struct mhdf_FileDesc *desc) |
static const char * | desc_name (struct mhdf_FileDesc *desc, struct mhdf_EntDesc *grp) |
static int | id_contained (long file_id, const long *ranges, int num_range) |
static int | ids_contained (const long *ids, int num_ids, const long *ranges, int num_ranges) |
static int | ranges_contained (const long *id_ranges, int num_id_ranges, const long *ranges, int num_ranges) |
static int | string_contained (const char *str, const char *const *const list) |
static int | contains_duplicates (long *array, long n) |
static int | ranges_contain_duplicates (long *ranges, long nranges) |
static long * | all_id_ranges (struct mhdf_FileDesc *desc, int include_null, int *num_ranges_out) |
static long * | get_dim_ranges (struct mhdf_FileDesc *desc, int dim, int *num_ranges_out) |
static int | merge_ranges (long *ranges, int nranges) |
static int | check_valid_end_indices (const long *indices, long num_idx, int min_len, long start_id, long max_value, const char *typestr, const char *name) |
static int | check_valid_elem_conn (int idx, mhdf_FileHandle file, struct mhdf_FileDesc *desc, int conn_dim) |
static int | check_valid_poly_conn (int idx, mhdf_FileHandle file, struct mhdf_FileDesc *desc, int conn_dim) |
static int | check_valid_tag (int tag_idx, mhdf_FileHandle file, struct mhdf_FileDesc *desc) |
static int | check_valid_var_len_tag (int tag_idx, mhdf_FileHandle file, struct mhdf_FileDesc *desc) |
static int | check_valid_adj_list (long start_id, long count, const long *data, long data_len, const long *valid_ranges, long num_valid_ranges, const char *name) |
static int | check_valid_parents_children (long start_id, long count, hid_t meta_handle, hid_t data_handle, long data_len, int parents) |
static int | check_valid_set_contents (struct mhdf_FileDesc *desc, long start_id, long count, hid_t meta_handle, hid_t data_handle, long data_len) |
static int | lcomp (const void *p1, const void *p2) |
static int | dcomp (const void *p1, const void *p2) |
int | main (int argc, char *argv[]) |
Variables | |
int | verbose = 0 |
program-wide verbose output flag |
static long * all_id_ranges | ( | struct mhdf_FileDesc * | desc, |
int | include_null, | ||
int * | num_ranges_out | ||
) | [static] |
Definition at line 907 of file validate.c.
References mhdf_EntDesc::count, mhdf_ElemDesc::desc, mhdf_FileDesc::elems, merge_ranges(), mhdf_FileDesc::nodes, mhdf_FileDesc::num_elem_desc, mhdf_FileDesc::sets, and mhdf_EntDesc::start_id.
Referenced by check_valid_set_contents(), check_valid_tag(), and check_valid_var_len_tag().
{ int i, num_ranges = 0; struct mhdf_EntDesc* group; long* ranges = malloc( 2 * sizeof( long ) * ( desc->num_elem_desc + 2 + !!include_null ) ); if( include_null ) { num_ranges = 1; ranges[0] = 0; ranges[1] = 1; } for( i = -1; i <= desc->num_elem_desc; ++i ) { if( i == -1 ) group = &desc->nodes; else if( i == desc->num_elem_desc ) group = &desc->sets; else group = &desc->elems[i].desc; if( num_ranges && ranges[2 * num_ranges - 2] + ranges[2 * num_ranges - 1] == group->start_id ) { ranges[2 * num_ranges - 1] += group->count; } else { ranges[2 * num_ranges] = group->start_id; ranges[2 * num_ranges + 1] = group->count; ++num_ranges; } } *num_ranges_out = merge_ranges( ranges, num_ranges ); return ranges; }
int check_file_contains_holes | ( | const char * | filename | ) | [static] |
Definition at line 231 of file validate.c.
Referenced by main().
{ #ifndef _WIN32 const int blocksize = 512; #endif int errorcode; struct stat buf; errorcode = stat( filename, &buf ); if( errorcode ) { perror( filename ); return 1; } #ifndef _WIN32 /*Does not have st_blocks*/ if( buf.st_size / blocksize > buf.st_blocks + 1 ) { printf( "File \"%s\" contains holes. This indicates that portions of the file were never " "written.\n", filename ); return 1; } #endif return 0; }
static int check_valid_adj_list | ( | long | start_id, |
long | count, | ||
const long * | data, | ||
long | data_len, | ||
const long * | valid_ranges, | ||
long | num_valid_ranges, | ||
const char * | name | ||
) | [static] |
Definition at line 637 of file validate.c.
References ids_contained(), and verbose.
Referenced by check_valid_adjacencies().
{ long i, n, id, invalid_id = 0, invalid_vals = 0; const long* iter = data; const long* const end = data + data_len; int result = 0; for( i = 0; iter != end; ++i ) { id = *iter; ++iter; if( iter == end ) { printf( "Entry %ld in %s adjacency data (ID %ld) is truncated by the end of the " "adjacency list.\n", i, name, id ); result = 1; break; } if( id < start_id || ( id - start_id ) >= count ) { if( verbose ) printf( "Entry %ld in %s adjacency data has ID %ld outside of group range [%ld,%ld].\n", i, name, id, start_id, start_id + count - 1 ); ++invalid_id; } n = *iter; ++iter; if( n < 1 ) { printf( "Entry %ld in %s adjacency data (ID %ld) has %ld adjacency entries.\n", i, name, id, n ); result = 1; if( n < 0 ) break; /* data is corrupt. don't proceed further */ } if( iter + n > end ) { printf( "Entry %ld in %s adjacency data (ID %ld) is truncated by the end of the " "adjacency list.\n", i, name, id ); result = 1; break; } if( !ids_contained( iter, n, valid_ranges, num_valid_ranges ) ) { if( verbose ) printf( "Entry %ld in %s adjacency data (ID %ld) has invalid IDs in its adjacency " "list.\n", i, name, id ); ++invalid_vals; } iter += n; } if( invalid_id ) { printf( "%ld entries in %s adjacency data were for entities not in %s\n", invalid_id, name, name ); result = 1; } if( invalid_vals ) { printf( "%ld entries in %s adjacency data contained invalid adjacent entity ids\n", invalid_id, name ); result = 1; } return result; }
int check_valid_adjacencies | ( | mhdf_FileHandle | file, |
struct mhdf_FileDesc * | desc | ||
) | [static] |
Definition at line 584 of file validate.c.
References buffer, check_valid_adj_list(), mhdf_EntDesc::count, mhdf_ElemDesc::desc, mhdf_FileDesc::elems, mhdf_ElemDesc::handle, mhdf_ElemDesc::have_adj, mhdf_closeData(), mhdf_isError(), mhdf_message(), mhdf_openAdjacency(), mhdf_readAdjacency(), mhdf_FileDesc::num_elem_desc, and mhdf_EntDesc::start_id.
Referenced by main().
{ const int num_ranges = desc->num_elem_desc; long *ranges, *buffer; int i; int invalid = 0; long count; hid_t handle; mhdf_Status status; /* Build list of ID ranges for all elements. Consider any element ID to be a valid * thing to be adjacent to. So we disallow adjacency to nodes, sets, or undefined IDs */ ranges = malloc( sizeof( long ) * 2 * num_ranges ); for( i = 0; i < num_ranges; ++i ) { ranges[2 * i] = desc->elems[i].desc.start_id; ranges[2 * i + 1] = desc->elems[i].desc.count; } for( i = 0; i < num_ranges; ++i ) { if( !desc->elems[i].have_adj ) continue; handle = mhdf_openAdjacency( file, desc->elems[i].handle, &count, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error openening adjacency list for %s: %s\n", desc->elems[i].handle, mhdf_message( &status ) ); free( ranges ); return 1; } buffer = malloc( sizeof( long ) * count ); mhdf_readAdjacency( handle, 0, count, H5T_NATIVE_LONG, buffer, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading adjacency list for %s: %s\n", desc->elems[i].handle, mhdf_message( &status ) ); free( ranges ); mhdf_closeData( file, handle, &status ); return 1; } mhdf_closeData( file, handle, &status ); invalid += check_valid_adj_list( desc->elems[i].desc.start_id, desc->elems[i].desc.count, buffer, count, ranges, num_ranges, desc->elems[i].handle ); free( buffer ); } free( ranges ); return invalid; }
int check_valid_connectivity | ( | mhdf_FileHandle | file, |
struct mhdf_FileDesc * | desc | ||
) | [static] |
Definition at line 259 of file validate.c.
References check_valid_elem_conn(), check_valid_poly_conn(), mhdf_ElemDesc::desc, dim, mhdf_FileDesc::elems, mhdf_POLYHEDRON_TYPE_NAME, mhdf_FileDesc::num_elem_desc, mhdf_ElemDesc::type, and mhdf_EntDesc::vals_per_ent.
Referenced by main().
{ int idx, dim, result = 0; for( idx = 0; idx < desc->num_elem_desc; ++idx ) { if( !strcmp( desc->elems[idx].type, mhdf_POLYHEDRON_TYPE_NAME ) ) dim = 2; else dim = 0; if( desc->elems[idx].desc.vals_per_ent == -1 ) result += check_valid_poly_conn( idx, file, desc, dim ); else result += check_valid_elem_conn( idx, file, desc, dim ); } return result; }
int check_valid_elem_conn | ( | int | idx, |
mhdf_FileHandle | file, | ||
struct mhdf_FileDesc * | desc, | ||
int | conn_dim | ||
) | [static] |
Definition at line 379 of file validate.c.
References buffer, mhdf_EntDesc::count, mhdf_ElemDesc::desc, mhdf_FileDesc::elems, get_dim_ranges(), mhdf_ElemDesc::handle, ids_contained(), mhdf_closeData(), mhdf_isError(), mhdf_message(), mhdf_openConnectivitySimple(), mhdf_readConnectivity(), mhdf_EntDesc::start_id, mhdf_EntDesc::vals_per_ent, and verbose.
Referenced by check_valid_connectivity().
{ long *ranges, *buffer, *iter; int num_ranges; long i, invalid = 0; hid_t handle; mhdf_Status status; const long count = desc->elems[idx].desc.count; const long len = desc->elems[idx].desc.vals_per_ent; ranges = get_dim_ranges( desc, conn_dim, &num_ranges ); handle = mhdf_openConnectivitySimple( file, desc->elems[idx].handle, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening connectivity for %s: %s\n", desc->elems[idx].handle, mhdf_message( &status ) ); free( ranges ); return 1; } buffer = malloc( sizeof( long ) * count * len ); mhdf_readConnectivity( handle, 0, count, H5T_NATIVE_LONG, buffer, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading connectivity for %s: %s\n", desc->elems[idx].handle, mhdf_message( &status ) ); free( ranges ); free( buffer ); mhdf_closeData( file, handle, &status ); return 1; } mhdf_closeData( file, handle, &status ); iter = buffer; for( i = 0; i < count; ++i, iter += len ) { if( !ids_contained( iter, len, ranges, num_ranges ) ) { if( verbose ) printf( "Invalid connectivity for element %ld (ID %ld) in %s\n", i, i + desc->elems[idx].desc.start_id, desc->elems[idx].handle ); ++invalid; } } free( buffer ); free( ranges ); if( invalid ) { printf( "%ld elements with invalid connectivity in %s\n", invalid, desc->elems[idx].handle ); return 1; } return 0; }
static int check_valid_end_indices | ( | const long * | indices, |
long | num_idx, | ||
int | min_len, | ||
long | start_id, | ||
long | max_value, | ||
const char * | typestr, | ||
const char * | name | ||
) | [static] |
Definition at line 434 of file validate.c.
References verbose.
Referenced by check_valid_parents_children(), check_valid_poly_conn(), check_valid_set_contents(), and check_valid_var_len_tag().
{ long i, invalid = 0, prev = -1; if( num_idx == 0 ) { printf( "WARNING: Empty index list for %s %s\n", name, typestr ); return 0; } for( i = 0; i < num_idx; ++i ) { if( indices[i] < prev ) { if( verbose ) { if( start_id > 0 ) printf( "Invalid end index %ld for %s %ld (ID %ld). Prev index is %ld\n", indices[i], name, i, i + start_id, prev ); else printf( "Invalid end index %ld for entry %ld in %s %s. Prev index is %ld\n", indices[i], i, name, typestr, prev ); } ++invalid; } else if( indices[i] - prev < min_len ) { if( verbose ) { if( start_id > 0 ) printf( "%s %ld (ID %ld) has only %ld values\n", name, i, start_id, indices[i] - prev ); else printf( "Entry %ld in %s %s has only %ld values\n", i, name, typestr, indices[i] - prev ); } ++invalid; } else if( indices[i] >= max_value ) { if( verbose ) { if( start_id > 0 ) printf( "%s %ld (ID %ld) end index exceeds upper bound of %ld\n", name, i, start_id, max_value ); else printf( "Entry %ld in %s %s end index exceeds uppper bound of %ld\n", i, name, typestr, max_value ); } ++invalid; } prev = indices[i]; } if( invalid ) { printf( "%ld invalid end indices for %s %s\n", invalid, typestr, name ); } return invalid; }
int check_valid_file_ids | ( | struct mhdf_FileDesc * | desc | ) | [static] |
Definition at line 195 of file validate.c.
References mhdf_EntDesc::count, dcomp(), mhdf_ElemDesc::desc, desc_name(), mhdf_FileDesc::elems, mhdf_FileDesc::nodes, mhdf_FileDesc::num_elem_desc, mhdf_FileDesc::sets, and mhdf_EntDesc::start_id.
Referenced by main().
{ const int ngrp = 2 + desc->num_elem_desc; int i, err = 0; struct mhdf_EntDesc** sorted = malloc( ngrp * sizeof( struct mhdf_EntDesc* ) ); for( i = 0; i < desc->num_elem_desc; ++i ) sorted[i] = &desc->elems[i].desc; sorted[i++] = &desc->nodes; sorted[i] = &desc->sets; qsort( sorted, ngrp, sizeof( struct mhdf_EntDesc* ), &dcomp ); for( i = 0; i < ngrp; ++i ) { if( sorted[i]->count < 0 ) { printf( "Group \"%s\" has negative count!\n", desc_name( desc, sorted[i] ) ); ++err; } if( sorted[i]->count && sorted[i]->start_id == 0 ) { printf( "Group \"%s\" contains NULL ID!\n", desc_name( desc, sorted[i] ) ); ++err; } if( i > 0 && sorted[i - 1]->start_id + sorted[i - 1]->count > sorted[i]->start_id ) { printf( "Conflicting group IDs for \"%s\" [%ld,%ld] and \"%s\" [%ld,%ld]\n", desc_name( desc, sorted[i - 1] ), sorted[i - 1]->start_id, sorted[i - 1]->start_id + sorted[i - 1]->count - 1, desc_name( desc, sorted[i] ), sorted[i]->start_id, sorted[i]->start_id + sorted[i]->count - 1 ); ++err; } } free( sorted ); return err; }
static int check_valid_parents_children | ( | long | start_id, |
long | count, | ||
hid_t | meta_handle, | ||
hid_t | data_handle, | ||
long | data_len, | ||
int | parents | ||
) | [static] |
Definition at line 796 of file validate.c.
References check_valid_end_indices(), contains_duplicates(), ids_contained(), mhdf_isError(), mhdf_message(), mhdf_readSetChildEndIndices(), mhdf_readSetParentEndIndices(), mhdf_readSetParentsChildren(), and verbose.
Referenced by check_valid_sets().
{ mhdf_Status status; long *indices, *contents; const char parstr[] = "Parent"; const char cldstr[] = "Child"; const char* name = parents ? parstr : cldstr; long i, prev, start, n; long invalid = 0, invalid_dup = 0; long range[2]; int result = 0; range[0] = start_id; range[1] = count; indices = malloc( sizeof( long ) * count ); if( parents ) mhdf_readSetParentEndIndices( meta_handle, 0, count, H5T_NATIVE_LONG, indices, &status ); else mhdf_readSetChildEndIndices( meta_handle, 0, count, H5T_NATIVE_LONG, indices, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading set %s end indices: %s\n", name, mhdf_message( &status ) ); free( indices ); return 1; } if( check_valid_end_indices( indices, count, 0, start_id, data_len, "Set", name ) ) { free( indices ); return 1; } contents = malloc( sizeof( long ) * data_len ); mhdf_readSetParentsChildren( data_handle, 0, data_len, H5T_NATIVE_LONG, contents, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading set %s IDs: %s\n", name, mhdf_message( &status ) ); free( indices ); free( contents ); return 1; } prev = -1; for( i = 0; i < count; ++i ) { start = prev + 1; n = indices[i] - prev; prev = indices[i]; if( !ids_contained( contents + start, n, range, 1 ) ) { if( verbose ) printf( "Set %ld (ID %ld) has invalid %s IDs.\n", i, start_id + i, name ); ++invalid; } else if( contains_duplicates( contents + start, n ) ) { if( verbose ) printf( "Set %ld (ID %ld) %s list contains duplicate IDs.\n", i, start_id + i, name ); ++invalid_dup; } } free( indices ); free( contents ); if( invalid ) { printf( "%ld sets had invalid %s lists.\n", invalid, name ); result = 1; } if( invalid_dup ) { printf( "%ld sets had duplicate handles in %s lists.\n", invalid_dup, name ); result = 1; } return result; }
int check_valid_poly_conn | ( | int | idx, |
mhdf_FileHandle | file, | ||
struct mhdf_FileDesc * | desc, | ||
int | conn_dim | ||
) | [static] |
Definition at line 498 of file validate.c.
References buffer, check_valid_end_indices(), mhdf_FileDesc::elems, get_dim_ranges(), mhdf_ElemDesc::handle, ids_contained(), mhdf_closeData(), mhdf_isError(), mhdf_message(), mhdf_openPolyConnectivity(), mhdf_POLYHEDRON_TYPE_NAME, mhdf_readPolyConnIDs(), mhdf_readPolyConnIndices(), mhdf_ElemDesc::type, and verbose.
Referenced by check_valid_connectivity().
{ long *ranges, *buffer, *indices, *iter; int num_ranges; long i, invalid, num_poly, num_conn, first_id, prev, len; hid_t handles[2]; mhdf_Status status; int min_conn_len; if( !strcmp( mhdf_POLYHEDRON_TYPE_NAME, desc->elems[idx].type ) ) min_conn_len = 4; else min_conn_len = 3; mhdf_openPolyConnectivity( file, desc->elems[idx].handle, &num_poly, &num_conn, &first_id, handles, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening connectivity for %s: %s\n", desc->elems[idx].handle, mhdf_message( &status ) ); return 1; } indices = malloc( sizeof( long ) * num_poly ); mhdf_readPolyConnIndices( handles[0], 0, num_poly, H5T_NATIVE_LONG, indices, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading poly indices for %s: %s\n", desc->elems[idx].handle, mhdf_message( &status ) ); free( indices ); mhdf_closeData( file, handles[0], &status ); mhdf_closeData( file, handles[1], &status ); return 1; } mhdf_closeData( file, handles[0], &status ); invalid = check_valid_end_indices( indices, num_poly, min_conn_len, first_id, num_conn, "Connectivity", desc->elems[idx].handle ); if( invalid ) { free( indices ); mhdf_closeData( file, handles[1], &status ); return 1; } ranges = get_dim_ranges( desc, conn_dim, &num_ranges ); buffer = malloc( sizeof( long ) * num_conn ); mhdf_readPolyConnIDs( handles[1], 0, num_conn, H5T_NATIVE_LONG, buffer, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading connectivity for %s: %s\n", desc->elems[idx].handle, mhdf_message( &status ) ); free( ranges ); free( indices ); free( buffer ); mhdf_closeData( file, handles[1], &status ); return 1; } mhdf_closeData( file, handles[1], &status ); prev = -1; iter = buffer; for( i = 0; i < num_poly; ++i ) { len = indices[i] - prev; prev = indices[i]; if( !ids_contained( iter, len, ranges, num_ranges ) ) { if( verbose ) printf( "Invalid connectivity for element %ld (ID %ld) in %s\n", i, i + first_id, desc->elems[idx].handle ); ++invalid; } iter += len; } free( indices ); free( buffer ); free( ranges ); if( invalid ) { printf( "%ld elements with invalid connectivity in %s\n", invalid, desc->elems[idx].handle ); return 1; } return 0; }
static int check_valid_set_contents | ( | struct mhdf_FileDesc * | desc, |
long | start_id, | ||
long | count, | ||
hid_t | meta_handle, | ||
hid_t | data_handle, | ||
long | data_len | ||
) | [static] |
Definition at line 943 of file validate.c.
References all_id_ranges(), check_valid_end_indices(), contains_duplicates(), mhdf_EntDesc::count, ids_contained(), mhdf_isError(), mhdf_message(), mhdf_readSetContentEndIndices(), mhdf_readSetData(), mhdf_readSetFlags(), mhdf_SET_ORDER_BIT, mhdf_SET_RANGE_BIT, ranges_contain_duplicates(), ranges_contained(), and verbose.
Referenced by check_valid_sets().
{ mhdf_Status status; long *indices, *contents; short* flags; long i, prev, start, n; long invalid_len = 0, invalid_handle = 0, invalid_dup = 0; long* ranges; int num_ranges; int tmpresult; indices = malloc( sizeof( long ) * count ); mhdf_readSetContentEndIndices( meta_handle, 0, count, H5T_NATIVE_LONG, indices, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading set content end indices: %s\n", mhdf_message( &status ) ); free( indices ); return 1; } if( check_valid_end_indices( indices, count, 0, start_id, data_len, "Set", "Content" ) ) { free( indices ); return 1; } ranges = all_id_ranges( desc, 0, &num_ranges ); flags = malloc( sizeof( short ) * count ); mhdf_readSetFlags( meta_handle, 0, count, H5T_NATIVE_SHORT, flags, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading set flags: %s\n", mhdf_message( &status ) ); free( indices ); free( flags ); free( ranges ); return 1; } contents = malloc( sizeof( long ) * data_len ); mhdf_readSetData( data_handle, 0, data_len, H5T_NATIVE_LONG, contents, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading set content IDs: %s\n", mhdf_message( &status ) ); free( indices ); free( contents ); free( flags ); free( ranges ); return 1; } prev = -1; for( i = 0; i < count; ++i ) { start = prev + 1; n = indices[i] - prev; prev = indices[i]; if( flags[i] & mhdf_SET_RANGE_BIT ) { if( n % 2 ) { if( verbose ) printf( "Set %ld (ID %ld) is marked as range-compressed but has odd number of " "content values.\n", i + 1, start_id + i ); ++invalid_len; continue; } tmpresult = ranges_contained( contents + start, n / 2, ranges, num_ranges ); } else { tmpresult = ids_contained( contents + start, n, ranges, num_ranges ); } if( !tmpresult ) { if( verbose ) printf( "Set %ld (ID %ld) has invalid content IDs.\n", i + 1, start_id + i ); ++invalid_handle; continue; } if( flags[i] & mhdf_SET_ORDER_BIT ) continue; if( flags[i] & mhdf_SET_RANGE_BIT ) tmpresult = ranges_contain_duplicates( contents + start, n / 2 ); else tmpresult = contains_duplicates( contents + start, n ); if( tmpresult ) { if( verbose ) printf( "Set %ld (ID %ld) is not ordered but contains duplicate handles.\n", i + 1, start_id + i ); ++invalid_dup; } } free( indices ); free( contents ); free( flags ); free( ranges ); tmpresult = 0; if( invalid_len ) { printf( "%ld ranged sets had invalid (odd) content list lengths.\n", invalid_len ); tmpresult = 1; } if( invalid_handle ) { printf( "%ld sets had invalid IDs in their content lists.\n", invalid_handle ); tmpresult = 1; } if( invalid_dup ) { printf( "%ld unordered sets had duplicate IDs in their content lists.\n", invalid_dup ); tmpresult = 1; } return tmpresult; }
int check_valid_sets | ( | mhdf_FileHandle | file, |
struct mhdf_FileDesc * | desc | ||
) | [static] |
Definition at line 714 of file validate.c.
References check_valid_parents_children(), check_valid_set_contents(), mhdf_EntDesc::count, mhdf_FileDesc::have_set_children, mhdf_FileDesc::have_set_contents, mhdf_FileDesc::have_set_parents, mhdf_closeData(), mhdf_isError(), mhdf_message(), mhdf_openSetChildren(), mhdf_openSetData(), mhdf_openSetMeta(), mhdf_openSetParents(), and mhdf_FileDesc::sets.
Referenced by main().
{ long count, start_id, data_len; mhdf_Status status; hid_t meta, handle; int result = 0; if( desc->sets.count == 0 ) return 0; meta = mhdf_openSetMeta( file, &count, &start_id, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening set description table: %s\n", mhdf_message( &status ) ); return 1; } if( desc->have_set_contents ) { handle = mhdf_openSetData( file, &data_len, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening set contents table: %s\n", mhdf_message( &status ) ); } else { result += check_valid_set_contents( desc, start_id, count, meta, handle, data_len ); mhdf_closeData( file, handle, &status ); } } if( desc->have_set_children ) { handle = mhdf_openSetChildren( file, &data_len, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening set child table: %s\n", mhdf_message( &status ) ); mhdf_closeData( file, meta, &status ); } else { result += check_valid_parents_children( start_id, count, meta, handle, data_len, 0 ); mhdf_closeData( file, handle, &status ); } } if( desc->have_set_parents ) { handle = mhdf_openSetParents( file, &data_len, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening set child table: %s\n", mhdf_message( &status ) ); mhdf_closeData( file, meta, &status ); } else { result += check_valid_parents_children( start_id, count, meta, handle, data_len, 1 ); mhdf_closeData( file, handle, &status ); } } mhdf_closeData( file, meta, &status ); return result; }
static int check_valid_tag | ( | int | tag_idx, |
mhdf_FileHandle | file, | ||
struct mhdf_FileDesc * | desc | ||
) | [static] |
Definition at line 1082 of file validate.c.
References all_id_ranges(), contains_duplicates(), mhdf_EntDesc::count, mhdf_TagDesc::default_value, mhdf_TagDesc::dense_elem_indices, mhdf_ElemDesc::desc, mhdf_FileDesc::elems, mhdf_TagDesc::global_value, mhdf_ElemDesc::handle, mhdf_TagDesc::have_sparse, ids_contained(), mhdf_closeData(), mhdf_ENTITY_ID, mhdf_isError(), mhdf_message(), mhdf_node_type_handle(), mhdf_openDenseTagData(), mhdf_openSparseTagData(), mhdf_readSparseTagEntities(), mhdf_readTagValues(), mhdf_set_type_handle(), mhdf_TagDesc::name, mhdf_FileDesc::nodes, mhdf_TagDesc::num_dense_indices, mhdf_FileDesc::sets, size, mhdf_TagDesc::size, mhdf_EntDesc::start_id, mhdf_FileDesc::tags, and mhdf_TagDesc::type.
Referenced by check_valid_tags().
{ long *ids = 0, count, junk; long* ranges; int nranges; hid_t handles[3]; mhdf_Status status; const struct mhdf_TagDesc* tag = &( desc->tags[tag_idx] ); int i, result = 0; long srange[2] = { 0, 0 }; const char* name; struct mhdf_EntDesc* group; hid_t h5type; hsize_t size; if( tag->have_sparse ) { mhdf_openSparseTagData( file, tag->name, &count, &junk, handles, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening sparse data for tag \"%s\": %s\n", tag->name, mhdf_message( &status ) ); return 1; } ids = malloc( sizeof( long ) * count ); mhdf_readSparseTagEntities( handles[0], 0, count, H5T_NATIVE_LONG, ids, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading sparse entities for tag \"%s\": %s\n", tag->name, mhdf_message( &status ) ); mhdf_closeData( file, handles[0], &status ); mhdf_closeData( file, handles[1], &status ); free( ids ); return 1; } mhdf_closeData( file, handles[0], &status ); ranges = all_id_ranges( desc, 0, &nranges ); if( !ids_contained( ids, count, ranges, nranges ) ) { ++result; printf( "Sparse data for tag \"%s\" has values for invalid IDs\n", tag->name ); } else if( contains_duplicates( ids, count ) ) { ++result; printf( "Sparse data for tag \"%s\" has duplicate values for one or more entities\n", tag->name ); } free( ranges ); for( i = 0; i < tag->num_dense_indices; ++i ) { if( tag->dense_elem_indices[i] == -2 ) { name = mhdf_set_type_handle(); group = &desc->sets; } else if( tag->dense_elem_indices[i] == -1 ) { name = mhdf_node_type_handle(); group = &desc->nodes; } else { name = desc->elems[tag->dense_elem_indices[i]].handle; group = &desc->elems[tag->dense_elem_indices[i]].desc; } srange[0] = group->start_id; srange[1] = group->count; if( ids_contained( ids, count, srange, 2 ) ) { ++result; printf( "Tag \"%s\" has both sparse values and dense values for one or more " "entities in \"%s\"\n", tag->name, name ); } } free( ids ); } if( tag->type != mhdf_ENTITY_ID ) { if( tag->have_sparse ) mhdf_closeData( file, handles[1], &status ); return result; } ranges = all_id_ranges( desc, 1, &nranges ); if( tag->default_value && !ids_contained( tag->default_value, tag->size, ranges, nranges ) ) { ++result; printf( "Handle tag \"%s\" has invalid ID(s) in its default value.\n", tag->name ); } if( tag->global_value && !ids_contained( tag->global_value, tag->size, ranges, nranges ) ) { ++result; printf( "Handle tag \"%s\" has invalid ID(s) in its global/mesh value.\n", tag->name ); } h5type = H5T_NATIVE_LONG; if( tag->size > 1 ) { size = tag->size; #if defined( H5Tarray_create_vers ) && H5Tarray_create_vers > 1 h5type = H5Tarray_create( H5T_NATIVE_LONG, 1, &size ); #else h5type = H5Tarray_create( H5T_NATIVE_LONG, 1, &size, NULL ); #endif } if( tag->have_sparse ) { ids = malloc( tag->size * count * sizeof( long ) ); mhdf_readTagValues( handles[1], 0, count, h5type, ids, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading sparse values for handle tag \"%s\": %s\n", tag->name, mhdf_message( &status ) ); mhdf_closeData( file, handles[1], &status ); free( ids ); free( ranges ); if( tag->size > 1 ) H5Tclose( h5type ); return 1; } mhdf_closeData( file, handles[1], &status ); if( !ids_contained( ids, tag->size * count, ranges, nranges ) ) { ++result; printf( "Sparse data for one or more entities with handle tag \"%s\" has invalid ID(s).\n", tag->name ); } free( ids ); } for( i = 0; i < tag->num_dense_indices; ++i ) { if( tag->dense_elem_indices[i] == -2 ) { name = mhdf_set_type_handle(); /*group = &desc->sets;*/ } else if( tag->dense_elem_indices[i] == -1 ) { name = mhdf_node_type_handle(); /*group = &desc->nodes;*/ } else { name = desc->elems[tag->dense_elem_indices[i]].handle; /*group = &desc->elems[ tag->dense_elem_indices[i] ].desc;*/ } handles[0] = mhdf_openDenseTagData( file, tag->name, name, &count, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal dense values for handle tag \"%s\" on \"%s\": %s\n", tag->name, name, mhdf_message( &status ) ); ++result; continue; } ids = malloc( tag->size * count * sizeof( long ) ); mhdf_readTagValues( handles[0], 0, count, h5type, ids, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading dense values for handle tag \"%s\" on \"%s\": %s\n", tag->name, name, mhdf_message( &status ) ); mhdf_closeData( file, handles[0], &status ); free( ids ); ++result; continue; } mhdf_closeData( file, handles[1], &status ); if( !ids_contained( ids, count, ranges, nranges ) ) { ++result; printf( "Dense data on \"%s\" for handle tag \"%s\" has invalid ID(s) for one or more " "entities.\n", name, tag->name ); } free( ids ); } if( tag->size > 1 ) H5Tclose( h5type ); return result; }
int check_valid_tags | ( | mhdf_FileHandle | file, |
struct mhdf_FileDesc * | desc | ||
) | [static] |
Definition at line 1069 of file validate.c.
References check_valid_tag(), check_valid_var_len_tag(), mhdf_FileDesc::num_tag_desc, mhdf_TagDesc::size, and mhdf_FileDesc::tags.
Referenced by main().
{ int i, result = 0; for( i = 0; i < desc->num_tag_desc; ++i ) { if( desc->tags[i].size < 0 ) result += check_valid_var_len_tag( i, file, desc ); else result += check_valid_tag( i, file, desc ); } return result; }
static int check_valid_var_len_tag | ( | int | tag_idx, |
mhdf_FileHandle | file, | ||
struct mhdf_FileDesc * | desc | ||
) | [static] |
Definition at line 1273 of file validate.c.
References all_id_ranges(), check_valid_end_indices(), contains_duplicates(), mhdf_EntDesc::count, mhdf_TagDesc::default_value, mhdf_TagDesc::default_value_size, mhdf_TagDesc::global_value, mhdf_TagDesc::global_value_size, mhdf_TagDesc::have_sparse, ids_contained(), mhdf_closeData(), mhdf_ENTITY_ID, mhdf_isError(), mhdf_message(), mhdf_openSparseTagData(), mhdf_readSparseTagEntities(), mhdf_readSparseTagIndices(), mhdf_readTagValues(), mhdf_TagDesc::name, mhdf_TagDesc::num_dense_indices, mhdf_TagDesc::size, mhdf_FileDesc::tags, and mhdf_TagDesc::type.
Referenced by check_valid_tags().
{ long *ids = 0, count, num_val; long* ranges; int nranges; hid_t handles[3]; mhdf_Status status; const struct mhdf_TagDesc* tag = &( desc->tags[tag_idx] ); int result = 0; if( tag->num_dense_indices != 0 ) { printf( "Dense data for tag \"%s\" not allowed for variable-length tags\n", tag->name ); ++result; } if( tag->have_sparse ) { mhdf_openSparseTagData( file, tag->name, &count, &num_val, handles, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error opening sparse data for tag \"%s\": %s\n", tag->name, mhdf_message( &status ) ); return 1; } ids = malloc( sizeof( long ) * count ); mhdf_readSparseTagEntities( handles[0], 0, count, H5T_NATIVE_LONG, ids, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading sparse entities for tag \"%s\": %s\n", tag->name, mhdf_message( &status ) ); mhdf_closeData( file, handles[0], &status ); mhdf_closeData( file, handles[1], &status ); mhdf_closeData( file, handles[2], &status ); free( ids ); return 1; } mhdf_closeData( file, handles[0], &status ); ranges = all_id_ranges( desc, 0, &nranges ); if( !ids_contained( ids, count, ranges, nranges ) ) { ++result; printf( "Sparse data for tag \"%s\" has values for invalid IDs\n", tag->name ); } else if( contains_duplicates( ids, count ) ) { ++result; printf( "Sparse data for tag \"%s\" has duplicate values for one or more entities\n", tag->name ); } free( ranges ); mhdf_readSparseTagIndices( handles[2], 0, count, H5T_NATIVE_LONG, ids, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading indices for variable length tag \"%s\": %s\n", tag->name, mhdf_message( &status ) ); mhdf_closeData( file, handles[1], &status ); mhdf_closeData( file, handles[2], &status ); free( ids ); return 1; } mhdf_closeData( file, handles[2], &status ); if( check_valid_end_indices( ids, count, 1, 0, num_val, "Variable-length tag", tag->name ) ) ++result; free( ids ); } if( tag->type != mhdf_ENTITY_ID ) { if( tag->have_sparse ) mhdf_closeData( file, handles[1], &status ); return result; } ranges = all_id_ranges( desc, 1, &nranges ); if( tag->default_value && !ids_contained( tag->default_value, tag->default_value_size, ranges, nranges ) ) { ++result; printf( "Handle tag \"%s\" has invalid ID(s) in its default value.\n", tag->name ); } if( tag->global_value && !ids_contained( tag->global_value, tag->global_value_size, ranges, nranges ) ) { ++result; printf( "Handle tag \"%s\" has invalid ID(s) in its global/mesh value.\n", tag->name ); } if( tag->have_sparse ) { ids = malloc( num_val * sizeof( long ) ); mhdf_readTagValues( handles[1], 0, num_val, H5T_NATIVE_LONG, ids, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "Internal error reading values for variable-length handle tag \"%s\": %s\n", tag->name, mhdf_message( &status ) ); mhdf_closeData( file, handles[1], &status ); free( ids ); free( ranges ); return 1; } mhdf_closeData( file, handles[1], &status ); if( !ids_contained( ids, tag->size * count, ranges, nranges ) ) { ++result; printf( "Data for one or more entities with variable-length handle tag \"%s\" has " "invalid ID(s).\n", tag->name ); } free( ids ); } return result; }
static int contains_duplicates | ( | long * | array, |
long | n | ||
) | [static] |
Definition at line 778 of file validate.c.
References lcomp().
Referenced by check_valid_parents_children(), check_valid_set_contents(), check_valid_tag(), and check_valid_var_len_tag().
{ long i; qsort( array, n, sizeof( long ), &lcomp ); for( i = 1; i < n; ++i ) if( array[i - 1] == array[i] ) return 1; return 0; }
static int dcomp | ( | const void * | p1, |
const void * | p2 | ||
) | [static] |
Definition at line 127 of file validate.c.
References lcomp(), and mhdf_EntDesc::start_id.
Referenced by check_valid_file_ids().
{ const struct mhdf_EntDesc* d1 = *(const struct mhdf_EntDesc**)( p1 ); const struct mhdf_EntDesc* d2 = *(const struct mhdf_EntDesc**)( p2 ); return lcomp( &d1->start_id, &d2->start_id ); }
static const char * desc_name | ( | struct mhdf_FileDesc * | desc, |
struct mhdf_EntDesc * | grp | ||
) | [static] |
Definition at line 182 of file validate.c.
References mhdf_ElemDesc::desc, mhdf_ElemDesc::handle, mhdf_FileDesc::nodes, and mhdf_FileDesc::sets.
Referenced by check_valid_file_ids().
{ struct mhdf_ElemDesc junk, *elem; const size_t diff = (char*)&junk.desc - (char*)&junk; static const char nodes[] = "Vertices"; static const char sets[] = "Sets"; if( grp == &desc->nodes ) return nodes; if( grp == &desc->sets ) return sets; elem = (struct mhdf_ElemDesc*)( (char*)grp - diff ); return elem->handle; }
static long * get_dim_ranges | ( | struct mhdf_FileDesc * | desc, |
int | dim, | ||
int * | num_ranges_out | ||
) | [static] |
Definition at line 329 of file validate.c.
References mhdf_EntDesc::count, mhdf_ElemDesc::desc, mhdf_FileDesc::elems, mdhf_HEX_TYPE_NAME, mdhf_KNIFE_TYPE_NAME, merge_ranges(), mhdf_EDGE_TYPE_NAME, mhdf_POLYGON_TYPE_NAME, mhdf_POLYHEDRON_TYPE_NAME, mhdf_PRISM_TYPE_NAME, mhdf_PYRAMID_TYPE_NAME, mhdf_QUAD_TYPE_NAME, mhdf_SEPTAHEDRON_TYPE_NAME, mhdf_TET_TYPE_NAME, mhdf_TRI_TYPE_NAME, mhdf_FileDesc::nodes, mhdf_FileDesc::num_elem_desc, mhdf_EntDesc::start_id, string_contained(), and mhdf_ElemDesc::type.
Referenced by check_valid_elem_conn(), and check_valid_poly_conn().
{ long* ranges = 0; int i, j; const char* const types1D[] = { mhdf_EDGE_TYPE_NAME, 0 }; const char* const types2D[] = { mhdf_TRI_TYPE_NAME, mhdf_QUAD_TYPE_NAME, mhdf_POLYGON_TYPE_NAME, 0 }; const char* const types3D[] = { mhdf_TET_TYPE_NAME, mhdf_PYRAMID_TYPE_NAME, mhdf_PRISM_TYPE_NAME, mdhf_KNIFE_TYPE_NAME, mdhf_HEX_TYPE_NAME, mhdf_POLYHEDRON_TYPE_NAME, mhdf_SEPTAHEDRON_TYPE_NAME, 0 }; char const* const* typelist; switch( dim ) { case 0: *num_ranges_out = 1; ranges = malloc( 2 * sizeof( long ) ); ranges[0] = desc->nodes.start_id; ranges[1] = desc->nodes.count; return ranges; case 1: typelist = types1D; break; case 2: typelist = types2D; break; case 3: typelist = types3D; break; default: fprintf( stderr, "Internal error at %s:%d: request for entities of dimesion %d\n", __FILE__, __LINE__, dim ); abort(); } *num_ranges_out = 0; for( i = 0; i < desc->num_elem_desc; ++i ) if( string_contained( desc->elems[i].type, typelist ) ) ++*num_ranges_out; ranges = malloc( *num_ranges_out * 2 * sizeof( long ) ); for( i = 0, j = 0; i < desc->num_elem_desc; ++i ) if( string_contained( desc->elems[i].type, typelist ) ) { ranges[j++] = desc->elems[i].desc.start_id; ranges[j++] = desc->elems[i].desc.count; } *num_ranges_out = merge_ranges( ranges, *num_ranges_out ); return ranges; }
static int id_contained | ( | long | file_id, |
const long * | ranges, | ||
int | num_range | ||
) | [static] |
Definition at line 279 of file validate.c.
Referenced by ids_contained().
{ const long* end = ranges + 2 * num_range; for( ; ranges != end; ranges += 2 ) { if( file_id >= ranges[0] && ( file_id - ranges[0] ) < ranges[1] ) return 1; } return 0; }
static int ids_contained | ( | const long * | ids, |
int | num_ids, | ||
const long * | ranges, | ||
int | num_ranges | ||
) | [static] |
Definition at line 289 of file validate.c.
References id_contained().
Referenced by check_valid_adj_list(), check_valid_elem_conn(), check_valid_parents_children(), check_valid_poly_conn(), check_valid_set_contents(), check_valid_tag(), and check_valid_var_len_tag().
{ int i; for( i = 0; i < num_ids; ++i ) if( !id_contained( ids[i], ranges, num_ranges ) ) return 0; return 1; }
static int lcomp | ( | const void * | p1, |
const void * | p2 | ||
) | [static] |
Definition at line 119 of file validate.c.
Referenced by contains_duplicates(), dcomp(), merge_ranges(), and ranges_contain_duplicates().
{ long l1 = *(const long*)p1; long l2 = *(const long*)p2; return l1 < l2 ? -1 : l1 > l2 ? 1 : 0; }
int main | ( | int | argc, |
char * | argv[] | ||
) |
Definition at line 136 of file validate.c.
References check_file_contains_holes(), check_valid_adjacencies(), check_valid_connectivity(), check_valid_file_ids(), check_valid_sets(), check_valid_tags(), mhdf_EntDesc::count, mhdf_closeFile(), mhdf_getFileSummary(), mhdf_isError(), mhdf_message(), mhdf_openFile(), mhdf_FileDesc::nodes, mhdf_FileDesc::num_elem_desc, and verbose.
{ int result = 0; mhdf_FileHandle file; mhdf_Status status; unsigned long max_id; struct mhdf_FileDesc* desc; if( argc < 2 || argc > 3 ) { fprintf( stderr, "Usage: %s <filename> <verbose_option> \n", argv[0] ); return 1; } file = mhdf_openFile( argv[1], 0, &max_id, -1, &status ); if( mhdf_isError( &status ) ) { fprintf( stderr, "%s: %s\n", argv[1], mhdf_message( &status ) ); return 1; } if( argc == 3 ) { verbose = atoi( argv[2] ); } desc = mhdf_getFileSummary( file, H5T_NATIVE_LONG, &status, 0 ); /*no extra set info*/ if( mhdf_isError( &status ) ) { fprintf( stderr, "%s: %s\n", argv[1], mhdf_message( &status ) ); return 1; } if( desc->nodes.count < 1 ) puts( "WARNING: file contains no vertices." ); if( desc->num_elem_desc < 1 ) puts( "WARNING: file contains no elements." ); result += check_valid_file_ids( desc ); result += check_file_contains_holes( argv[1] ); result += check_valid_connectivity( file, desc ); result += check_valid_adjacencies( file, desc ); result += check_valid_sets( file, desc ); result += check_valid_tags( file, desc ); free( desc ); mhdf_closeFile( file, &status ); return result; }
static int merge_ranges | ( | long * | ranges, |
int | nranges | ||
) | [static] |
Definition at line 880 of file validate.c.
References lcomp().
Referenced by all_id_ranges(), and get_dim_ranges().
{ long i, n; if( nranges < 1 ) return 0; /* merge adjacent */ qsort( ranges, nranges, 2 * sizeof( long ), &lcomp ); n = 1; for( i = 1; i < nranges; ++i ) { if( ranges[2 * n - 2] + ranges[2 * n - 1] == ranges[2 * i] ) { ranges[2 * n - 1] += ranges[2 * i + 1]; /*compact the range*/ } else { /* do not compact, just copy, and increase number of ranges*/ ranges[2 * n] = ranges[2 * i]; ranges[2 * n + 1] = ranges[2 * i + 1]; ++n; } } return n; }
static int ranges_contain_duplicates | ( | long * | ranges, |
long | nranges | ||
) | [static] |
Definition at line 787 of file validate.c.
References lcomp().
Referenced by check_valid_set_contents().
{ long i; qsort( ranges, nranges, 2 * sizeof( long ), &lcomp ); /* sort by first value in each pair */ for( i = 1; i < nranges; ++i ) if( ranges[2 * i - 2] + ranges[2 * i - 1] > ranges[2 * i] ) return 1; return 0; }
static int ranges_contained | ( | const long * | id_ranges, |
int | num_id_ranges, | ||
const long * | ranges, | ||
int | num_ranges | ||
) | [static] |
Definition at line 297 of file validate.c.
Referenced by check_valid_set_contents().
{ int i; long start, count, avail; const long* end = ranges + 2 * num_ranges; const long* iter; for( i = 0; i < num_id_ranges; ++i ) { start = id_ranges[2 * i]; count = id_ranges[2 * i + 1]; while( count > 0 ) { for( iter = ranges; iter != end; iter += 2 ) { if( start >= iter[0] && ( start - iter[0] ) < iter[1] ) break; } if( iter == end ) return 0; avail = iter[1] - ( start - iter[0] ); count -= avail; start += avail; } } return 1; }
static int string_contained | ( | const char * | str, |
const char *const *const | list | ||
) | [static] |
Definition at line 322 of file validate.c.
Referenced by get_dim_ranges().
{ for( ; *list; ++list ) if( !strcmp( str, *list ) ) return 1; return 0; }
int verbose = 0 |
program-wide verbose output flag
Definition at line 134 of file validate.c.
Referenced by check_valid_adj_list(), check_valid_elem_conn(), check_valid_end_indices(), check_valid_parents_children(), check_valid_poly_conn(), check_valid_set_contents(), main(), merge_input_surfs(), obbstat_write(), obbvis_create(), and replace_surface().