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Mesh Oriented datABase
(version 5.4.1)
Array-based unstructured mesh datastructure
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Mesh Oriented datABase
(version 5.4.1)
Array-based unstructured mesh datastructure
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#include <iostream>#include <cmath>#include "moab/Core.hpp"#include "moab/Interface.hpp"#include "moab/IntxMesh/Intx2MeshOnSphere.hpp"#include "moab/ProgOptions.hpp"#include "MBTagConventions.hpp"#include "moab/IntxMesh/IntxUtils.hpp"#include "IntxUtilsCSLAM.hpp"#include "TestUtil.hpp"
Include dependency graph for case1_test.cpp:Go to the source code of this file.
Functions | |
| ErrorCode | manufacture_lagrange_mesh_on_sphere (Interface *mb, EntityHandle euler_set, EntityHandle &lagr_set) |
| int | main (int argc, char **argv) |
Variables | |
| double | gtol = 0.0001 |
| double | CubeSide = 6. |
| double | t = 0.1 |
| double | delta_t = 0.43 |
| int main | ( | int | argc, |
| char ** | argv | ||
| ) |
Definition at line 97 of file case1_test.cpp.
References moab::IntxAreaUtils::area_on_sphere(), moab::Interface::create_meshset(), CubeSide, delta_t, moab::IntxUtils::enforce_convexity(), ErrorCode, moab::Intx2Mesh::FindMaxEdges(), gtol, moab::Intx2Mesh::intersect_meshes(), moab::Interface::load_file(), manufacture_lagrange_mesh_on_sphere(), mb, MB_SUCCESS, MESHSET_SET, radius, moab::Intx2Mesh::set_error_tolerance(), moab::Intx2MeshOnSphere::set_radius_destination_mesh(), moab::Intx2MeshOnSphere::set_radius_source_mesh(), STRINGIFY, and moab::Interface::write_file().
{
const char* filename_mesh1 = STRINGIFY( MESHDIR ) "/mbcslam/eulerHomme.vtk";
if( argc > 1 )
{
int index = 1;
while( index < argc )
{
if( !strcmp( argv[index], "-gtol" ) ) // this is for geometry tolerance
{
gtol = atof( argv[++index] );
}
if( !strcmp( argv[index], "-cube" ) )
{
CubeSide = atof( argv[++index] );
}
if( !strcmp( argv[index], "-dt" ) )
{
delta_t = atof( argv[++index] );
}
if( !strcmp( argv[index], "-input" ) )
{
filename_mesh1 = argv[++index];
}
index++;
}
}
std::cout << " case 1: use -gtol " << gtol << " -dt " << delta_t << " -cube " << CubeSide << " -input "
<< filename_mesh1 << "\n";
Core moab;
Interface& mb = moab;
EntityHandle euler_set;
ErrorCode rval;
rval = mb.create_meshset( MESHSET_SET, euler_set );
if( MB_SUCCESS != rval ) return 1;
rval = mb.load_file( filename_mesh1, &euler_set );
if( MB_SUCCESS != rval ) return 1;
// everybody will get a DP tag, including the non owned entities; so exchange tags is not
// required for LOC (here)
EntityHandle lagrange_set;
rval = manufacture_lagrange_mesh_on_sphere( &mb, euler_set, lagrange_set );
if( MB_SUCCESS != rval ) return 1;
rval = mb.write_file( "lagrIni.h5m", 0, 0, &lagrange_set, 1 );
if( MB_SUCCESS != rval ) std::cout << "can't write lagr set\n";
rval = moab::IntxUtils::enforce_convexity( &mb, lagrange_set );
if( MB_SUCCESS != rval ) return 1;
rval = mb.write_file( "lagr.h5m", 0, 0, &lagrange_set, 1 );
if( MB_SUCCESS != rval ) std::cout << "can't write lagr set\n";
Intx2MeshOnSphere worker( &mb );
double radius = CubeSide / 2 * sqrt( 3. ); // input
worker.set_radius_source_mesh( radius );
worker.set_radius_destination_mesh( radius );
// worker.SetEntityType(MBQUAD);
worker.set_error_tolerance( gtol );
std::cout << "error tolerance epsilon_1=" << gtol << "\n";
EntityHandle outputSet;
rval = mb.create_meshset( MESHSET_SET, outputSet );
if( MB_SUCCESS != rval ) return 1;
rval = worker.FindMaxEdges( lagrange_set, euler_set );
if( MB_SUCCESS != rval ) return 1;
rval = worker.intersect_meshes( lagrange_set, euler_set, outputSet );
if( MB_SUCCESS != rval ) return 1;
// std::string opts_write("");
std::stringstream outf;
outf << "intersect1"
<< ".h5m";
rval = mb.write_file( outf.str().c_str(), 0, 0, &outputSet, 1 );
if( MB_SUCCESS != rval ) std::cout << "can't write output\n";
moab::IntxAreaUtils sphAreaUtils;
double intx_area = sphAreaUtils.area_on_sphere( &mb, outputSet, radius );
double arrival_area = sphAreaUtils.area_on_sphere( &mb, euler_set, radius );
std::cout << " Arrival area: " << arrival_area << " intersection area:" << intx_area
<< " rel error: " << fabs( ( intx_area - arrival_area ) / arrival_area ) << "\n";
if( MB_SUCCESS != rval ) return 1;
return 0;
}
| ErrorCode manufacture_lagrange_mesh_on_sphere | ( | Interface * | mb, |
| EntityHandle | euler_set, | ||
| EntityHandle & | lagr_set | ||
| ) |
Definition at line 29 of file case1_test.cpp.
References moab::Interface::add_entities(), moab::Range::begin(), moab::Interface::create_element(), moab::Interface::create_meshset(), moab::Interface::create_vertex(), CubeSide, delta_t, IntxUtilsCSLAM::departure_point_case1(), moab::Range::end(), ErrorCode, moab::Interface::get_connectivity(), moab::Interface::get_coords(), moab::Interface::get_entities_by_type(), MB_SUCCESS, MBQUAD, MESHSET_SET, radius, and t.
Referenced by main().
{
/*
* get all quads first, then vertices, then move them on the surface of the sphere
* radius is in, it comes from MeshKit/python/examples/manufHomme.py :
* length = 6.
* each edge of the cube will be divided using this meshcount
* meshcount = 11
* circumscribed sphere radius
* radius = length * math.sqrt(3) /2
*/
double radius = CubeSide / 2 * sqrt( 3. ); // our value depends on cube side
Range quads;
ErrorCode rval = mb->get_entities_by_type( euler_set, MBQUAD, quads );
if( MB_SUCCESS != rval ) return rval;
Range connecVerts;
rval = mb->get_connectivity( quads, connecVerts );
if( MB_SUCCESS != rval ) return rval;
// create new set
rval = mb->create_meshset( MESHSET_SET, lagr_set );
if( MB_SUCCESS != rval ) return rval;
// get the coordinates of the old mesh, and move it around the sphere according to case 1
// now put the vertices in the right place....
// int vix=0; // vertex index in new array
// first create departure points (vertices in the lagrange mesh)
// then connect them in quads
std::map< EntityHandle, EntityHandle > newNodes;
for( Range::iterator vit = connecVerts.begin(); vit != connecVerts.end(); ++vit )
{
EntityHandle oldV = *vit;
CartVect posi;
rval = mb->get_coords( &oldV, 1, &( posi[0] ) );
if( MB_SUCCESS != rval ) return rval;
// Intx utils, case 1
CartVect newPos;
IntxUtilsCSLAM::departure_point_case1( posi, t, delta_t, newPos );
newPos = radius * newPos;
EntityHandle new_vert;
rval = mb->create_vertex( &( newPos[0] ), new_vert );
if( MB_SUCCESS != rval ) return rval;
newNodes[oldV] = new_vert;
}
for( Range::iterator it = quads.begin(); it != quads.end(); ++it )
{
EntityHandle q = *it;
int nnodes;
const EntityHandle* conn4;
rval = mb->get_connectivity( q, conn4, nnodes );
if( MB_SUCCESS != rval ) return rval;
EntityHandle new_conn[4];
for( int i = 0; i < nnodes; i++ )
{
EntityHandle v1 = conn4[i];
new_conn[i] = newNodes[v1];
}
EntityHandle new_quad;
rval = mb->create_element( MBQUAD, new_conn, 4, new_quad );
if( MB_SUCCESS != rval ) return rval;
rval = mb->add_entities( lagr_set, &new_quad, 1 );
if( MB_SUCCESS != rval ) return rval;
}
return rval;
}
| double CubeSide = 6. |
Definition at line 26 of file case1_test.cpp.
Referenced by main(), and manufacture_lagrange_mesh_on_sphere().
| double delta_t = 0.43 |
Definition at line 27 of file case1_test.cpp.
Referenced by compute_tracer_case1(), get_departure_grid(), main(), manufacture_lagrange_mesh_on_sphere(), and moab::SmoothCurve::u_from_position().
| double gtol = 0.0001 |
Definition at line 25 of file case1_test.cpp.
| double t = 0.1 |
Definition at line 27 of file case1_test.cpp.
Referenced by add_tag_counts(), MetisPartitioner::assemble_taggedsets_graph(), moab::ReadNASTRAN::assign_ids(), moab::HiReconstruction::average_vertex_tangent(), moab::box_from_axes(), moab::SequenceManager::clear(), moab::GeomUtil::closest_location_on_polygon(), moab::GeomUtil::closest_location_on_tri(), moab::NCWriteHelper::collect_variable_data(), compute_tracer_case1(), compute_velocity_case1(), moab::ReadCGM::create_group_entsets(), moab::Coupler::create_tuples(), moab::BSPTreePoly::cut_polyhedron(), moab::ReadABAQUS::cyl2rect(), moab::Skinner::deinitialize(), departure_point_swirl_rot(), moab::HalfFacetRep::determine_border_vertices(), moab::CN::Dimension(), moab::ParallelComm::estimate_ents_buffer_size(), moab::DenseTag::find_entities_with_value(), moab::VarLenDenseTag::find_entities_with_value(), moab::Skinner::find_skin_vertices_3D(), smoab::Interface::findEntitiesWithTag(), gather_tag_counts(), get_departure_grid(), moab::SequenceManager::get_entities(), moab::BitTag::get_entities_with_bits(), moab::Coupler::get_matching_entities(), moab::AEntityFactory::get_memory_use(), moab::BitTag::get_memory_use(), moab::DenseTag::get_memory_use(), moab::VarLenDenseTag::get_memory_use(), moab::SequenceManager::get_number_entities(), moab::ReadUtil::get_ordered_vertices(), moab::BitTag::get_tagged(), moab::get_tagged(), moab::DenseTag::get_tagged_entities(), moab::ReorderTool::handle_order_from_int_tag(), iMeshP_pushTags(), moab::NCHelperHOMME::init_mesh_vals(), moab::NCHelperFV::init_mesh_vals(), moab::NCHelperGCRM::init_mesh_vals(), moab::NCHelperMPAS::init_mesh_vals(), moab::NCHelperEuler::init_mesh_vals(), moab::Coupler::interpolate(), MBiMesh::is_ent_handle_tag(), MBiMesh::is_set_handle_tag(), itaps_tag_cast(), moab::RayIntersectSets::leaf(), moab::TempestOnlineMap::LinearRemapGLLtoGLL2_MOAB(), moab::TempestOnlineMap::LinearRemapGLLtoGLL2_Pointwise_MOAB(), moab::Core::load_file(), lob_bnd_2(), main(), manufacture_lagrange_mesh_on_sphere(), min_edge_length(), moab::Coupler::normalize_subset(), MBiMesh::note_ent_handle_tag(), MBiMesh::note_set_handle_tag(), MBiMesh::note_tag_destroyed(), moab::operator<<(), MetisPartitioner::partition_mesh(), ZoltanPartitioner::partition_mesh_and_geometry(), moab::ParallelMergeMesh::PerformRealSort(), moab::permute_this(), moab::plane_cut_edge(), moab::point_perp(), moab::SmoothCurve::position_from_u(), moab::Core::print_database(), print_memory_stats(), print_tag_counts(), moab::DGMSolver::qr_polyfit_safeguarded(), moab::TupleList::radix_index_sort(), moab::TupleList::radix_offsets(), moab::AdaptiveKDTree::ray_intersect_triangles(), moab::OrientedBoxTreeTool::ray_intersect_triangles(), moab::SmoothFace::ray_intersection_correct(), moab::GeomUtil::ray_tri_intersect(), moab::ReadHDF5::read_elems(), moab::ScdNCHelper::read_scd_variables_to_nonset(), moab::ScdNCHelper::read_scd_variables_to_nonset_allocate(), moab::NCHelperHOMME::read_ucd_variables_to_nonset(), moab::NCHelperGCRM::read_ucd_variables_to_nonset(), moab::NCHelperMPAS::read_ucd_variables_to_nonset(), moab::NCHelperHOMME::read_ucd_variables_to_nonset_allocate(), moab::NCHelperMPAS::read_ucd_variables_to_nonset_allocate(), moab::NCHelperGCRM::read_ucd_variables_to_nonset_allocate(), moab::NCHelper::read_variables_to_set(), moab::NCHelper::read_variables_to_set_allocate(), moab::SimplexTemplateRefiner::refine_3_simplex(), moab::BitTag::release_all_data(), moab::SequenceManager::release_tag_array(), moab::ReorderTool::reorder_entities(), ZoltanPartitioner::repartition(), moab::CN::resetPermutation(), moab::ParallelComm::resolve_shared_sets(), moab::rev_permute_this(), moab::CN::setPermutation(), moab::TagInfo::size_from_data_type(), moab::ReadABAQUS::sph2rect(), moab::OrientedBoxTreeTool::sphere_intersect_triangles(), moab::ParallelMergeMesh::SwapTuples(), moab::HomXform::three_pt_xform(), moab::Core::valid_tag_handle(), moab::WriteVtk::write_bit_tag(), moab::WriteVtk::write_elems(), moab::NCWriteMPAS::write_nonset_variables(), moab::NCWriteGCRM::write_nonset_variables(), moab::NCWriteHOMME::write_nonset_variables(), moab::ScdNCWriteHelper::write_nonset_variables(), moab::WriteHDF5::write_qa(), moab::WriteVtk::write_tag(), and moab::TempestOnlineMap::WriteHDF5MapFile().
1.7.6.1.
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