nodes.c

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/**
 * MOAB, a Mesh-Oriented datABase, is a software component for creating,
 * storing and accessing finite element mesh data.
 *
 * Copyright 2004 Sandia Corporation.  Under the terms of Contract
 * DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government
 * retains certain rights in this software.
 *
 * This library is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2.1 of the License, or (at your option) any later version.
 *
 */

#include 
#include 
#include 
#include 
#include "mhdf.h"
#include "status.h"
#include "names-and-paths.h"
#include "util.h"
#include "file-handle.h"

int mhdf_haveNodes( mhdf_FileHandle file, mhdf_Status* status )
{
    FileHandle* file_ptr = (FileHandle*)file;
    hid_t root_id, node_id;
    int result;
    API_BEGIN;

    if( !mhdf_check_valid_file( file_ptr, status ) ) return -1;

#if defined( H5Gopen_vers ) && H5Gopen_vers > 1
    root_id = H5Gopen2( file_ptr->hdf_handle, ROOT_GROUP, H5P_DEFAULT );
#else
    root_id = H5Gopen( file_ptr->hdf_handle, ROOT_GROUP );
#endif
    if( root_id < 0 )
    {
        mhdf_setFail( status, "H5Gopen( \"%s\" ) failed.", ROOT_GROUP );
        return -1;
    }

    result = mhdf_is_in_group( root_id, NODE_GROUP_NAME, status );
    if( result < 1 )
    {
        H5Gclose( root_id );
        return result;
    }

#if defined( H5Gopen_vers ) && H5Gopen_vers > 1
    node_id = H5Gopen2( root_id, NODE_GROUP_NAME, H5P_DEFAULT );
#else
    node_id = H5Gopen( root_id, NODE_GROUP_NAME );
#endif
    H5Gclose( root_id );
    if( node_id < 0 )
    {
        mhdf_setFail( status, "H5Gopen( \"%s\" ) failed.", NODE_GROUP );
        return -1;
    }

    result = mhdf_is_in_group( node_id, NODE_COORD_NAME, status );
    if( result >= 0 ) mhdf_setOkay( status );
    H5Gclose( node_id );
    API_END;
    return result;
}

hid_t mhdf_createNodeCoords( mhdf_FileHandle file_handle,
                             int dimension,
                             long num_nodes,
                             long* first_id_out,
                             mhdf_Status* status )
{
    FileHandle* file_ptr = (FileHandle*)file_handle;
    hid_t table_id;
    hsize_t dims[2];
    long first_id;
    API_BEGIN;

    if( !mhdf_check_valid_file( file_ptr, status ) ) return -1;

    if( dimension < 1 )
    {
        mhdf_setFail( status, "Invalid argument: dimension = %d.", dimension );
        return -1;
    }

    dims[0]  = (hsize_t)num_nodes;
    dims[1]  = (hsize_t)dimension;
    table_id = mhdf_create_table( file_ptr->hdf_handle, NODE_COORD_PATH, H5T_NATIVE_DOUBLE, 2, dims, status );
    if( table_id < 0 ) return -1;

    first_id = file_ptr->max_id + 1;
    if( !mhdf_create_scalar_attrib( table_id, START_ID_ATTRIB, H5T_NATIVE_LONG, &first_id, status ) )
    {
        H5Dclose( table_id );
        return -1;
    }

    *first_id_out = first_id;
    file_ptr->max_id += num_nodes;
    if( !mhdf_write_max_id( file_ptr, status ) )
    {
        H5Dclose( table_id );
        return -1;
    }
    file_ptr->open_handle_count++;
    mhdf_setOkay( status );

    API_END_H( 1 );
    return table_id;
}

hid_t mhdf_openNodeCoords( mhdf_FileHandle file_handle,
                           long* num_nodes_out,
                           int* dimension_out,
                           long* first_id_out,
                           mhdf_Status* status )
{
    FileHandle* file_ptr = (FileHandle*)file_handle;
    hid_t table_id;
    hsize_t dims[2];
    API_BEGIN;

    if( !mhdf_check_valid_file( file_ptr, status ) ) return -1;

    table_id = mhdf_open_table2( file_ptr->hdf_handle, NODE_COORD_PATH, 2, dims, first_id_out, status );
    if( table_id < 0 ) return -1;

    *num_nodes_out = dims[0];
    *dimension_out = dims[1];
    file_ptr->open_handle_count++;
    mhdf_setOkay( status );
    API_END_H( 1 );
    return table_id;
}

hid_t mhdf_openNodeCoordsSimple( mhdf_FileHandle file_handle, mhdf_Status* status )
{
    FileHandle* file_ptr = (FileHandle*)file_handle;
    hid_t table_id;
    API_BEGIN;

    if( !mhdf_check_valid_file( file_ptr, status ) ) return -1;

    table_id = mhdf_open_table_simple( file_ptr->hdf_handle, NODE_COORD_PATH, status );
    if( table_id < 0 ) return -1;

    file_ptr->open_handle_count++;
    mhdf_setOkay( status );
    API_END_H( 1 );
    return table_id;
}

void mhdf_writeNodeCoords( hid_t table_id, long offset, long count, const double* coords, mhdf_Status* status )
{
    API_BEGIN;
    mhdf_write_data( table_id, offset, count, H5T_NATIVE_DOUBLE, coords, H5P_DEFAULT, status );
    API_END;
}
void mhdf_writeNodeCoordsWithOpt( hid_t table_id,
                                  long offset,
                                  long count,
                                  const double* coords,
                                  hid_t prop,
                                  mhdf_Status* status )
{
    API_BEGIN;
    mhdf_write_data( table_id, offset, count, H5T_NATIVE_DOUBLE, coords, prop, status );
    API_END;
}

void mhdf_readNodeCoords( hid_t table_id, long offset, long count, double* coords, mhdf_Status* status )
{
    API_BEGIN;
    mhdf_read_data( table_id, offset, count, H5T_NATIVE_DOUBLE, coords, H5P_DEFAULT, status );
    API_END;
}
void mhdf_readNodeCoordsWithOpt( hid_t table_id,
                                 long offset,
                                 long count,
                                 double* coords,
                                 hid_t prop,
                                 mhdf_Status* status )
{
    API_BEGIN;
    mhdf_read_data( table_id, offset, count, H5T_NATIVE_DOUBLE, coords, prop, status );
    API_END;
}

void mhdf_writeNodeCoord( hid_t table_id,
                          long offset,
                          long count,
                          int dimension,
                          const double* coords,
                          mhdf_Status* status )
{
    API_BEGIN;
    mhdf_write_column( table_id, dimension, offset, count, H5T_NATIVE_DOUBLE, coords, H5P_DEFAULT, status );
    API_END;
}
void mhdf_writeNodeCoordWithOpt( hid_t table_id,
                                 long offset,
                                 long count,
                                 int dimension,
                                 const double* coords,
                                 hid_t prop,
                                 mhdf_Status* status )
{
    API_BEGIN;
    mhdf_write_column( table_id, dimension, offset, count, H5T_NATIVE_DOUBLE, coords, prop, status );
    API_END;
}

void mhdf_readNodeCoord( hid_t table_id, long offset, long count, int dimension, double* coords, mhdf_Status* status )
{
    API_BEGIN;
    mhdf_read_column( table_id, dimension, offset, count, H5T_NATIVE_DOUBLE, coords, H5P_DEFAULT, status );
    API_END;
}
void mhdf_readNodeCoordWithOpt( hid_t table_id,
                                long offset,
                                long count,
                                int dimension,
                                double* coords,
                                hid_t prop,
                                mhdf_Status* status )
{
    API_BEGIN;
    mhdf_read_column( table_id, dimension, offset, count, H5T_NATIVE_DOUBLE, coords, prop, status );
    API_END;
}