MOAB: Mesh Oriented datABase  (version 5.3.0)
uref_hirec_test.cpp File Reference
#include <iostream>
#include <string>
#include <sstream>
#include <ctime>
#include <vector>
#include <algorithm>
#include "moab/Core.hpp"
#include "moab/Range.hpp"
#include "moab/MeshTopoUtil.hpp"
#include "moab/NestedRefine.hpp"
#include "moab/DiscreteGeometry/DGMSolver.hpp"
#include "moab/DiscreteGeometry/HiReconstruction.hpp"
#include "TestUtil.hpp"
#include "geomObject.cpp"
#include <cmath>
#include <cstdlib>
+ Include dependency graph for uref_hirec_test.cpp:

Go to the source code of this file.

Defines

#define nsamples   10

Functions

ErrorCode test_closedsurface_mesh (const char *filename, int *level_degrees, int num_levels, int degree, bool interp, int dim, geomObject *obj)
ErrorCode closedsurface_uref_hirec_convergence_study (const char *filename, int *level_degrees, int num_levels, std::vector< int > &degs2fit, bool interp, geomObject *obj)
void usage ()
int main (int argc, char *argv[])

Define Documentation

#define nsamples   10

Definition at line 36 of file uref_hirec_test.cpp.

Referenced by closedsurface_uref_hirec_convergence_study().


Function Documentation

ErrorCode closedsurface_uref_hirec_convergence_study ( const char *  filename,
int *  level_degrees,
int  num_levels,
std::vector< int > &  degs2fit,
bool  interp,
geomObject obj 
)

Definition at line 136 of file uref_hirec_test.cpp.

References b, moab::Range::begin(), geomObject::compute_projecterror(), conn, moab::Interface::create_meshset(), moab::Range::end(), moab::error(), ErrorCode, MBMesquite::eta, moab::NestedRefine::generate_mesh_hierarchy(), moab::Interface::get_connectivity(), moab::Interface::get_coords(), moab::Interface::get_entities_by_dimension(), moab::ParallelComm::get_pcomm(), moab::HiReconstruction::hiproj_walf_in_element(), moab::Interface::load_file(), MB_CHK_ERR, MBQUAD, MBTRI, mesh, MESHSET_SET, MPI_COMM_WORLD, N, nsamples, geomObject::project_points2geom(), read_options, moab::HiReconstruction::reconstruct3D_surf_geom(), moab::Interface::set_coords(), moab::Range::size(), moab::sum(), moab::TYPE_FROM_HANDLE(), and MBMesquite::xi.

{
    Core moab;
    Interface* mbImpl = &moab;
    ParallelComm* pc  = NULL;
    EntityHandle fileset;
    ErrorCode error;
    error = mbImpl->create_meshset( moab::MESHSET_SET, fileset );MB_CHK_ERR( error );
    // load mesh from file
#ifdef MOAB_HAVE_MPI
    MPI_Comm comm = MPI_COMM_WORLD;
    EntityHandle partnset;
    error = mbImpl->create_meshset( moab::MESHSET_SET, partnset );MB_CHK_ERR( error );
    pc        = moab::ParallelComm::get_pcomm( mbImpl, partnset, &comm );
    int procs = 1;
    MPI_Comm_size( comm, &procs );

    if( procs > 1 )
    {
        read_options = "PARALLEL=READ_PART;PARTITION=PARALLEL_PARTITION;PARALLEL_RESOLVE_SHARED_ENTS;";
        error        = mbImpl->load_file( filename, &fileset, read_options.c_str() );MB_CHK_ERR( error );
    }
    else
    {
        error = mbImpl->load_file( filename, &fileset );MB_CHK_ERR( error );
    }

#else
    error = mbImpl->load_file( filename, &fileset );MB_CHK_ERR( error );
#endif
    // Generate hierarchy
    NestedRefine uref( &moab, pc, fileset );
    std::vector< EntityHandle > meshes;
    std::vector< int > meshsizes;
    error = uref.generate_mesh_hierarchy( num_levels, level_degrees, meshes );MB_CHK_ERR( error );
    std::vector< std::vector< double > > geoml1errs( 1 + degs2fit.size() ), geoml2errs( 1 + degs2fit.size() ),
        geomlinferrs( 1 + degs2fit.size() );

    // Perform high order reconstruction on each level of mesh (projected onto exact geometry) and
    // estimate geometric error with various degrees of fitting
    for( size_t i = 0; i < meshes.size(); ++i )
    {
        EntityHandle& mesh = meshes[i];
        // project onto exact geometry since each level with uref has only linear coordinates
        Range verts;
        error = mbImpl->get_entities_by_dimension( mesh, 0, verts );MB_CHK_ERR( error );

        for( Range::iterator ivert = verts.begin(); ivert != verts.end(); ++ivert )
        {
            EntityHandle currvert = *ivert;
            double currcoords[3], exactcoords[3];
            error = mbImpl->get_coords( &currvert, 1, currcoords );
            obj->project_points2geom( 3, currcoords, exactcoords, NULL );
            error = mbImpl->set_coords( &currvert, 1, exactcoords );
        }

        // generate random points on each elements, assument 3D coordinates
        Range elems;
        error = mbImpl->get_entities_by_dimension( mesh, 2, elems );MB_CHK_ERR( error );
        meshsizes.push_back( elems.size() );
        int nvpe = TYPE_FROM_HANDLE( *elems.begin() ) == MBTRI ? 3 : 4;
        std::vector< double > testpnts, testnaturalcoords;
        testpnts.reserve( 3 * elems.size() * nsamples );
        testnaturalcoords.reserve( nvpe * elems.size() * nsamples );

        for( Range::iterator ielem = elems.begin(); ielem != elems.end(); ++ielem )
        {
            EntityHandle currelem = *ielem;
            std::vector< EntityHandle > conn;
            error = mbImpl->get_connectivity( &currelem, 1, conn );MB_CHK_ERR( error );
            nvpe = conn.size();
            std::vector< double > elemcoords( 3 * conn.size() );
            error = mbImpl->get_coords( &( conn[0] ), conn.size(), &( elemcoords[0] ) );MB_CHK_ERR( error );
            EntityType type = TYPE_FROM_HANDLE( currelem );

            for( int s = 0; s < nsamples; ++s )
            {
                if( type == MBTRI )
                {
                    double a = (double)rand() / RAND_MAX, b = (double)rand() / RAND_MAX, c = (double)rand() / RAND_MAX,
                           sum;
                    sum = a + b + c;

                    if( sum < 1e-12 )
                    {
                        --s;
                        continue;
                    }
                    else
                    {
                        a /= sum, b /= sum, c /= sum;
                    }

                    testpnts.push_back( a * elemcoords[0] + b * elemcoords[3] + c * elemcoords[6] );
                    testpnts.push_back( a * elemcoords[1] + b * elemcoords[4] + c * elemcoords[7] );
                    testpnts.push_back( a * elemcoords[2] + b * elemcoords[5] + c * elemcoords[8] );
                    testnaturalcoords.push_back( a );
                    testnaturalcoords.push_back( b );
                    testnaturalcoords.push_back( c );
                }
                else if( type == MBQUAD )
                {
                    double xi = (double)rand() / RAND_MAX, eta = (double)rand() / RAND_MAX, N[4];
                    xi   = 2 * xi - 1;
                    eta  = 2 * eta - 1;
                    N[0] = ( 1 - xi ) * ( 1 - eta ) / 4, N[1] = ( 1 + xi ) * ( 1 - eta ) / 4,
                    N[2] = ( 1 + xi ) * ( 1 + eta ) / 4, N[3] = ( 1 - xi ) * ( 1 + eta ) / 4;
                    testpnts.push_back( N[0] * elemcoords[0] + N[1] * elemcoords[3] + N[2] * elemcoords[6] +
                                        N[3] * elemcoords[9] );
                    testpnts.push_back( N[0] * elemcoords[1] + N[1] * elemcoords[4] + N[2] * elemcoords[7] +
                                        N[3] * elemcoords[10] );
                    testpnts.push_back( N[0] * elemcoords[2] + N[1] * elemcoords[5] + N[2] * elemcoords[8] +
                                        N[3] * elemcoords[11] );
                    testnaturalcoords.push_back( N[0] );
                    testnaturalcoords.push_back( N[1] );
                    testnaturalcoords.push_back( N[2] );
                    testnaturalcoords.push_back( N[3] );
                }
                else
                {
                    throw std::invalid_argument( "NOT SUPPORTED ELEMENT TYPE" );
                }
            }
        }

        // Compute error of linear interpolation
        double l1err, l2err, linferr;
        obj->compute_projecterror( 3, elems.size() * nsamples, &( testpnts[0] ), l1err, l2err, linferr );
        geoml1errs[0].push_back( l1err );
        geoml2errs[0].push_back( l2err );
        geomlinferrs[0].push_back( linferr );
        // Perform high order projection and compute error
        HiReconstruction hirec( &moab, pc, mesh );

        for( size_t ideg = 0; ideg < degs2fit.size(); ++ideg )
        {
            // High order reconstruction
            error = hirec.reconstruct3D_surf_geom( degs2fit[ideg], interp, false, true );MB_CHK_ERR( error );
            int index = 0;

            for( Range::iterator ielem = elems.begin(); ielem != elems.end(); ++ielem, ++index )
            {
                // Projection
                error = hirec.hiproj_walf_in_element( *ielem, nvpe, nsamples,
                                                      &( testnaturalcoords[nvpe * nsamples * index] ),
                                                      &( testpnts[3 * nsamples * index] ) );MB_CHK_ERR( error );
            }

            // Estimate error
            obj->compute_projecterror( 3, elems.size() * nsamples, &( testpnts[0] ), l1err, l2err, linferr );
            geoml1errs[ideg + 1].push_back( l1err );
            geoml2errs[ideg + 1].push_back( l2err );
            geomlinferrs[ideg + 1].push_back( linferr );
        }
    }

    std::cout << "Mesh Size: ";

    for( size_t i = 0; i < meshsizes.size(); ++i )
    {
        std::cout << meshsizes[i] << " ";
    }

    std::cout << std::endl;
    std::cout << "Degrees: 0 ";

    for( size_t ideg = 0; ideg < degs2fit.size(); ++ideg )
    {
        std::cout << degs2fit[ideg] << " ";
    }

    std::cout << std::endl;
    std::cout << "L1-norm error: \n";

    for( size_t i = 0; i < geoml1errs.size(); ++i )
    {
        for( size_t j = 0; j < geoml1errs[i].size(); ++j )
        {
            std::cout << geoml1errs[i][j] << " ";
        }

        std::cout << std::endl;
    }

    std::cout << "L2-norm error: \n";

    for( size_t i = 0; i < geoml2errs.size(); ++i )
    {
        for( size_t j = 0; j < geoml2errs[i].size(); ++j )
        {
            std::cout << geoml2errs[i][j] << " ";
        }

        std::cout << std::endl;
    }

    std::cout << "Linf-norm error: \n";

    for( size_t i = 0; i < geomlinferrs.size(); ++i )
    {
        for( size_t j = 0; j < geomlinferrs[i].size(); ++j )
        {
            std::cout << geomlinferrs[i][j] << " ";
        }

        std::cout << std::endl;
    }

    return error;
}
int main ( int  argc,
char *  argv[] 
)

Definition at line 358 of file uref_hirec_test.cpp.

References closedsurface_uref_hirec_convergence_study(), dim, moab::error(), ErrorCode, geom, MB_CHK_ERR, MPI_COMM_WORLD, rank, test_closedsurface_mesh(), and usage.

{
#ifdef MOAB_HAVE_MPI
    MPI_Init( &argc, &argv );
    int nprocs, rank;
    MPI_Comm_size( MPI_COMM_WORLD, &nprocs );
    MPI_Comm_rank( MPI_COMM_WORLD, &rank );
#endif

    std::string infile = TestDir + "/sphere_tris_5.vtk";

    int degree = 2, dim = 2, geom = 0;
    bool interp = false;
    ErrorCode error;

    if( argc == 10 )
    {
        infile      = std::string( argv[1] );
        bool hasdim = false;

        for( int i = 2; i < argc; ++i )
        {
            if( i + 1 != argc )
            {
                if( std::string( argv[i] ) == "-degree" ) { degree = atoi( argv[++i] ); }
                else if( std::string( argv[i] ) == "-interp" )
                {
                    interp = atoi( argv[++i] );
                }
                else if( std::string( argv[i] ) == "-dim" )
                {
                    dim    = atoi( argv[++i] );
                    hasdim = true;
                }
                else if( std::string( argv[i] ) == "-geom" )
                {
                    geom = std::string( argv[++i] ) == "s" ? 0 : 1;
                }
                else
                {
#ifdef MOAB_HAVE_MPI

                    if( 0 == rank ) { usage(); }
                    MPI_Finalize();

#else
                    usage();
#endif
                    return -1;
                }
            }
        }

        if( !hasdim )
        {
#ifdef MOAB_HAVE_MPI

            if( 0 == rank )
            {
                std::cout << "Dimension of input mesh should be provided, positive and less than 3" << std::endl;
            }

#else
            std::cout << "Dimension of input mesh should be provided, positive and less than 3" << std::endl;
#endif
            return -1;
        }

        if( degree <= 0 || dim > 2 || dim <= 0 )
        {
#ifdef MOAB_HAVE_MPI

            if( 0 == rank )
            {
                std::cout << "Input degree should be positive number;\n";
                std::cout << "Input dimesion should be positive and less than 3;" << std::endl;
            }

#else
            std::cout << "Input degree should be positive number;\n";
            std::cout << "Input dimesion should be positive and less than 3;" << std::endl;
#endif
            return -1;
        }

#ifdef MOAB_HAVE_MPI

        if( 0 == rank )
        {
            std::cout << "Testing on " << infile << " with dimension " << dim << "\n";
            std::string opts = interp ? "interpolation" : "least square fitting";
            std::cout << "High order reconstruction with degree " << degree << " " << opts << std::endl;
        }

#else
        std::cout << "Testing on " << infile << " with dimension " << dim << "\n";
        std::string opts = interp ? "interpolation" : "least square fitting";
        std::cout << "High order reconstruction with degree " << degree << " " << opts << std::endl;
#endif
    }
    else
    {
        if( argc > 1 )
        {
            usage();
            return -1;
        }
    }

    {
        int level_degrees[3] = { 2, 2, 2 };
        int num_levels       = 3;

        // create the geometry object
        geomObject* obj;
        if( geom )
            obj = new torus();
        else
            obj = new sphere();

        error = test_closedsurface_mesh( infile.c_str(), level_degrees, num_levels, degree, interp, dim, obj );MB_CHK_ERR( error );

        std::vector< int > degs2fit( 6 );
        for( int d = 1; d <= 6; ++d )
        {
            degs2fit[d - 1] = d;
        }

        // Call the higher order reconstruction routines and compute error convergence
        error = closedsurface_uref_hirec_convergence_study( infile.c_str(), level_degrees, num_levels, degs2fit, interp,
                                                            obj );MB_CHK_ERR( error );
        // cleanup memory
        delete obj;
    }

#ifdef MOAB_HAVE_MPI
    MPI_Finalize();
#endif
    return 0;
}
ErrorCode test_closedsurface_mesh ( const char *  filename,
int *  level_degrees,
int  num_levels,
int  degree,
bool  interp,
int  dim,
geomObject obj 
)

Definition at line 42 of file uref_hirec_test.cpp.

References moab::Range::begin(), moab::NestedRefine::child_to_parent(), geomObject::compute_projecterror(), conn, moab::Interface::create_meshset(), moab::Range::end(), moab::error(), ErrorCode, moab::NestedRefine::generate_mesh_hierarchy(), moab::NestedRefine::get_adjacencies(), moab::Interface::get_connectivity(), moab::Interface::get_coords(), moab::Interface::get_entities_by_dimension(), moab::ParallelComm::get_pcomm(), moab::DGMSolver::get_tri_natural_coords(), moab::HiReconstruction::hiproj_walf_in_element(), moab::Interface::load_file(), MB_CHK_ERR, MBTRI, MESHSET_SET, MPI_COMM_WORLD, read_options, moab::HiReconstruction::reconstruct3D_surf_geom(), moab::Range::size(), and moab::TYPE_FROM_HANDLE().

Referenced by main().

{
    Core moab;
    Interface* mbImpl = &moab;
    ParallelComm* pc  = NULL;
    EntityHandle fileset;
    ErrorCode error;
    error = mbImpl->create_meshset( moab::MESHSET_SET, fileset );MB_CHK_ERR( error );
    // load mesh from file
#ifdef MOAB_HAVE_MPI
    MPI_Comm comm = MPI_COMM_WORLD;
    EntityHandle partnset;
    error = mbImpl->create_meshset( moab::MESHSET_SET, partnset );MB_CHK_ERR( error );
    pc        = moab::ParallelComm::get_pcomm( mbImpl, partnset, &comm );
    int procs = 1;
    MPI_Comm_size( comm, &procs );

    if( procs > 1 )
    {
        read_options = "PARALLEL=READ_PART;PARTITION=PARALLEL_PARTITION;PARALLEL_RESOLVE_SHARED_ENTS;";
        error        = mbImpl->load_file( filename, &fileset, read_options.c_str() );MB_CHK_ERR( error );
    }
    else
    {
        error = mbImpl->load_file( filename, &fileset );MB_CHK_ERR( error );
    }

#else
    error = mbImpl->load_file( filename, &fileset );MB_CHK_ERR( error );
#endif

    // Generate hierarchy
    // error = refine_entities(&moab, pc, fileset, level_degrees, num_levels, true);
    // CHECK_ERR(error);
    NestedRefine uref( &moab, pc, fileset );
    std::vector< EntityHandle > meshes;
    error = uref.generate_mesh_hierarchy( num_levels, level_degrees, meshes );MB_CHK_ERR( error );

    // Perform high order reconstruction on level 0 mesh
    HiReconstruction hirec( &moab, pc, fileset );
    assert( dim == 2 );
    error = hirec.reconstruct3D_surf_geom( degree, interp, false );MB_CHK_ERR( error );

    // High order projection
    Range verts, vorig;
    error = mbImpl->get_entities_by_dimension( meshes.back(), 0, verts );MB_CHK_ERR( error );
    error = mbImpl->get_entities_by_dimension( meshes.front(), 0, vorig );MB_CHK_ERR( error );
    int nvorig   = vorig.size();
    double l1err = 0, l2err = 0, linferr = 0;

    for( Range::iterator ivert = verts.begin() + nvorig; ivert != verts.end(); ++ivert )
    {
        // locate the element in level 0 mesh, on which *ivert is lying
        EntityHandle currvert = *ivert;

        std::vector< EntityHandle > parentEntities;
        error = uref.get_adjacencies( *ivert, 2, parentEntities );MB_CHK_ERR( error );
        assert( parentEntities.size() );

        EntityHandle rootelem;
        error = uref.child_to_parent( parentEntities[0], num_levels, 0, &rootelem );MB_CHK_ERR( error );

        // compute the natural coordinates of *ivert in this element
        assert( TYPE_FROM_HANDLE( rootelem ) == MBTRI );

        const EntityHandle* conn;
        int nvpe = 3;
        error    = mbImpl->get_connectivity( rootelem, conn, nvpe );MB_CHK_ERR( error );

        std::vector< double > cornercoords( 3 * nvpe ), currcoords( 3 );
        error = mbImpl->get_coords( conn, nvpe, &( cornercoords[0] ) );MB_CHK_ERR( error );
        error = mbImpl->get_coords( &currvert, 1, &( currcoords[0] ) );MB_CHK_ERR( error );

        std::vector< double > naturalcoords2fit( 3 );
        DGMSolver::get_tri_natural_coords( 3, &( cornercoords[0] ), 1, &( currcoords[0] ), &( naturalcoords2fit[0] ) );

        // project onto the estimated geometry
        double hicoords[3];
        error = hirec.hiproj_walf_in_element( rootelem, nvpe, 1, &( naturalcoords2fit[0] ), hicoords );MB_CHK_ERR( error );

        // estimate error
        double err = obj->compute_projecterror( 3, hicoords );
        l1err += err;
        l2err += err * err;
        linferr = std::max( linferr, err );
    }

    l1err /= verts.size() - nvorig;
    l2err = sqrt( l2err / ( verts.size() - nvorig ) );
    std::cout << "L1 error " << l1err << " L2 error " << l2err << " Linf error " << linferr << std::endl;
    return error;
}
void usage ( )

Definition at line 348 of file uref_hirec_test.cpp.

{
    std::cout << "usage: ./uref_hirec_test <mesh file> -degree <degree> -interp <0=least square, "
                 "1=interpolation> -dim <mesh dimension> -geom <s=sphere,t=torus>"
              << std::endl;
    std::cout << "Example: ./uref_hirec_test $MOAB_SOURCE_DIR/MeshFiles/unittest/sphere_tris_5.vtk "
                 "-degree 2 -interp 0 -dim 2 -geom s"
              << std::endl;
}
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines