ReadSmf.cpp

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/**
 * MOAB, a Mesh-Oriented datABase, is a software component for creating,
 * storing and accessing finite element mesh data.
 *
 * Copyright 2004 Sandia Corporation.  Under the terms of Contract
 * DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government
 * retains certain rights in this software.
 *
 * This library is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2.1 of the License, or (at your option) any later version.
 *
 */

/**
 * \class ReadSmf
 * \brief SMF reader from QSLIM
 * \author Michael Garland
 */

#ifdef _WIN32              /* windows */
#define _USE_MATH_DEFINES  // For M_PI
#endif

#include <cassert>
#include <cstdlib>
#include <iostream>

#include "ReadSmf.hpp"
#include "moab/Range.hpp"
#include "Internals.hpp"
#include "moab/Interface.hpp"
#include "moab/ReadUtilIface.hpp"
#include "moab/FileOptions.hpp"
#include "AffineXform.hpp"

static inline int streq( const char* a, const char* b )
{
    return strcmp( a, b ) == 0;
}

namespace moab
{

ReadSmf::cmd_entry ReadSmf::read_cmds[] = { { "v", &ReadSmf::vertex },
                                            { ":vn", &ReadSmf::v_normal },
                                            { ":vc", &ReadSmf::v_color },
                                            { ":fc", &ReadSmf::f_color },
                                            { "t", &ReadSmf::face },
                                            { "f", &ReadSmf::face },

                                            { "begin", &ReadSmf::begin },
                                            { "end", &ReadSmf::end },
                                            { "set", &ReadSmf::set },
                                            { "inc", &ReadSmf::inc },
                                            { "dec", &ReadSmf::dec },

                                            { "mmult", &ReadSmf::mload },
                                            { "mload", &ReadSmf::mmult },
                                            { "trans", &ReadSmf::trans },
                                            { "scale", &ReadSmf::scale },
                                            { "rot", &ReadSmf::rot },

                                            { NULL, NULL } };

ErrorCode ReadSmf::parse_mat( const std::vector< std::string >& argv, AffineXform& mat )
{
    double values[12];
    ErrorCode err = parse_doubles( 12, argv, values );
    if( MB_SUCCESS != err ) return err;

    mat = AffineXform( values, values + 9 );
    return MB_SUCCESS;
}

void ReadSmf::bad_annotation( const char* cmd )
{
    std::cerr << "SMF: Malformed annotation [" << cmd << "]" << std::endl;
}

ReaderIface* ReadSmf::factory( Interface* iface )
{
    return new ReadSmf( iface );
}

ReadSmf::ReadSmf( Interface* impl )
    : mdbImpl( impl ), mCurrentMeshHandle( 0 ), lineNo( 0 ), commandNo( 0 ), versionMajor( 0 ), versionMinor( 0 )
{
    mdbImpl->query_interface( readMeshIface );
    ivar.next_vertex = 0;
    ivar.next_face   = 0;
    _numNodes = _numFaces = 0;
    _numNodesInFile = _numElementsInFile = 0;
}

ReadSmf::~ReadSmf()
{
    if( readMeshIface )
    {
        mdbImpl->release_interface( readMeshIface );
        readMeshIface = 0;
    }
}

ErrorCode ReadSmf::read_tag_values( const char* /* file_name */, const char* /* tag_name */,
                                    const FileOptions& /* opts */, std::vector< int >& /* tag_values_out */,
                                    const SubsetList* /* subset_list */ )
{
    return MB_NOT_IMPLEMENTED;
}

ErrorCode ReadSmf::load_file( const char* filename, const EntityHandle* /* file_set */, const FileOptions& opts,
                              const ReaderIface::SubsetList* subset_list, const Tag* file_id_tag )
{
    ErrorCode result;
    lineNo       = 0;
    commandNo    = 0;
    versionMajor = 0;
    versionMinor = 0;

    if( subset_list ) { MB_SET_ERR( MB_UNSUPPORTED_OPERATION, "Reading subset of files not supported for VTK" ); }

    // Does the caller want a field to be used for partitioning the entities?
    // If not, we'll assume any scalar integer field named MATERIAL_SET specifies partitions.
    std::string partition_tag_name;
    result = opts.get_option( "PARTITION", partition_tag_name );
    if( result == MB_SUCCESS ) mPartitionTagName = partition_tag_name;

    std::ifstream smfFile( filename );
    if( !smfFile ) return MB_FILE_DOES_NOT_EXIST;

    ivar.next_face   = 1;
    ivar.next_vertex = 1;
    state.push_back( SMF_State( ivar ) );

    while( smfFile.getline( line, SMF_MAXLINE, '\n' ).good() )
    {
        ++lineNo;
        result = parse_line( line );
        if( MB_SUCCESS != result ) return result;
    }

    if( !smfFile.eof() )
    {
        // Parsing terminated for a reason other than EOF: signal failure.
        return MB_FILE_WRITE_ERROR;
    }

    // At this point we have _numNodesInFile vertices and _numElementsInFile triangles
    // the coordinates are in _coords, and connectivities in _connec
    // std::vector<double> _coords; // 3*numNodes; we might not know the number of nodes
    // std::vector<int> _connec; // 3*num of elements; we might not know them;

    // Create vertices
    std::vector< double* > arrays;
    EntityHandle start_handle_out;
    start_handle_out = 0;
    result           = readMeshIface->get_node_coords( 3, _numNodesInFile, MB_START_ID, start_handle_out, arrays );

    if( MB_SUCCESS != result ) return result;

    // Fill the arrays with data from _coords
    // Cppcheck warning (false positive): variable arrays is assigned a value that is never used
    for( int i = 0; i < _numNodesInFile; i++ )
    {
        int i3       = 3 * i;
        arrays[0][i] = _coords[i3];
        arrays[1][i] = _coords[i3 + 1];
        arrays[2][i] = _coords[i3 + 2];
    }
    // Elements

    EntityHandle start_handle_elem_out;
    start_handle_elem_out = 0;
    EntityHandle* conn_array_out;
    result = readMeshIface->get_element_connect( _numElementsInFile, 3,
                                                 MBTRI,  // EntityType
                                                 MB_START_ID, start_handle_elem_out, conn_array_out );
    if( MB_SUCCESS != result ) return result;
    for( int j = 0; j < _numElementsInFile * 3; j++ )
        conn_array_out[j] = _connec[j];

    // Notify MOAB of the new elements
    result = readMeshIface->update_adjacencies( start_handle_elem_out, _numElementsInFile, 3, conn_array_out );

    if( MB_SUCCESS != result ) return result;

    if( file_id_tag )
    {
        Range nodes( start_handle_out, start_handle_out + _numNodesInFile - 1 );
        Range elems( start_handle_elem_out, start_handle_elem_out + _numElementsInFile - 1 );
        readMeshIface->assign_ids( *file_id_tag, nodes );
        readMeshIface->assign_ids( *file_id_tag, elems );
    }

    return MB_SUCCESS;
}

ErrorCode ReadSmf::annotation( char* cmd, std::vector< std::string >& argv )
{
    // Skip over the '#$' prefix
    cmd += 2;

    if( streq( cmd, "SMF" ) )
    {
        // If SMF version is specified, it must be the first
        // thing specified in the file.
        if( commandNo > 1 ) { MB_SET_ERR( MB_FILE_WRITE_ERROR, "SMF file version specified at line " << lineNo ); }

        if( 2 == sscanf( argv[0].c_str(), "%d.%d", &versionMajor, &versionMinor ) )
        {
            if( versionMajor != 1 || versionMinor != 0 )
            {
                MB_SET_ERR( MB_FILE_WRITE_ERROR,
                            "Unsupported SMF file version: " << versionMajor << "." << versionMinor );
            }
        }
        else
        {
            MB_SET_ERR( MB_FILE_WRITE_ERROR, "Invalid SMF version annotation" );
        }
    }
    else if( streq( cmd, "vertices" ) )
    {
        if( argv.size() == 1 )
            _numNodes = atoi( argv[0].c_str() );
        else
            bad_annotation( cmd );
    }
    else if( streq( cmd, "faces" ) )
    {
        if( argv.size() == 1 )
            _numFaces = atoi( argv[0].c_str() );
        else
            bad_annotation( cmd );
    }
    else if( streq( cmd, "BBox" ) )
    {
    }
    else if( streq( cmd, "BSphere" ) )
    {
    }
    else if( streq( cmd, "PXform" ) )
    {
        if( argv.size() == 16 )
        {
            // parse_mat(argv);
        }
        else
            bad_annotation( cmd );
    }
    else if( streq( cmd, "MXform" ) )
    {
        if( argv.size() == 16 )
        {
            // parse_mat(argv);
        }
        else
            bad_annotation( cmd );
    }

    return MB_SUCCESS;
}

ErrorCode ReadSmf::parse_line( char* ln )
{
    char *cmd, *s;
    std::vector< std::string > argv;
    ErrorCode err;

    while( *ln == ' ' || *ln == '\t' )
        ln++;  // Skip initial white space

    // Ignore empty lines
    if( ln[0] == '\n' || ln[0] == '\0' ) return MB_SUCCESS;

    // Ignore comments
    if( ln[0] == '#' && ln[1] != '$' ) return MB_SUCCESS;

    // First, split the line into tokens
    cmd = strtok( ln, " \t\n" );

    while( ( s = strtok( NULL, " \t\n" ) ) )
    {
        std::string stg( s );
        argv.push_back( stg );
    }

    // Figure out what command it is and execute it
    if( cmd[0] == '#' && cmd[1] == '$' )
    {
        err = annotation( cmd, argv );
        if( MB_SUCCESS != err ) return err;
    }
    else
    {
        cmd_entry* entry = &read_cmds[0];
        bool handled     = false;

        while( entry->name && !handled )
        {
            if( streq( entry->name, cmd ) )
            {
                err = ( this->*( entry->cmd ) )( argv );
                if( MB_SUCCESS != err ) return err;
                handled = true;
                ++commandNo;
            }
            else
                entry++;
        }

        if( !handled )
        {
            // If the first command was invalid, this probably
            // wasn't an Smf file. Fail silently in this case.
            // If versionMajor is set, then we saw an initial #$SMF,
            // in which case it must be a SMF file.
            if( !versionMajor && !commandNo ) return MB_FILE_WRITE_ERROR;

            // Invalid command:
            MB_SET_ERR( MB_UNSUPPORTED_OPERATION, "Illegal SMF command at line " << lineNo << ": \"" << cmd << "\"" );
        }
    }

    return MB_SUCCESS;
}

ErrorCode ReadSmf::check_length( int count, const std::vector< std::string >& argv )
{
    if( ( argv.size() < (unsigned)count ) || ( argv.size() > (unsigned)count && argv[count][0] != '#' ) )
    { MB_SET_ERR( MB_FILE_WRITE_ERROR, "Expect " << count << " arguments at line " << lineNo ); }

    return MB_SUCCESS;
}

ErrorCode ReadSmf::parse_doubles( int count, const std::vector< std::string >& argv, double results[] )
{
    ErrorCode rval = check_length( count, argv );
    if( MB_SUCCESS != rval ) return rval;

    char* endptr;
    for( int i = 0; i < count; i++ )
    {
        results[i] = strtod( argv[i].c_str(), &endptr );
        if( *endptr ) { MB_SET_ERR( MB_FILE_WRITE_ERROR, "Invalid vertex coordinates at line " << lineNo ); }
    }

    return MB_SUCCESS;
}

ErrorCode ReadSmf::vertex( std::vector< std::string >& argv )
{
    double v[3];
    ErrorCode err = parse_doubles( 3, argv, v );
    if( MB_SUCCESS != err ) return err;

    state.back().vertex( v );
    ivar.next_vertex++;
    _numNodesInFile++;
    for( int j = 0; j < 3; j++ )
        _coords.push_back( v[j] );
    // model->in_Vertex(v);
    return MB_SUCCESS;
}

ErrorCode ReadSmf::v_normal( std::vector< std::string >& /*argv*/ )
{
    return MB_SUCCESS;
}

ErrorCode ReadSmf::v_color( std::vector< std::string >& /*argv*/ )
{
    return MB_SUCCESS;
}

ErrorCode ReadSmf::f_color( std::vector< std::string >& /*argv*/ )
{
    return MB_SUCCESS;
}

ErrorCode ReadSmf::face( std::vector< std::string >& argv )
{
    ErrorCode err = check_length( 3, argv );
    if( MB_SUCCESS != err ) return err;

    int vert[3] = {};
    char* endptr;
    for( unsigned int i = 0; i < argv.size(); i++ )
    {
        vert[i] = strtol( argv[i].c_str(), &endptr, 0 );
        if( *endptr ) { MB_SET_ERR( MB_FILE_WRITE_ERROR, "Invalid face spec at line " << lineNo ); }
    }

    state.back().face( vert, ivar );
    ivar.next_face++;
    for( int j = 0; j < 3; j++ )
        _connec.push_back( vert[j] );
    _numElementsInFile++;

    return MB_SUCCESS;
}

ErrorCode ReadSmf::begin( std::vector< std::string >& /*argv*/ )
{
    state.push_back( SMF_State( ivar, &state.back() ) );

    return MB_SUCCESS;
}

ErrorCode ReadSmf::end( std::vector< std::string >& /*argv*/ )
{
    // There must always be at least one state on the stack.
    // Don't let mismatched begin/end statements cause us
    // to read from an empty vector.
    if( state.size() == 1 ) { MB_SET_ERR( MB_FILE_WRITE_ERROR, "End w/out Begin at line " << lineNo ); }

    state.pop_back();

    return MB_SUCCESS;
}

ErrorCode ReadSmf::set( std::vector< std::string >& argv )
{
    if( argv.size() < 2 || argv[0] != "vertex_coorection" ) return MB_SUCCESS;

    char* endptr;
    int val = strtol( argv[1].c_str(), &endptr, 0 );
    if( *endptr ) { MB_SET_ERR( MB_FILE_WRITE_ERROR, "Invalid value at line " << lineNo ); }

    state.back().set_vertex_correction( val );

    return MB_SUCCESS;
}

ErrorCode ReadSmf::inc( std::vector< std::string >& /*argv*/ )
{
    // std::cerr << "SMF: INC not yet implemented." << std::endl;
    return MB_SUCCESS;
}

ErrorCode ReadSmf::dec( std::vector< std::string >& )
{
    // std::cerr << "SMF: DEC not yet implemented." << std::endl;
    return MB_SUCCESS;
}

ErrorCode ReadSmf::trans( std::vector< std::string >& argv )
{
    double v3[3];
    ErrorCode err = parse_doubles( 3, argv, v3 );
    if( MB_SUCCESS != err ) return err;

    AffineXform M = AffineXform::translation( v3 );
    // Mat4 M = Mat4::trans(atof(argv(0)), atof(argv(1)), atof(argv(2)));
    state.back().mmult( M );

    return MB_SUCCESS;
}

ErrorCode ReadSmf::scale( std::vector< std::string >& argv )
{
    double v3[3];
    ErrorCode err = parse_doubles( 3, argv, v3 );
    if( MB_SUCCESS != err ) return err;

    AffineXform M = AffineXform::scale( v3 );
    // Mat4 M = Mat4::scale(atof(argv(0)), atof(argv(1)), atof(argv(2)));
    state.back().mmult( M );

    return MB_SUCCESS;
}

ErrorCode ReadSmf::rot( std::vector< std::string >& argv )
{
    ErrorCode err = check_length( 2, argv );
    if( MB_SUCCESS != err ) return err;

    double axis[3]       = { 0., 0., 0. };
    std::string axisname = argv.front();
    argv.erase( argv.begin() );
    if( axisname.size() != 1 ) { MB_SET_ERR( MB_FILE_WRITE_ERROR, "Malformed rotation command at line " << lineNo ); }
    switch( axisname[0] )
    {
        case 'x':
            axis[0] = 1.;
            break;
        case 'y':
            axis[1] = 1.;
            break;
        case 'z':
            axis[2] = 1.;
            break;
        default:
            MB_SET_ERR( MB_FILE_WRITE_ERROR, "Malformed rotation command at line " << lineNo );
    }

    double angle;
    err = parse_doubles( 1, argv, &angle );
    if( MB_SUCCESS != err ) return err;
    angle *= M_PI / 180.0;

    AffineXform M = AffineXform::rotation( angle, axis );
    state.back().mmult( M );

    return MB_SUCCESS;
}

ErrorCode ReadSmf::mmult( std::vector< std::string >& argv )
{
    AffineXform mat;
    ErrorCode rval = parse_mat( argv, mat );
    if( MB_SUCCESS != rval ) return rval;

    state.back().mmult( mat );

    return MB_SUCCESS;
}

ErrorCode ReadSmf::mload( std::vector< std::string >& argv )
{
    AffineXform mat;
    ErrorCode rval = parse_mat( argv, mat );
    if( MB_SUCCESS != rval ) return rval;

    state.back().mload( mat );

    return MB_SUCCESS;
}

}  // namespace moab