#include <iostream>
#include <sstream>
#include <ctime>
#include <cstdlib>
#include <cstdio>
#include <cstring>
#include "moab/Core.hpp"
#include "moab/IntxMesh/Intx2MeshOnSphere.hpp"
#include "moab/IntxMesh/IntxUtils.hpp"
#include "TestUtil.hpp"
#include "moab/ProgOptions.hpp"
#include <cmath>

Include dependency graph for intx_on_sphere_test.cpp:

Functions
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 25 of file intx_on_sphere_test.cpp.

References ProgOptions::addOpt(), moab::IntxAreaUtils::area_on_sphere(), moab::Interface::create_meshset(), ErrorCode, moab::Intx2Mesh::FindMaxEdges(), moab::Interface::get_number_entities_by_dimension(), moab::ParallelComm::get_pcomm(), moab::Intx2Mesh::intersect_meshes(), moab::Intx2Mesh::intersect_meshes_kdtree(), moab::Interface::load_file(), mb, MB_CHK_ERR, MB_CHK_SET_ERR, MESHSET_SET, MPI_COMM_WORLD, ProgOptions::parseCommandLine(), moab::R, rank, moab::IntxUtils::ScaleToRadius(), moab::Intx2Mesh::set_box_error(), moab::Intx2Mesh::set_error_tolerance(), moab::Intx2MeshOnSphere::set_radius_destination_mesh(), moab::Intx2MeshOnSphere::set_radius_source_mesh(), size, moab::Interface::subtract_meshset(), moab::Interface::unite_meshset(), and moab::Interface::write_file().

{

    std::string firstModel, secondModel, outputFile;

    firstModel  = TestDir + "unittest/mbcslam/lagrangeHomme.vtk";
    secondModel = TestDir + "unittest/mbcslam/eulerHomme.vtk";

    ProgOptions opts;
    opts.addOpt< std::string >( "first,t", "first mesh filename (source)", &firstModel );
    opts.addOpt< std::string >( "second,m", "second mesh filename (target)", &secondModel );
    opts.addOpt< std::string >( "outputFile,o", "output intersection file", &outputFile );

    double R      = 1.;  // input
    double epsrel = 1.e-12;
    double boxeps = 1.e-4;
    outputFile    = "intx.h5m";
    opts.addOpt< double >( "radius,R", "radius for model intx", &R );
    opts.addOpt< double >( "epsilon,e", "relative error in intx", &epsrel );
    opts.addOpt< double >( "boxerror,b", "relative error for box boundaries", &boxeps );

    int output_fraction  = 0;
    int write_files_rank = 0;
    int brute_force      = 0;

    opts.addOpt< int >( "outputFraction,f", "output fraction of areas", &output_fraction );
    opts.addOpt< int >( "writeFiles,w", "write files of interest", &write_files_rank );
    opts.addOpt< int >( "kdtreeOption,k", "use kd tree for intersection", &brute_force );

    opts.parseCommandLine( argc, argv );
    int rank = 0, size = 1;
#ifdef MOAB_HAVE_MPI
    MPI_Init( &argc, &argv );
    MPI_Comm_rank( MPI_COMM_WORLD, &rank );
    MPI_Comm_size( MPI_COMM_WORLD, &size );
#endif

    // check command line arg second grid is red, arrival, first mesh is blue, departure
    // will will keep the
    std::string optsRead = ( size == 1 ? ""
                                       : std::string( "PARALLEL=READ_PART;PARTITION=PARALLEL_PARTITION" ) +
                                             std::string( ";PARALLEL_RESOLVE_SHARED_ENTS" ) );

    // read meshes in 2 file sets
    ErrorCode rval;
    Core moab;
    Interface* mb = &moab;  // global
    EntityHandle sf1, sf2, outputSet;

    // create meshsets and load files

    rval = mb->create_meshset( MESHSET_SET, sf1 );MB_CHK_ERR( rval );
    rval = mb->create_meshset( MESHSET_SET, sf2 );MB_CHK_ERR( rval );
    if( 0 == rank ) std::cout << "Loading mesh file " << firstModel << "\n";
    rval = mb->load_file( firstModel.c_str(), &sf1, optsRead.c_str() );MB_CHK_ERR( rval );
    if( 0 == rank ) std::cout << "Loading mesh file " << secondModel << "\n";
    rval = mb->load_file( secondModel.c_str(), &sf2, optsRead.c_str() );MB_CHK_ERR( rval );

    if( 0 == rank )
    {
        std::cout << "Radius:  " << R << "\n";
        std::cout << "relative eps:  " << epsrel << "\n";
        std::cout << "box eps:  " << boxeps << "\n";
        std::cout << " use kd tree for intersection: " << brute_force << "\n";
    }
    rval = mb->create_meshset( MESHSET_SET, outputSet );MB_CHK_ERR( rval );

    // fix radius of both meshes, to be consistent with input R
    rval = moab::IntxUtils::ScaleToRadius( mb, sf1, R );MB_CHK_ERR( rval );
    rval = moab::IntxUtils::ScaleToRadius( mb, sf2, R );MB_CHK_ERR( rval );

#if 0
  // std::cout << "Fix orientation etc ..\n";
  //IntxUtils; those calls do nothing for a good mesh
  rval = fix_degenerate_quads(mb, sf1);MB_CHK_ERR(rval);
  rval = fix_degenerate_quads(mb, sf2);MB_CHK_ERR(rval);

  rval = positive_orientation(mb, sf1, R);MB_CHK_ERR(rval);
  rval = positive_orientation(mb, sf2, R);MB_CHK_ERR(rval);
#endif

#ifdef MOAB_HAVE_MPI
    ParallelComm* pcomm = ParallelComm::get_pcomm( mb, 0 );
#endif
    Intx2MeshOnSphere worker( mb );
    IntxAreaUtils areaAdaptor;

    worker.set_error_tolerance( R * epsrel );
    worker.set_box_error( boxeps );
#ifdef MOAB_HAVE_MPI
    worker.set_parallel_comm( pcomm );
#endif
    // worker.SetEntityType(moab::MBQUAD);
    worker.set_radius_source_mesh( R );
    worker.set_radius_destination_mesh( R );
    // worker.enable_debug();

    rval = worker.FindMaxEdges( sf1, sf2 );MB_CHK_ERR( rval );

    EntityHandle covering_set;
#ifdef MOAB_HAVE_MPI
    if( size > 1 )
    {
        Range local_verts;
        rval = worker.build_processor_euler_boxes( sf2, local_verts );MB_CHK_ERR( rval );  // output also the local_verts
        if( write_files_rank )
        {
            std::stringstream outf;
            outf << "second_mesh" << rank << ".h5m";
            rval = mb->write_file( outf.str().c_str(), 0, 0, &sf2, 1 );MB_CHK_ERR( rval );
        }
    }
    if( size > 1 )
    {
        double elapsed = MPI_Wtime();
        rval           = mb->create_meshset( moab::MESHSET_SET, covering_set );MB_CHK_SET_ERR( rval, "Can't create new set" );
        rval = worker.construct_covering_set( sf1, covering_set );MB_CHK_ERR( rval );  // lots of communication if mesh is distributed very differently
        elapsed = MPI_Wtime() - elapsed;
        if( 0 == rank ) std::cout << "\nTime to communicate the mesh = " << elapsed << std::endl;
        // area fraction of the covering set that needed to be communicated from other processors
        // number of elements in the covering set communicated, compared to total number of elements
        // in the covering set
        if( output_fraction )
        {
            EntityHandle comm_set;  // set with elements communicated from other tasks
            rval = mb->create_meshset( MESHSET_SET, comm_set );MB_CHK_ERR( rval );
            // see how much more different is compared to sf1
            rval = mb->unite_meshset( comm_set, covering_set );MB_CHK_ERR( rval );  // will have to subtract from covering set, initial set
            // subtract
            rval = mb->subtract_meshset( comm_set, sf1 );MB_CHK_ERR( rval );
            // compute fractions
            double area_cov_set = areaAdaptor.area_on_sphere( mb, covering_set, R );
            assert( area_cov_set > 0 );
            double comm_area = areaAdaptor.area_on_sphere( mb, comm_set, R );
            // more important is actually the number of elements communicated
            int num_cov_cells, num_comm_cells;
            rval = mb->get_number_entities_by_dimension( covering_set, 2, num_cov_cells );MB_CHK_ERR( rval );
            rval = mb->get_number_entities_by_dimension( comm_set, 2, num_comm_cells );MB_CHK_ERR( rval );
            double fraction_area = comm_area / area_cov_set;
            double fraction_num_cells =
                (double)num_comm_cells / num_cov_cells;  // determine min, max, average of these fractions

            double max_fraction_area, max_fraction_num_cells, min_fraction_area, min_fraction_num_cells;
            double average_fraction_area, average_fraction_num_cells;
            MPI_Reduce( &fraction_area, &max_fraction_area, 1, MPI_DOUBLE, MPI_MAX, 0, MPI_COMM_WORLD );
            MPI_Reduce( &fraction_num_cells, &max_fraction_num_cells, 1, MPI_DOUBLE, MPI_MAX, 0, MPI_COMM_WORLD );
            MPI_Reduce( &fraction_area, &min_fraction_area, 1, MPI_DOUBLE, MPI_MIN, 0, MPI_COMM_WORLD );
            MPI_Reduce( &fraction_num_cells, &min_fraction_num_cells, 1, MPI_DOUBLE, MPI_MIN, 0, MPI_COMM_WORLD );
            MPI_Reduce( &fraction_area, &average_fraction_area, 1, MPI_DOUBLE, MPI_SUM, 0, MPI_COMM_WORLD );
            MPI_Reduce( &fraction_num_cells, &average_fraction_num_cells, 1, MPI_DOUBLE, MPI_SUM, 0, MPI_COMM_WORLD );
            average_fraction_area /= size;
            average_fraction_num_cells /= size;
            if( rank == 0 )
            {
                std::cout << " fraction area:      min: " << min_fraction_area << " max: " << max_fraction_area
                          << " average :" << average_fraction_area << " \n";
                std::cout << " fraction num cells: min: " << min_fraction_num_cells
                          << " max: " << max_fraction_num_cells << " average: " << average_fraction_num_cells << " \n";
            }
        }
        if( write_files_rank )
        {
            std::stringstream cof;
            cof << "covering_mesh" << rank << ".h5m";
            rval = mb->write_file( cof.str().c_str(), 0, 0, &covering_set, 1 );MB_CHK_ERR( rval );
        }
    }
    else
#endif
        covering_set = sf1;

    if( 0 == rank ) std::cout << "Computing intersections ..\n";
#ifdef MOAB_HAVE_MPI
    double elapsed = MPI_Wtime();
#endif
    if( brute_force )
    {
        rval = worker.intersect_meshes_kdtree( covering_set, sf2, outputSet );MB_CHK_SET_ERR( rval, "failed to intersect meshes with slow method" );
    }
    else
    {
        rval = worker.intersect_meshes( covering_set, sf2, outputSet );MB_CHK_SET_ERR( rval, "failed to intersect meshes" );
    }
#ifdef MOAB_HAVE_MPI
    elapsed = MPI_Wtime() - elapsed;
    if( 0 == rank ) std::cout << "\nTime to compute the intersection between meshes = " << elapsed << std::endl;
#endif
    // the output set does not have the intx vertices on the boundary shared, so they will be
    // duplicated right now we write this file just for checking it looks OK

    // compute total area with 2 methods
    // double initial_area = areaAdaptor.area_on_sphere_lHuiller(mb, sf1, R);
    // double area_method1 = areaAdaptor.area_on_sphere_lHuiller(mb, outputSet, R);
    // double area_method2 = areaAdaptor.area_on_sphere(mb, outputSet, R);

    // std::cout << "initial area: " << initial_area << "\n";
    // std::cout<< " area with l'Huiller: " << area_method1 << " with Girard: " << area_method2<<
    // "\n"; std::cout << " relative difference areas " <<
    // fabs(area_method1-area_method2)/area_method1 << "\n"; std::cout << " relative error " <<
    // fabs(area_method1-initial_area)/area_method1 << "\n";

    if( write_files_rank )
    {
        std::stringstream outf;
        outf << "intersect" << rank << ".h5m";
        rval = mb->write_file( outf.str().c_str(), 0, 0, &outputSet, 1 );
    }
    double intx_area    = areaAdaptor.area_on_sphere( mb, outputSet, R );
    double arrival_area = areaAdaptor.area_on_sphere( mb, sf2, R );
    std::cout << "On rank : " << rank << " arrival area: " << arrival_area << "  intersection area:" << intx_area
              << " rel error: " << fabs( ( intx_area - arrival_area ) / arrival_area ) << "\n";

#ifdef MOAB_HAVE_MPI
#ifdef MOAB_HAVE_HDF5_PARALLEL
    rval = mb->write_file( outputFile.c_str(), 0, "PARALLEL=WRITE_PART", &outputSet, 1 );MB_CHK_SET_ERR( rval, "failed to write intx file" );
#else
    // write intx set on rank 0, in serial; we cannot write in parallel
    if( 0 == rank )
    {
        rval = mb->write_file( outputFile.c_str(), 0, 0, &outputSet, 1 );MB_CHK_SET_ERR( rval, "failed to write intx file" );
    }
#endif
    MPI_Finalize();
#else
    rval = mb->write_file( outputFile.c_str(), 0, 0, &outputSet, 1 );MB_CHK_SET_ERR( rval, "failed to write intx file" );
#endif
    return 0;
}

Functions

Function Documentation