MOAB: Mesh Oriented datABase  (version 5.2.1)
mbparallelcomm_test.cpp File Reference
#include "moab/ParallelComm.hpp"
#include "MBParallelConventions.h"
#include "MBTagConventions.hpp"
#include "moab/Core.hpp"
#include "ScdVertexData.hpp"
#include "StructuredElementSeq.hpp"
#include "SequenceManager.hpp"
#include "moab/Error.hpp"
#include "moab_mpi.h"
#include <iostream>
#include <sstream>
#include <cassert>
+ Include dependency graph for mbparallelcomm_test.cpp:

Go to the source code of this file.

Defines

#define REALTFI   1
#define ERROR(a, b)
#define PRINT_LAST_ERROR
#define RRA(a)
#define PRINTSETS(a, b, c, p)

Functions

ErrorCode create_linear_mesh (Interface *mbImpl, int N, int M, int &nshared)
ErrorCode create_scd_mesh (Interface *mbImpl, int IJK, int &nshared)
ErrorCode read_file (Interface *mbImpl, std::vector< std::string > &filenames, const char *tag_name, int tag_val, int distrib, int parallel_option, int resolve_shared, int with_ghosts, int use_mpio, bool print_parallel)
ErrorCode test_packing (Interface *mbImpl, const char *filename)
ErrorCode report_nsets (Interface *mbImpl)
ErrorCode report_iface_ents (Interface *mbImpl, std::vector< ParallelComm * > &pcs)
void print_usage (const char *)
int main (int argc, char **argv)

Variables

const bool debug = false

Define Documentation

#define ERROR (   a,
  b 
)
Value:
{                                \
        std::cerr << (a) << std::endl; \
        return b;                    \
    }

Definition at line 28 of file mbparallelcomm_test.cpp.

Value:
{                                                  \
        std::string last_error;                        \
        result = mbImpl->get_last_error( last_error ); \
        if( last_error.empty() )                       \
            std::cerr << "(none)" << std::endl;        \
        else                                           \
            std::cerr << last_error << std::endl;      \
    }

Definition at line 34 of file mbparallelcomm_test.cpp.

Referenced by main(), read_file(), and test_packing().

#define PRINTSETS (   a,
  b,
  c,
 
)
Value:
if( a )                                                                                             \
    {                                                                                                   \
        result = mbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &(a), p, 1, b );                   \
        if( !(b).empty() )                                                                                \
        {                                                                                               \
            std::vector< int > ids( (b).size() );                                                         \
            result = mbImpl->tag_get_data( gidtag, b, &ids[0] );                                        \
            if( MB_SUCCESS == result )                                                                  \
            {                                                                                           \
                std::cout << "Proc " << rank << ": " << (c) << " (total " << (b).size() << "): " << ids[0]; \
                for( unsigned int i = 1; i < (b).size(); i++ )                                            \
                    std::cout << ", " << ids[i];                                                        \
                std::cout << std::endl;                                                                 \
            }                                                                                           \
        }                                                                                               \
    }

Referenced by report_nsets().

#define REALTFI   1

test of ParallelComm functionality

To run:

mpirun -np <#procs> mbparallelcomm_test

Definition at line 22 of file mbparallelcomm_test.cpp.

#define RRA (   a)
Value:
if( MB_SUCCESS != result ) \
    {                          \
        std::cerr << (a);        \
        return result;         \
    }

Definition at line 43 of file mbparallelcomm_test.cpp.

Referenced by read_file(), and test_packing().


Function Documentation

ErrorCode create_linear_mesh ( Interface *  mbImpl,
int  N,
int  M,
int &  nshared 
)
ErrorCode create_scd_mesh ( Interface *  mbImpl,
int  IJK,
int &  nshared 
)
int main ( int  argc,
char **  argv 
)

Definition at line 66 of file mbparallelcomm_test.cpp.

References MB_FAILURE, MB_SUCCESS, MPI_COMM_WORLD, PRINT_LAST_ERROR, print_usage(), rank, read_file(), and test_packing().

{
    // need to init MPI first, to tell how many procs and rank
    MPI_Init( &argc, &argv );

    int nprocs, rank;
    MPI_Comm_size( MPI_COMM_WORLD, &nprocs );
    MPI_Comm_rank( MPI_COMM_WORLD, &rank );

    // start time
    double stime = 0, rtime = 0, dtime = 0, ltime = 0;
    if( 0 == rank ) stime = MPI_Wtime();

    // create MOAB instance based on that
    Interface* mbImpl = new Core;
    if( NULL == mbImpl ) return 1;

    ErrorCode result = MB_SUCCESS;

    // each interior proc has a vector of N+M vertices, sharing
    // M vertices each with lower- and upper-rank processors, except
    // procs on the end

    // get N, M from command line
    if( argc < 3 )
    {
        if( 0 == rank ) print_usage( argv[0] );
        MPI_Finalize();
        return 1;
    }

    int npos = 1, tag_val, distrib, with_ghosts = 1, resolve_shared = 1, use_mpio = 0;
    bool print_parallel = false;
    const char* tag_name;
    std::vector< std::string > filenames;
    int parallel_option = 0;
    int num_files;

    if( !strcmp( argv[npos], "-p" ) ) print_parallel = true;

    while( npos != argc )
    {
        ErrorCode tmp_result;
        int this_opt = strtol( argv[npos++], NULL, 0 );
        switch( this_opt )
        {
            case 0:
            case -1:
            case -2:
            case -3:
                parallel_option = this_opt;
                continue;

            case 3:
                // read a file in parallel from the filename on the command line
                tag_name  = "MATERIAL_SET";
                tag_val   = -1;
                num_files = strtol( argv[npos++], NULL, 0 );
                if( 0 == num_files )
                {
                    if( 0 == rank ) print_usage( argv[0] );
                    MPI_Finalize();
                    return 1;
                }
                while( num_files-- && npos < argc )
                    filenames.push_back( std::string( argv[npos++] ) );
                if( npos < argc ) tag_name = argv[npos++];
                if( npos < argc ) tag_val = strtol( argv[npos++], NULL, 0 );
                if( npos < argc )
                    distrib = strtol( argv[npos++], NULL, 0 );
                else
                    distrib = 1;
                if( npos < argc ) resolve_shared = strtol( argv[npos++], NULL, 0 );
                if( npos < argc ) with_ghosts = strtol( argv[npos++], NULL, 0 );
                if( npos < argc ) use_mpio = strtol( argv[npos++], NULL, 0 );

                tmp_result = read_file( mbImpl, filenames, tag_name, tag_val, distrib, parallel_option, resolve_shared,
                                        with_ghosts, use_mpio, print_parallel );
                if( MB_SUCCESS != tmp_result )
                {
                    result = tmp_result;
                    std::cerr << "Couldn't read mesh; error message:" << std::endl;
                    PRINT_LAST_ERROR;
                    MPI_Abort( MPI_COMM_WORLD, result );
                }
                break;

            case 4:
                filenames.push_back( argv[npos++] );
                tmp_result = test_packing( mbImpl, filenames[0].c_str() );
                if( MB_SUCCESS != tmp_result )
                {
                    result = tmp_result;
                    std::cerr << "Packing test failed; error message:" << std::endl;
                    PRINT_LAST_ERROR
                }
                break;

            case 5:
                // read a file in parallel from the filename on the command line
                tag_name       = "MATERIAL_SET";
                distrib        = 1;
                tag_val        = -1;
                with_ghosts    = 0;
                resolve_shared = 1;
                while( npos < argc )
                    filenames.push_back( std::string( argv[npos++] ) );
                tmp_result = read_file( mbImpl, filenames, tag_name, tag_val, distrib, parallel_option, resolve_shared,
                                        with_ghosts, use_mpio, print_parallel );
                if( MB_SUCCESS != tmp_result )
                {
                    result = tmp_result;
                    std::cerr << "Couldn't read mesh; error message:" << std::endl;
                    PRINT_LAST_ERROR;
                    MPI_Abort( MPI_COMM_WORLD, result );
                }
                break;

            default:
                std::cerr << "Unrecognized option \"" << this_opt << "\"; skipping." << std::endl;
                tmp_result = MB_FAILURE;
        }

        if( 0 == rank ) rtime = MPI_Wtime();
    }

    if( 0 == rank ) dtime = MPI_Wtime();

    result = mbImpl->delete_mesh();
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't delete mesh on rank " << rank << "; error message: " << std::endl;
        PRINT_LAST_ERROR;
    }
    if( 0 == rank ) ltime = MPI_Wtime();

    if( MB_SUCCESS == result ) std::cerr << "Proc " << rank << ": Success." << std::endl;

    if( 0 == rank )
        std::cout << "Times: " << dtime - stime << " " << rtime - stime << " " << ltime - dtime
                  << " (total/read/delete)" << std::endl;

    MPI_Finalize();

    delete mbImpl;

    return ( MB_SUCCESS == result ? 0 : 1 );
}
void print_usage ( const char *  command)

Definition at line 215 of file mbparallelcomm_test.cpp.

{
    std::cerr << "Usage: " << command << " [readpar_option] <opt> <input> [...] where:" << std::endl
              << " readpar_option = 0 (BCAST_DELETE) (default), -1 (READ_DELETE), " << std::endl
              << "                 -2 (READ_PARALLEL), -3 (BCAST)" << std::endl
              << "opt   input" << std::endl
              << "===   =====" << std::endl
              << " 1     <linear_ints> <shared_verts> " << std::endl
              << " 2     <n_ints> " << std::endl
              << " 3*    <# files> <file_names...> [<tag_name>=\"MATERIAL_SET\" [tag_val] "
                 "[distribute=1] [resolve_shared=1] [with_ghosts=1] [use_mpio=0]"
              << std::endl
              << " 4    <file_name> " << std::endl
              << "*Note: if opt 3 is used, it must be the last one." << std::endl;
}
ErrorCode read_file ( Interface *  mbImpl,
std::vector< std::string > &  filenames,
const char *  tag_name,
int  tag_val,
int  distrib,
int  parallel_option,
int  resolve_shared,
int  with_ghosts,
int  use_mpio,
bool  print_parallel 
)

Definition at line 324 of file mbparallelcomm_test.cpp.

References moab::ParallelComm::get_pcomm(), MB_FAILURE, MB_SUCCESS, MPI_COMM_WORLD, PRINT_LAST_ERROR, report_iface_ents(), and RRA.

{
    std::ostringstream options;
    switch( parallel_option )
    {
        case 0:
            options << "PARALLEL=BCAST_DELETE;PARTITION=" << tag_name;
            break;
        case -1:
            options << "PARALLEL=READ_DELETE;PARTITION=" << tag_name;
            break;
        case -2:
            options << "PARALLEL=READ_PART;PARTITION=" << tag_name;
            break;
        case -3:
            options << "PARALLEL=BCAST;PARTITION=" << tag_name;
            break;
        default:
            return MB_FAILURE;
    }

    if( -1 != tag_val ) options << ";PARTITION_VAL=" << tag_val;

    if( 1 == distrib ) options << ";PARTITION_DISTRIBUTE";

    if( 1 == resolve_shared ) options << ";PARALLEL_RESOLVE_SHARED_ENTS";

    if( 1 == with_ghosts ) options << ";PARALLEL_GHOSTS=3.0.1";

    if( 1 == use_mpio ) options << ";USE_MPIO";

    options << ";CPUTIME";

    if( print_parallel ) options << ";PRINT_PARALLEL";

    std::vector< ParallelComm* > pcs( filenames.size() );
    ErrorCode result = MB_FAILURE;

    if( 1 < filenames.size() )
    {
        for( unsigned int i = 0; i < filenames.size(); i++ )
        {
            pcs[i]    = new ParallelComm( mbImpl, MPI_COMM_WORLD );
            int index = pcs[i]->get_id();
            std::ostringstream newopts;
            newopts << options.str();
            newopts << ";PARALLEL_COMM=" << index;
            result = mbImpl->load_file( filenames[i].c_str(), 0, newopts.str().c_str() );

            if( MB_SUCCESS != result ) PRINT_LAST_ERROR;

            if( MB_SUCCESS != result )
            {
                MPI_Abort( MPI_COMM_WORLD, result );
                break;
            }

            // exchange tag
            Range tmp_range;
            result = pcs[i]->exchange_tags( "GLOBAL_ID", tmp_range );
            if( MB_SUCCESS != result )
            {
                std::cerr << "Tag exchange didn't work." << std::endl;
                break;
            }
        }
    }
    else
    {
        result = mbImpl->load_file( filenames[0].c_str(), 0, options.str().c_str() );
        RRA( "Failed to load file." );
        pcs[0] = ParallelComm::get_pcomm( mbImpl, 0 );
        assert( pcs[0] );
    }

    if( MB_SUCCESS == result ) report_iface_ents( mbImpl, pcs );

    return result;
}
ErrorCode report_iface_ents ( Interface *  mbImpl,
std::vector< ParallelComm * > &  pcs 
)

Definition at line 447 of file mbparallelcomm_test.cpp.

References MB_FAILURE, MB_SUCCESS, moab::Range::merge(), MPI_COMM_WORLD, PSTATUS_NOT_OWNED, rank, size, moab::Range::size(), and smoab::UNION.

Referenced by read_file().

{
    Range iface_ents[6];
    ErrorCode result = MB_SUCCESS, tmp_result;

    // now figure out which vertices are shared
    Range part_ents, part_verts;
    for( unsigned int p = 0; p < pcs.size(); p++ )
    {
        // get entities owned by this partition
        for( Range::iterator rit = pcs[p]->partition_sets().begin(); rit != pcs[p]->partition_sets().end(); ++rit )
        {
            tmp_result = mbImpl->get_entities_by_dimension( *rit, 3, part_ents, true );
            if( MB_SUCCESS != tmp_result ) result = tmp_result;
        }

        for( int i = 0; i < 4; i++ )
        {
            tmp_result = pcs[p]->get_iface_entities( -1, i, iface_ents[i] );

            if( MB_SUCCESS != tmp_result )
            {
                std::cerr << "get_iface_entities returned error on proc " << pcs[p]->proc_config().proc_rank()
                          << "; message: " << std::endl;
                std::string last_error;
                result = mbImpl->get_last_error( last_error );
                if( last_error.empty() )
                    std::cerr << "(none)" << std::endl;
                else
                    std::cerr << last_error << std::endl;
                result = tmp_result;
            }
            if( 0 != i ) iface_ents[4].merge( iface_ents[i] );
        }
    }

    // get non-owned vertices
    result = pcs[0]->get_pstatus_entities( 0, PSTATUS_NOT_OWNED, part_verts );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't get non-owned entities." << std::endl;
        return result;
    }
    int tot_verts;
    result = mbImpl->get_number_entities_by_dimension( 0, 0, tot_verts );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't get number of vertices." << std::endl;
        return result;
    }
    tot_verts -= part_verts.size();

    // report # iface entities
    result = mbImpl->get_adjacencies( iface_ents[4], 0, false, iface_ents[5], Interface::UNION );

    int rank;
    MPI_Comm_rank( MPI_COMM_WORLD, &rank );

    std::cerr << "Proc " << rank << " iface entities: " << std::endl;
    for( int i = 0; i < 4; i++ )
        std::cerr << "    " << iface_ents[i].size() << " " << i << "d iface entities." << std::endl;
    std::cerr << "    (" << iface_ents[5].size() << " verts adj to other iface ents)" << std::endl;
    if( iface_ents[0].size() != iface_ents[5].size() )
        std::cerr << "WARNING: number of interface vertices don't agree with "
                  << "vertex adjacencies on interface entities." << std::endl;

    // report # regions owned by this proc
    std::cout << "Proc " << rank << " owns " << part_ents.size() << " 3d entities." << std::endl;

    // get total # regions over all procs
    int num_local[2], num_total[2];
    num_local[0] = tot_verts;
    num_local[1] = part_ents.size();

    int failure = MPI_Reduce( num_local, num_total, 2, MPI_INT, MPI_SUM, 0, MPI_COMM_WORLD );
    if( failure ) result = MB_FAILURE;

    if( 0 == rank )
    {
        std::cout << "Total # owned vertices = " << num_total[0] << std::endl;
        std::cout << "Total # owned regions = " << num_total[1] << std::endl;
    }

    return result;
}
ErrorCode report_nsets ( Interface *  mbImpl)

Definition at line 231 of file mbparallelcomm_test.cpp.

References moab::Range::clear(), moab::debug, MB_SUCCESS, MB_TYPE_INTEGER, MBENTITYSET, MPI_COMM_WORLD, moab::Range::print(), PRINTSETS, rank, and moab::Range::size().

{
    // get and report various numbers...
    int rank;
    MPI_Comm_rank( MPI_COMM_WORLD, &rank );

    Range matsets, geomsets, parsets;
    int nsets;
    Tag mtag = 0, gtag = 0, ptag = 0, gidtag;
    ErrorCode result = mbImpl->tag_get_handle( "MATERIAL_SET", 1, MB_TYPE_INTEGER, mtag );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't get MATERIAL_SET tag." << std::endl;
        return result;
    }
    result = mbImpl->tag_get_handle( "GEOM_DIMENSION", 1, MB_TYPE_INTEGER, gtag );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't get MATERIAL_SET tag." << std::endl;
        return result;
    }
    result = mbImpl->tag_get_handle( "PARALLEL_PARTITION", 1, MB_TYPE_INTEGER, ptag );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't PARALLEL_PARTITION tag." << std::endl;
        return result;
    }
    result = mbImpl->tag_get_handle( "GLOBAL_ID", 1, MB_TYPE_INTEGER, gidtag );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't get GLOBAL_ID tag." << std::endl;
        return result;
    }
    result = mbImpl->get_number_entities_by_type( 0, MBENTITYSET, nsets );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Couldn't get number entities by type." << std::endl;
        return result;
    }
    std::cout << "Proc " << rank << ": Total of " << nsets << " entity sets." << std::endl;

#define PRINTSETS( a, b, c, p )                                                                         \
    if( a )                                                                                             \
    {                                                                                                   \
        result = mbImpl->get_entities_by_type_and_tag( 0, MBENTITYSET, &(a), p, 1, b );                   \
        if( !(b).empty() )                                                                                \
        {                                                                                               \
            std::vector< int > ids( (b).size() );                                                         \
            result = mbImpl->tag_get_data( gidtag, b, &ids[0] );                                        \
            if( MB_SUCCESS == result )                                                                  \
            {                                                                                           \
                std::cout << "Proc " << rank << ": " << (c) << " (total " << (b).size() << "): " << ids[0]; \
                for( unsigned int i = 1; i < (b).size(); i++ )                                            \
                    std::cout << ", " << ids[i];                                                        \
                std::cout << std::endl;                                                                 \
            }                                                                                           \
        }                                                                                               \
    }

    PRINTSETS( mtag, matsets, "material sets", NULL );

    int tval   = 3;
    void* pval = &tval;

    PRINTSETS( gtag, geomsets, "geom sets (vols)", &pval );
    tval = 2;
    geomsets.clear();
    PRINTSETS( gtag, geomsets, "geom sets (surfs)", &pval );
    tval = 1;
    geomsets.clear();
    PRINTSETS( gtag, geomsets, "geom sets (curves)", &pval );
    tval = 0;
    geomsets.clear();
    PRINTSETS( gtag, geomsets, "geom sets (verts)", &pval );

    PRINTSETS( ptag, parsets, "partition sets", NULL );

    if( debug )
    {
        // list info on all ent sets, reuse parsets
        parsets.clear();
        result = mbImpl->get_entities_by_type( 0, MBENTITYSET, parsets );
        if( MB_SUCCESS == result )
        {
            std::cout << "Total sets (by range): " << parsets.size() << "; sets: " << std::endl;
            parsets.print( "  " );
            mbImpl->list_entities( parsets );
        }
    }

    return MB_SUCCESS;
}
ErrorCode test_packing ( Interface *  mbImpl,
const char *  filename 
)

Definition at line 406 of file mbparallelcomm_test.cpp.

References moab::ParallelComm::Buffer::buff_ptr, moab::Range::insert(), MB_SUCCESS, MESHSET_SET, MPI_COMM_WORLD, moab::ParallelComm::pack_buffer(), PRINT_LAST_ERROR, moab::ParallelComm::Buffer::reset_ptr(), RRA, and moab::ParallelComm::unpack_buffer().

Referenced by main().

{
    // read the mesh
    EntityHandle file_set;
    ErrorCode result = mbImpl->create_meshset( MESHSET_SET, file_set );
    RRA( "create_meshset failed." );

    result = mbImpl->load_file( filename, &file_set, NULL );
    if( MB_SUCCESS != result )
    {
        std::cerr << "Reading file failed; message:" << std::endl;
        PRINT_LAST_ERROR;
        return result;
    }

    // get 3d entities and pack a buffer with them
    Range ents, whole_range;
    std::vector< EntityHandle > new_ents;
    result = mbImpl->get_entities_by_handle( file_set, ents );
    RRA( "Getting 3d ents failed." );

    ents.insert( file_set );

    ParallelComm* pcomm = new ParallelComm( mbImpl, MPI_COMM_WORLD );

    ParallelComm::Buffer buff;
    result = pcomm->pack_buffer( ents, false, true, false, -1, &buff );
    RRA( "Packing buffer count (non-stored handles) failed." );

    std::vector< std::vector< EntityHandle > > L1hloc, L1hrem;
    std::vector< std::vector< int > > L1p;
    std::vector< EntityHandle > L2hloc, L2hrem;
    std::vector< unsigned int > L2p;

    buff.reset_ptr();
    result = pcomm->unpack_buffer( buff.buff_ptr, false, -1, -1, L1hloc, L1hrem, L1p, L2hloc, L2hrem, L2p, new_ents );
    RRA( "Unpacking buffer (non-stored handles) failed." );

    return MB_SUCCESS;
}

Variable Documentation

const bool debug = false

Definition at line 24 of file mbparallelcomm_test.cpp.

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