elem_eval_test.cpp

Go to the documentation of this file.

/**
 * \file elem_eval_test.cpp
 *
 * \brief test ElemEvaluator and the various element types in MOAB
 *
 */
#include "moab/Core.hpp"
#include "moab/ReadUtilIface.hpp"
#include "moab/ElemEvaluator.hpp"
#include "moab/LocalDiscretization/LinearTri.hpp"
#include "moab/LocalDiscretization/LinearQuad.hpp"
#include "moab/LocalDiscretization/LinearHex.hpp"
#include "moab/LocalDiscretization/LinearTet.hpp"
#include "moab/LocalDiscretization/QuadraticHex.hpp"
#include "moab/CartVect.hpp"
#include "TestUtil.hpp"

using namespace moab;

void test_linear_tri();
void test_linear_quad();
void test_linear_hex();
void test_linear_tet();
void test_quadratic_hex();
void test_normal_linear_tri();
void test_normal_linear_quad();
void test_normal_linear_tet();
void test_normal_linear_hex();
ErrorCode create_mesh( Core& mb, EntityType type );

CartVect hex_verts[] = {
    // corners
    CartVect( -1, -1, -1 ), CartVect( 1, -1, -1 ), CartVect( 1, 1, -1 ), CartVect( -1, 1, -1 ), CartVect( -1, -1, 1 ),
    CartVect( 1, -1, 1 ), CartVect( 1, 1, 1 ), CartVect( -1, 1, 1 ),
    // mid-edge (bottom, middle, top)
    CartVect( 0, -1, -1 ), CartVect( 1, 0, -1 ), CartVect( 0, 1, -1 ), CartVect( -1, 0, -1 ), CartVect( -1, -1, 0 ),
    CartVect( 1, -1, 0 ), CartVect( 1, 1, 0 ), CartVect( -1, 1, 0 ), CartVect( 0, -1, 1 ), CartVect( 1, 0, 1 ),
    CartVect( 0, 1, 1 ), CartVect( -1, 0, 1 ),
    // mid-face (middle, bottom, top)
    CartVect( 0, -1, 0 ), CartVect( 1, 0, 0 ), CartVect( 0, 1, 0 ), CartVect( -1, 0, 0 ), CartVect( 0, 0, -1 ),
    CartVect( 0, 0, 1 ),
    // mid-element
    CartVect( 0, 0, 0 ) };

const double EPS1 = 1.0e-6;

void test_eval( ElemEvaluator& ee, bool test_integrate )
{

    CartVect params, posn, params2;
    int is_inside;
    Matrix3 jacob;
    ErrorCode rval;
    int ent_dim = ee.get_moab()->dimension_from_handle( ee.get_ent_handle() );

    for( params[0] = -1; params[0] <= 1; params[0] += 0.2 )
    {
        for( params[1] = -1; params[1] <= 1; params[1] += 0.2 )
        {
            for( params[2] = -1; params[2] <= 1; params[2] += 0.2 )
            {

                // forward/reverse evaluation should get back to the same point, within tol
                if( !ee.inside( params.array(), EPS1 ) ) continue;

                rval = ee.eval( params.array(), posn.array() );CHECK_ERR( rval );
                rval = ee.reverse_eval( posn.array(), EPS1, EPS1, params2.array(), &is_inside );CHECK_ERR( rval );
                CHECK_REAL_EQUAL( 0.0, params[0] - params2[0], 3 * EPS1 );
                if( ent_dim > 1 ) CHECK_REAL_EQUAL( 0.0, params[1] - params2[1], 3 * EPS1 );
                if( ent_dim > 2 ) CHECK_REAL_EQUAL( 0.0, params[2] - params2[2], 3 * EPS1 );

                // jacobian should be >= 0
                rval = ee.jacobian( params.array(), jacob.array() );CHECK_ERR( rval );
                CHECK( jacob.determinant() >= 0.0 );
            }
        }
    }

    if( !test_integrate ) return;

    // tag equal to coordinates should integrate to avg position, test that
    Tag tag;
    // make a temporary tag and set it on vertices to the vertex positions
    rval = ee.get_moab()->tag_get_handle( NULL, 3, MB_TYPE_DOUBLE, tag, MB_TAG_DENSE | MB_TAG_CREAT );CHECK_ERR( rval );
    rval = ee.get_moab()->tag_set_data( tag, ee.get_vert_handles(), ee.get_num_verts(), ee.get_vert_pos() );CHECK_ERR( rval );
    // set that temporary tag on the evaluator so that's what gets integrated
    rval = ee.set_tag_handle( tag, 0 );CHECK_ERR( rval );

    CartVect integral, avg;
    rval = ee.integrate( integral.array() );CHECK_ERR( rval );

    // now integrate a const 1-valued function, using direct call to the integrate function
    std::vector< double > one( ee.get_num_verts(), 1.0 );
    double measure;
    EvalSet es;
    EntityHandle eh = ee.get_ent_handle();
    rval            = EvalSet::get_eval_set( ee.get_moab(), eh, es );CHECK_ERR( rval );
    rval = ( *es.integrateFcn )( &one[0], ee.get_vert_pos(), ee.get_num_verts(),
                                 ee.get_moab()->dimension_from_handle( eh ), 1, ee.get_work_space(), &measure );CHECK_ERR( rval );
    if( measure ) integral /= measure;

    // check against avg of entity's vertices' positions
    rval = ee.get_moab()->get_coords( &eh, 1, avg.array() );CHECK_ERR( rval );
    CHECK_REAL_EQUAL( 0.0, ( avg - integral ).length(), EPS1 );

    // delete the temporary tag
    rval = ee.get_moab()->tag_delete( tag );CHECK_ERR( rval );
    // set the ee's tag back to coords
    rval = ee.set_tag_handle( 0, 0 );CHECK_ERR( rval );
}

void test_evals( ElemEvaluator& ee,
                 bool test_integrate,
                 EntityHandle* ents,
                 int num_ents,
                 Tag onetag,
                 double total_vol )
{
    for( int i = 0; i < num_ents; i++ )
    {
        ee.set_ent_handle( ents[i] );
        test_eval( ee, false );
    }

    if( !test_integrate ) return;
    if( !num_ents || !ents ) CHECK_ERR( MB_FAILURE );

    ErrorCode rval = ee.set_tag_handle( onetag, 0 );CHECK_ERR( rval );

    double tot_vol = 0.0;
    for( int i = 0; i < num_ents; i++ )
    {
        double tmp_vol;
        ee.set_ent_handle( ents[i] );
        rval = ee.integrate( &tmp_vol );CHECK_ERR( rval );
        tot_vol += tmp_vol;
    }
    CHECK_REAL_EQUAL( total_vol, tot_vol, EPS1 );
}

int main()
{
    int failures = 0;

    failures += RUN_TEST( test_linear_tri );  // currently failing linear tri, bad formulation, working on it...
    failures += RUN_TEST( test_linear_quad );
    failures += RUN_TEST( test_linear_hex );
    failures += RUN_TEST( test_quadratic_hex );
    failures += RUN_TEST( test_linear_tet );
    failures += RUN_TEST( test_normal_linear_tri );
    failures += RUN_TEST( test_normal_linear_quad );
    failures += RUN_TEST( test_normal_linear_tet );
    failures += RUN_TEST( test_normal_linear_hex );

    return failures;
}

void test_linear_tri()
{
    Core mb;
    Range verts;
    double tri_verts[] = { -1.0, -1.0, -1.0, 1.0, -1.0, -1.0, -1.0, 1.0, -1.0 };

    ErrorCode rval = mb.create_vertices( tri_verts, 3, verts );CHECK_ERR( rval );
    EntityHandle tri;
    std::vector< EntityHandle > connect;
    std::copy( verts.begin(), verts.end(), std::back_inserter( connect ) );
    rval = mb.create_element( MBTRI, &connect[0], 3, tri );CHECK_ERR( rval );

    ElemEvaluator ee( &mb, tri, 0 );
    ee.set_tag_handle( 0, 0 );
    ee.set_eval_set( MBTRI, LinearTri::eval_set() );

    test_eval( ee, true );
}

void test_linear_quad()
{
    Core mb;
    Range verts;
    ErrorCode rval = mb.create_vertices( (double*)hex_verts, 4, verts );CHECK_ERR( rval );
    EntityHandle quad;
    std::vector< EntityHandle > connect;
    std::copy( verts.begin(), verts.end(), std::back_inserter( connect ) );
    rval = mb.create_element( MBQUAD, &connect[0], 4, quad );CHECK_ERR( rval );

    ElemEvaluator ee( &mb, quad, 0 );
    ee.set_tag_handle( 0, 0 );
    ee.set_eval_set( MBQUAD, LinearQuad::eval_set() );

    test_eval( ee, true );
}

void test_linear_hex()
{
    Core mb;
    Range verts;
    ErrorCode rval = mb.create_vertices( (double*)hex_verts, 8, verts );CHECK_ERR( rval );
    EntityHandle hex;
    std::vector< EntityHandle > connect;
    std::copy( verts.begin(), verts.end(), std::back_inserter( connect ) );
    rval = mb.create_element( MBHEX, &connect[0], 8, hex );CHECK_ERR( rval );

    ElemEvaluator ee( &mb, hex, 0 );
    ee.set_tag_handle( 0, 0 );
    ee.set_eval_set( MBHEX, LinearHex::eval_set() );

    test_eval( ee, true );
}

void test_quadratic_hex()
{
    Core mb;
    Range verts;
    ErrorCode rval = mb.create_vertices( (double*)hex_verts, 27, verts );CHECK_ERR( rval );
    EntityHandle hex;
    std::vector< EntityHandle > connect;
    std::copy( verts.begin(), verts.end(), std::back_inserter( connect ) );
    rval = mb.create_element( MBHEX, &connect[0], 27, hex );CHECK_ERR( rval );

    ElemEvaluator ee( &mb, hex, 0 );
    ee.set_tag_handle( 0, 0 );
    ee.set_eval_set( MBHEX, QuadraticHex::eval_set() );

    test_eval( ee, false );
}

void test_linear_tet()
{
    Core mb;
    Range verts;
    ErrorCode rval = mb.create_vertices( (double*)hex_verts[0].array(), 8, verts );CHECK_ERR( rval );
    EntityHandle starth = 1, *conn;
    int conn_inds[]     = { 1, 6, 4, 5, 1, 4, 6, 3, 0, 1, 3, 4, 1, 2, 3, 6, 3, 4, 6, 7 };
    ReadUtilIface* ru;
    rval = mb.query_interface( ru );CHECK_ERR( rval );
    rval = ru->get_element_connect( 5, 4, MBTET, 1, starth, conn );CHECK_ERR( rval );
    for( unsigned int i = 0; i < 20; i++ )
        conn[i] = verts[conn_inds[i]];
    EntityHandle tets[5];
    for( unsigned int i = 0; i < 5; i++ )
        tets[i] = starth + i;
    ElemEvaluator ee( &mb, 0, 0 );
    ee.set_tag_handle( 0, 0 );
    ee.set_eval_set( MBTET, LinearTet::eval_set() );

    // make a tag whose value is one on all vertices
    Tag tag;
    rval = mb.tag_get_handle( NULL, 1, MB_TYPE_DOUBLE, tag, MB_TAG_DENSE | MB_TAG_CREAT );CHECK_ERR( rval );
    std::vector< double > vals( verts.size(), 1.0 );
    rval = mb.tag_set_data( tag, verts, &vals[0] );CHECK_ERR( rval );

    test_evals( ee, true, tets, 5, tag, 8.0 );
}

void test_normal_linear_tri()
{
    ErrorCode error;
    Core mb;

    error = create_mesh( mb, MBTRI );CHECK_ERR( error );
    Range faces;
    error = mb.get_entities_by_dimension( 0, 2, faces );CHECK_ERR( error );

    ElemEvaluator ee( &mb, 0, 0 );
    ee.set_eval_set( MBTRI, LinearTri::eval_set() );

    double nrms[8][3];

    for( int i = 0; i < 4; i++ )
    {
        ee.set_ent_handle( faces[i] );
        ee.get_normal( 1, 0, nrms[2 * i] );
        ee.get_normal( 1, 2, nrms[2 * i + 1] );
    }

    for( int i = 0; i < 4; i++ )
    {
        if( i == 3 )
        {
            double val = nrms[7][0] * nrms[0][0] + nrms[7][1] * nrms[0][1] + nrms[7][2] * nrms[0][2];
            CHECK_EQUAL( val, -1 );
        }
        else
        {
            double val = nrms[2 * i + 1][0] * nrms[2 * ( i + 1 )][0] + nrms[2 * i + 1][1] * nrms[2 * ( i + 1 )][1] +
                         nrms[2 * i + 1][2] * nrms[2 * ( i + 1 )][2];
            CHECK_EQUAL( val, -1 );
        }
    }
}

void test_normal_linear_quad()
{
    ErrorCode error;
    Core mb;

    error = create_mesh( mb, MBQUAD );CHECK_ERR( error );
    Range faces;
    error = mb.get_entities_by_dimension( 0, 2, faces );CHECK_ERR( error );

    ElemEvaluator ee( &mb, 0, 0 );
    ee.set_eval_set( MBQUAD, LinearQuad::eval_set() );

    double nrms[8][3];

    for( int i = 0; i < 4; i++ )
    {
        ee.set_ent_handle( faces[i] );
        ee.get_normal( 1, 0, nrms[2 * i] );
        ee.get_normal( 1, 3, nrms[2 * i + 1] );
    }

    for( int i = 0; i < 4; i++ )
    {
        if( i == 3 )
        {
            double val = nrms[7][0] * nrms[0][0] + nrms[7][1] * nrms[0][1] + nrms[7][2] * nrms[0][2];
            CHECK_EQUAL( val, -1 );
        }
        else
        {
            double val = nrms[2 * i + 1][0] * nrms[2 * ( i + 1 )][0] + nrms[2 * i + 1][1] * nrms[2 * ( i + 1 )][1] +
                         nrms[2 * i + 1][2] * nrms[2 * ( i + 1 )][2];
            CHECK_EQUAL( val, -1 );
        }
    }
}

void test_normal_linear_tet()
{
    ErrorCode error;
    Core mb;

    error = create_mesh( mb, MBTET );CHECK_ERR( error );
    Range cells;
    error = mb.get_entities_by_dimension( 0, 3, cells );CHECK_ERR( error );

    ElemEvaluator ee( &mb, 0, 0 );
    ee.set_eval_set( MBTET, LinearTet::eval_set() );

    double nrms[8][3];

    for( int i = 0; i < 4; i++ )
    {
        ee.set_ent_handle( cells[i] );
        ee.get_normal( 2, 0, nrms[2 * i] );
        ee.get_normal( 2, 2, nrms[2 * i + 1] );
    }

    for( int i = 0; i < 4; i++ )
    {
        if( i == 3 )
        {
            double val = nrms[7][0] * nrms[0][0] + nrms[7][1] * nrms[0][1] + nrms[7][2] * nrms[0][2];
            CHECK_EQUAL( val, -1 );
        }
        else
        {
            double val = nrms[2 * i + 1][0] * nrms[2 * ( i + 1 )][0] + nrms[2 * i + 1][1] * nrms[2 * ( i + 1 )][1] +
                         nrms[2 * i + 1][2] * nrms[2 * ( i + 1 )][2];
            CHECK_EQUAL( val, -1 );
        }
    }
}

void test_normal_linear_hex()
{
    ErrorCode error;
    Core mb;

    error = create_mesh( mb, MBHEX );CHECK_ERR( error );
    Range cells;
    error = mb.get_entities_by_dimension( 0, 3, cells );CHECK_ERR( error );

    ElemEvaluator ee( &mb, 0, 0 );
    ee.set_eval_set( MBHEX, LinearHex::eval_set() );

    double nrms[8][3];

    for( int i = 0; i < 4; i++ )
    {
        ee.set_ent_handle( cells[i] );
        ee.get_normal( 2, 0, nrms[2 * i] );
        ee.get_normal( 2, 3, nrms[2 * i + 1] );
    }

    for( int i = 0; i < 4; i++ )
    {
        if( i == 3 )
        {
            double val = nrms[7][0] * nrms[0][0] + nrms[7][1] * nrms[0][1] + nrms[7][2] * nrms[0][2];
            CHECK_EQUAL( val, -1 );
        }
        else
        {
            double val = nrms[2 * i + 1][0] * nrms[2 * ( i + 1 )][0] + nrms[2 * i + 1][1] * nrms[2 * ( i + 1 )][1] +
                         nrms[2 * i + 1][2] * nrms[2 * ( i + 1 )][2];
            CHECK_EQUAL( val, -1 );
        }
    }
}

ErrorCode create_mesh( Core& mb, EntityType type )
{
    ErrorCode error;
    if( type == MBTRI )
    {
        const double coords[] = { 0, 0, 0, 1, 0, 0, 0, 1, 0, -1, 0, 0, 0, -1, 0 };
        const size_t num_vtx  = sizeof( coords ) / sizeof( double ) / 3;

        const int conn[]       = { 0, 1, 2, 0, 2, 3, 0, 3, 4, 0, 4, 1 };
        const size_t num_elems = sizeof( conn ) / sizeof( int ) / 3;

        EntityHandle verts[num_vtx], faces[num_elems];
        for( size_t i = 0; i < num_vtx; ++i )
        {
            error = mb.create_vertex( coords + 3 * i, verts[i] );CHECK_ERR( error );
        }

        for( size_t i = 0; i < num_elems; ++i )
        {
            EntityHandle c[3];
            for( int j = 0; j < 3; j++ )
                c[j] = verts[conn[3 * i + j]];

            error = mb.create_element( MBTRI, c, 3, faces[i] );CHECK_ERR( error );
        }
    }
    else if( type == MBQUAD )
    {
        const double coords[] = { 0, 0,  0, 1, 0,  0,  1, 1, 0,  0, 1, 0,  -1, 1,
                                  0, -1, 0, 0, -1, -1, 0, 0, -1, 0, 1, -1, 0 };
        const size_t num_vtx  = sizeof( coords ) / sizeof( double ) / 3;

        const int conn[]       = { 0, 1, 2, 3, 0, 3, 4, 5, 0, 5, 6, 7, 0, 7, 8, 1 };
        const size_t num_elems = sizeof( conn ) / sizeof( int ) / 4;

        EntityHandle verts[num_vtx], faces[num_elems];
        for( size_t i = 0; i < num_vtx; ++i )
        {
            error = mb.create_vertex( coords + 3 * i, verts[i] );CHECK_ERR( error );
        }

        for( size_t i = 0; i < num_elems; ++i )
        {
            EntityHandle c[4];
            for( int j = 0; j < 4; j++ )
                c[j] = verts[conn[4 * i + j]];

            error = mb.create_element( MBQUAD, c, 4, faces[i] );CHECK_ERR( error );
        }
    }
    else if( type == MBTET )
    {
        const double coords[] = { 0, 0, 0, 1, 0, 0, 0, 1, 0, -1, 0, 0, 0, -1, 0, 0, 0, 1 };
        const size_t num_vtx  = sizeof( coords ) / sizeof( double ) / 3;

        const int conn[]       = { 0, 1, 2, 5, 0, 2, 3, 5, 0, 3, 4, 5, 0, 4, 1, 5 };
        const size_t num_elems = sizeof( conn ) / sizeof( int ) / 4;

        EntityHandle verts[num_vtx], cells[num_elems];
        for( size_t i = 0; i < num_vtx; ++i )
        {
            error = mb.create_vertex( coords + 3 * i, verts[i] );CHECK_ERR( error );
        }

        for( size_t i = 0; i < num_elems; ++i )
        {
            EntityHandle c[4];
            for( int j = 0; j < 4; j++ )
                c[j] = verts[conn[4 * i + j]];

            error = mb.create_element( MBTET, c, 4, cells[i] );CHECK_ERR( error );
        }
    }
    else if( type == MBHEX )
    {
        const double coords[] = { 0,  0,  0, 1,  0,  0, 1,  1,  0, 0,  1,  0, -1, 1,  0, -1, 0,  0,
                                  -1, -1, 0, 0,  -1, 0, 1,  -1, 0, 0,  0,  1, 1,  0,  1, 1,  1,  1,
                                  0,  1,  1, -1, 1,  1, -1, 0,  1, -1, -1, 1, 0,  -1, 1, 1,  -1, 1 };
        const size_t num_vtx  = sizeof( coords ) / sizeof( double ) / 3;

        const int conn[]       = { 0, 1, 2, 3, 9, 10, 11, 12, 0, 3, 4, 5, 9, 12, 13, 14,
                             0, 5, 6, 7, 9, 14, 15, 16, 0, 7, 8, 1, 9, 16, 17, 10 };
        const size_t num_elems = sizeof( conn ) / sizeof( int ) / 8;

        EntityHandle verts[num_vtx], cells[num_elems];
        for( size_t i = 0; i < num_vtx; ++i )
        {
            error = mb.create_vertex( coords + 3 * i, verts[i] );CHECK_ERR( error );
        }

        for( size_t i = 0; i < num_elems; ++i )
        {
            EntityHandle c[8];
            for( int j = 0; j < 8; j++ )
                c[j] = verts[conn[8 * i + j]];

            error = mb.create_element( MBHEX, c, 8, cells[i] );CHECK_ERR( error );
        }
    }

    return MB_SUCCESS;
}